RNA–Protein interactions for RNA: ENST00000474409.1

CNN3-205, Transcript of calponin 3, humanhuman

TSL 3

Gene CNN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNN3-205ENST00000474409 CLASP1Q7Z460 1538 aa13.54□□□□□ -0.24
CNN3-205ENST00000474409 UBTFP17480 764 aaKnown RBP13.54□□□□□ -0.24
CNN3-205ENST00000474409 SHROOM2Q13796 1616 aa13.53□□□□□ -0.24
CNN3-205ENST00000474409 KIAA0586Q9BVV6 1533 aa13.5□□□□□ -0.25
CNN3-205ENST00000474409 TNIKQ9UKE5 1360 aa13.5□□□□□ -0.25
CNN3-205ENST00000474409 LOC105371045A0A1W2PR82 267 aa13.5□□□□□ -0.25
CNN3-205ENST00000474409 SAMD9Q5K651 1589 aa13.49□□□□□ -0.25
CNN3-205ENST00000474409 EFCAB5A4FU69 1503 aa13.49□□□□□ -0.25
CNN3-205ENST00000474409 KIAA0556O60303 1618 aa13.47□□□□□ -0.25
CNN3-205ENST00000474409 UGGT2Q9NYU1 1516 aa13.46□□□□□ -0.25
CNN3-205ENST00000474409 CEP162Q5TB80 1403 aa13.46□□□□□ -0.26
CNN3-205ENST00000474409 CLIP1P30622 1438 aa13.42□□□□□ -0.26
CNN3-205ENST00000474409 RANGAP1P46060 587 aaPredicted RBP13.41□□□□□ -0.26
CNN3-205ENST00000474409 OSCARQ8IYS5 282 aa13.39□□□□□ -0.27
CNN3-205ENST00000474409 ARHGAP35Q9NRY4 1499 aa13.39□□□□□ -0.27
CNN3-205ENST00000474409 DISP1Q96F81 1524 aa13.39□□□□□ -0.27
CNN3-205ENST00000474409 ERCC6L2Q5T890 1561 aa13.37□□□□□ -0.27
CNN3-205ENST00000474409 CARMIL2Q6F5E8 1435 aa13.37□□□□□ -0.27
CNN3-205ENST00000474409 ARAP1Q96P48 1450 aa13.36□□□□□ -0.27
CNN3-205ENST00000474409 FHOD3Q2V2M9 1422 aa13.35□□□□□ -0.27
CNN3-205ENST00000474409 PRG4Q92954 1404 aaPredicted RBP13.35□□□□□ -0.27
CNN3-205ENST00000474409 RIMBP3CA6NJZ7 1639 aa13.35□□□□□ -0.27
CNN3-205ENST00000474409 RIMBP3BA6NNM3 1639 aa13.35□□□□□ -0.27
CNN3-205ENST00000474409 RIMBP3Q9UFD9 1639 aa13.35□□□□□ -0.27
CNN3-205ENST00000474409 LRRIQ1Q96JM4 1722 aa13.34□□□□□ -0.27
CNN3-205ENST00000474409 PCF11O94913 1555 aaKnown RBP13.34□□□□□ -0.27
CNN3-205ENST00000474409 RAPGEF6Q8TEU7 1601 aa13.32□□□□□ -0.28
CNN3-205ENST00000474409 JPH4Q96JJ6 628 aa13.32□□□□□ -0.28
CNN3-205ENST00000474409 ARHGEF11O15085 1522 aa13.32□□□□□ -0.28
CNN3-205ENST00000474409 HECW1Q76N89 1606 aa13.31□□□□□ -0.28
CNN3-205ENST00000474409 CFAP43Q8NDM7 1665 aa13.3□□□□□ -0.28
CNN3-205ENST00000474409 P3H3Q8IVL6 736 aa13.28□□□□□ -0.28
CNN3-205ENST00000474409 FMN1Q68DA7 1419 aa13.28□□□□□ -0.28
CNN3-205ENST00000474409 VPS8Q8N3P4 1428 aa13.28□□□□□ -0.28
CNN3-205ENST00000474409 ABCA8O94911 1581 aa13.25□□□□□ -0.29
CNN3-205ENST00000474409 FYCO1Q9BQS8 1478 aa13.25□□□□□ -0.29
CNN3-205ENST00000474409 TTBK1Q5TCY1 1321 aaPredicted RBP13.23□□□□□ -0.29
CNN3-205ENST00000474409 ADCY10Q96PN6 1610 aa13.23□□□□□ -0.29
CNN3-205ENST00000474409 ABCC2Q92887 1545 aa13.21□□□□□ -0.29
CNN3-205ENST00000474409 PTPRGP23470 1445 aa13.21□□□□□ -0.3
CNN3-205ENST00000474409 ZCCHC11Q5TAX3 1644 aaKnown RBP13.21□□□□□ -0.3
CNN3-205ENST00000474409 PLB1Q6P1J6 1458 aa13.2□□□□□ -0.3
CNN3-205ENST00000474409 CASKIN1Q8WXD9 1431 aa13.2□□□□□ -0.3
CNN3-205ENST00000474409 TIAM1Q13009 1591 aa13.19□□□□□ -0.3
CNN3-205ENST00000474409 CCDC18Q5T9S5 1454 aa13.18□□□□□ -0.3
CNN3-205ENST00000474409 UACAQ9BZF9 1416 aa13.16□□□□□ -0.3
CNN3-205ENST00000474409 NUP153P49790 1475 aaKnown RBP13.16□□□□□ -0.3
CNN3-205ENST00000474409 CDK13Q14004 1512 aaKnown RBP13.15□□□□□ -0.3
CNN3-205ENST00000474409 UHRF1BP1LA0JNW5 1464 aa13.14□□□□□ -0.31
CNN3-205ENST00000474409 EPRSP07814 1512 aaKnown RBP13.13□□□□□ -0.31
CNN3-205ENST00000474409 ATP1B4Q9UN42 357 aaPredicted RBP13.12□□□□□ -0.31
CNN3-205ENST00000474409 SUPT6HQ7KZ85 1726 aaKnown RBP13.12□□□□□ -0.31
CNN3-205ENST00000474409 MAP3K1Q13233 1512 aa13.11□□□□□ -0.31
CNN3-205ENST00000474409 EHBP1L1Q8N3D4 1523 aa13.11□□□□□ -0.31
CNN3-205ENST00000474409 APLP2Q06481 763 aa13.09□□□□□ -0.31
CNN3-205ENST00000474409 KDM5BQ9UGL1 1544 aa13.08□□□□□ -0.31
CNN3-205ENST00000474409 KIF14Q15058 1648 aa13.08□□□□□ -0.32
CNN3-205ENST00000474409 ARID3CA6NKF2 412 aa13.07□□□□□ -0.32
CNN3-205ENST00000474409 ITSN2Q9NZM3 1697 aa13.07□□□□□ -0.32
CNN3-205ENST00000474409 MYO5CQ9NQX4 1742 aa13.06□□□□□ -0.32
CNN3-205ENST00000474409 MAGI3Q5TCQ9 1506 aa13.06□□□□□ -0.32
CNN3-205ENST00000474409 ATP10BO94823 1461 aa13.05□□□□□ -0.32
CNN3-205ENST00000474409 CDC42BPAQ5VT25 1732 aa13.05□□□□□ -0.32
CNN3-205ENST00000474409 LRRC9Q6ZRR7 1453 aa13.04□□□□□ -0.32
CNN3-205ENST00000474409 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.04□□□□□ -0.32
CNN3-205ENST00000474409 HNRNPUL2Q1KMD3 747 aaKnown RBP13.04□□□□□ -0.32
CNN3-205ENST00000474409 CYB5RLQ6IPT4 315 aa13.04□□□□□ -0.32
CNN3-205ENST00000474409 MAPKBP1O60336 1514 aa13.03□□□□□ -0.32
CNN3-205ENST00000474409 KIF13AQ9H1H9 1805 aa13.03□□□□□ -0.32
CNN3-205ENST00000474409 DNAJC5Q9H3Z4 198 aa13.02□□□□□ -0.33
CNN3-205ENST00000474409 MTUS2Q5JR59 1369 aa13.02□□□□□ -0.33
CNN3-205ENST00000474409 TSPOAP1O95153 1857 aa12.99□□□□□ -0.33
CNN3-205ENST00000474409 TTC37Q6PGP7 1564 aa12.99□□□□□ -0.33
CNN3-205ENST00000474409 WDR7Q9Y4E6 1490 aa12.99□□□□□ -0.33
CNN3-205ENST00000474409 TROQ12816 1431 aaPredicted RBP12.99□□□□□ -0.33
CNN3-205ENST00000474409 NPM1P06748 294 aaKnown RBP eCLIP12.99□□□□□ -0.33
CNN3-205ENST00000474409 PREX2Q70Z35 1606 aa12.99□□□□□ -0.33
CNN3-205ENST00000474409 CDK11AQ9UQ88 783 aaPredicted RBP12.98□□□□□ -0.33
CNN3-205ENST00000474409 CDC42BPBQ9Y5S2 1711 aa12.98□□□□□ -0.33
CNN3-205ENST00000474409 ABCA9Q8IUA7 1624 aa12.98□□□□□ -0.33
CNN3-205ENST00000474409 ASXL2Q76L83 1435 aa12.97□□□□□ -0.33
CNN3-205ENST00000474409 DIP2BQ9P265 1576 aa12.97□□□□□ -0.33
CNN3-205ENST00000474409 NCOA2Q15596 1464 aa12.95□□□□□ -0.34
CNN3-205ENST00000474409 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.94□□□□□ -0.34
CNN3-205ENST00000474409 PLEKHD1A6NEE1 506 aa12.94□□□□□ -0.34
CNN3-205ENST00000474409 PPARGC1BQ86YN6 1023 aaKnown RBP12.94□□□□□ -0.34
CNN3-205ENST00000474409 MAP3K4Q9Y6R4 1608 aa12.94□□□□□ -0.34
CNN3-205ENST00000474409 KANK4Q5T7N3 995 aaPredicted RBP12.93□□□□□ -0.34
CNN3-205ENST00000474409 CFAP74Q9C0B2 1584 aa12.93□□□□□ -0.34
CNN3-205ENST00000474409 GLI2P10070 1586 aa12.9□□□□□ -0.34
CNN3-205ENST00000474409 PTPN23Q9H3S7 1636 aa12.9□□□□□ -0.34
CNN3-205ENST00000474409 ABCC10Q5T3U5 1492 aa12.9□□□□□ -0.34
CNN3-205ENST00000474409 CROCC2H7BZ55 1655 aa12.88□□□□□ -0.35
CNN3-205ENST00000474409 PPRC1Q5VV67 1664 aaKnown RBP12.88□□□□□ -0.35
CNN3-205ENST00000474409 ARHGAP5Q13017 1502 aa12.87□□□□□ -0.35
CNN3-205ENST00000474409 MYOM3Q5VTT5 1437 aa12.87□□□□□ -0.35
CNN3-205ENST00000474409 CCNB3Q8WWL7 1395 aa12.86□□□□□ -0.35
CNN3-205ENST00000474409 KCNH8Q96L42 1107 aa12.86□□□□□ -0.35
CNN3-205ENST00000474409 ARAP3Q8WWN8 1544 aa12.86□□□□□ -0.35
CNN3-205ENST00000474409 PHLDB1Q86UU1 1377 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms