RNA–Protein interactions for RNA: ENST00000474409.1

CNN3-205, Transcript of calponin 3, humanhuman

TSL 3

Gene CNN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNN3-205ENST00000474409 NISCHQ9Y2I1 1504 aa19.67■□□□□ 0.74
CNN3-205ENST00000474409 CCDC180Q9P1Z9 1646 aa17.52■□□□□ 0.4
CNN3-205ENST00000474409 ABCC9O60706 1549 aa16.63■□□□□ 0.25
CNN3-205ENST00000474409 ZCCHC6Q5VYS8 1495 aaKnown RBP16.49■□□□□ 0.23
CNN3-205ENST00000474409 DCAF1Q9Y4B6 1507 aa16.3■□□□□ 0.2
CNN3-205ENST00000474409 NACADO15069 1562 aa16.26■□□□□ 0.19
CNN3-205ENST00000474409 RB1CC1Q8TDY2 1594 aa16.23■□□□□ 0.19
CNN3-205ENST00000474409 MYO15BQ96JP2 1530 aa16.21■□□□□ 0.19
CNN3-205ENST00000474409 DCAF8L2P0C7V8 631 aa16.19■□□□□ 0.18
CNN3-205ENST00000474409 UNC13AQ9UPW8 1703 aa16.07■□□□□ 0.16
CNN3-205ENST00000474409 SCRIBQ14160 1630 aa15.97■□□□□ 0.15
CNN3-205ENST00000474409 SHROOM4Q9ULL8 1493 aa15.74■□□□□ 0.11
CNN3-205ENST00000474409 BICRAQ9NZM4 1560 aa15.69■□□□□ 0.1
CNN3-205ENST00000474409 PABPN1Q86U42 306 aaKnown RBP eCLIP15.49■□□□□ 0.07
CNN3-205ENST00000474409 SMARCA4P51532 1647 aa15.29■□□□□ 0.04
CNN3-205ENST00000474409 BAZ1AQ9NRL2 1556 aaPredicted RBP15.28■□□□□ 0.04
CNN3-205ENST00000474409 EIF4G1Q04637 1599 aaKnown RBP15.26■□□□□ 0.03
CNN3-205ENST00000474409 CECR2Q9BXF3 1484 aa15.25■□□□□ 0.03
CNN3-205ENST00000474409 MROH2BQ7Z745 1585 aa15.17■□□□□ 0.02
CNN3-205ENST00000474409 CC2D2AQ9P2K1 1620 aa15.14■□□□□ 0.01
CNN3-205ENST00000474409 WIZO95785 1651 aa15.13■□□□□ 0.01
CNN3-205ENST00000474409 PEG3Q9GZU2 1588 aa15.08■□□□□ 0
CNN3-205ENST00000474409 SMARCA2P51531 1590 aa15.07■□□□□ 0
CNN3-205ENST00000474409 RSF1Q96T23 1441 aaPredicted RBP15.06■□□□□ 0
CNN3-205ENST00000474409 ATAD2BQ9ULI0 1458 aa14.99□□□□□ -0.01
CNN3-205ENST00000474409 HMGXB3Q12766 1538 aa14.97□□□□□ -0.01
CNN3-205ENST00000474409 TOP2AP11388 1531 aaKnown RBP14.95□□□□□ -0.02
CNN3-205ENST00000474409 BAZ1BQ9UIG0 1483 aaKnown RBP14.95□□□□□ -0.02
CNN3-205ENST00000474409 SUPT5HO00267 1087 aaKnown RBP14.93□□□□□ -0.02
CNN3-205ENST00000474409 NCAPD3P42695 1498 aa14.89□□□□□ -0.03
CNN3-205ENST00000474409 PRDM2Q13029 1718 aa14.78□□□□□ -0.04
CNN3-205ENST00000474409 DNAJC5BQ9UF47 199 aa14.76□□□□□ -0.05
CNN3-205ENST00000474409 CCDC88BA6NC98 1476 aa14.68□□□□□ -0.06
CNN3-205ENST00000474409 LAMC3Q9Y6N6 1575 aa14.58□□□□□ -0.08
CNN3-205ENST00000474409 KIF21AQ7Z4S6 1674 aa14.53□□□□□ -0.08
CNN3-205ENST00000474409 NESP48681 1621 aa14.49□□□□□ -0.09
CNN3-205ENST00000474409 CFTRP13569 1480 aa14.49□□□□□ -0.09
CNN3-205ENST00000474409 CADPSQ9ULU8 1353 aa14.47□□□□□ -0.09
CNN3-205ENST00000474409 FANCD2Q9BXW9 1451 aa14.38□□□□□ -0.11
CNN3-205ENST00000474409 PDS5BQ9NTI5 1447 aa14.36□□□□□ -0.11
CNN3-205ENST00000474409 CEP164Q9UPV0 1460 aa14.36□□□□□ -0.11
CNN3-205ENST00000474409 ABCC8Q09428 1581 aa14.35□□□□□ -0.11
CNN3-205ENST00000474409 ERCC6Q03468 1493 aa14.34□□□□□ -0.11
CNN3-205ENST00000474409 THOC2Q8NI27 1593 aaKnown RBP14.31□□□□□ -0.12
CNN3-205ENST00000474409 BIVM-ERCC5R4GMW8 1640 aa14.31□□□□□ -0.12
CNN3-205ENST00000474409 SYNJ1O43426 1573 aa14.28□□□□□ -0.12
CNN3-205ENST00000474409 DNMBPQ6XZF7 1577 aa14.27□□□□□ -0.12
CNN3-205ENST00000474409 TOP2BQ02880 1626 aa14.26□□□□□ -0.13
CNN3-205ENST00000474409 MRC2Q9UBG0 1479 aa14.25□□□□□ -0.13
CNN3-205ENST00000474409 WRNQ14191 1432 aaPredicted RBP eCLIP14.24□□□□□ -0.13
CNN3-205ENST00000474409 CUX1P39880 1505 aa14.23□□□□□ -0.13
CNN3-205ENST00000474409 WDR62O43379 1518 aa14.22□□□□□ -0.13
CNN3-205ENST00000474409 URB2Q14146 1524 aaKnown RBP14.21□□□□□ -0.13
CNN3-205ENST00000474409 TOPBP1Q92547 1522 aa14.2□□□□□ -0.14
CNN3-205ENST00000474409 WDR97A6NE52 1622 aa14.16□□□□□ -0.14
CNN3-205ENST00000474409 FGD5Q6ZNL6 1462 aa14.12□□□□□ -0.15
CNN3-205ENST00000474409 CHIC1Q5VXU3 224 aa14.1□□□□□ -0.15
CNN3-205ENST00000474409 POLA1P09884 1462 aaPredicted RBP14.1□□□□□ -0.15
CNN3-205ENST00000474409 TRIM41Q8WV44 630 aa14.08□□□□□ -0.16
CNN3-205ENST00000474409 TARBP1Q13395 1621 aaKnown RBP14.07□□□□□ -0.16
CNN3-205ENST00000474409 PBRM1Q86U86 1689 aa14.06□□□□□ -0.16
CNN3-205ENST00000474409 CUX2O14529 1486 aa14.03□□□□□ -0.16
CNN3-205ENST00000474409 ABCA5Q8WWZ7 1642 aa14.01□□□□□ -0.17
CNN3-205ENST00000474409 EIF4G3O43432 1585 aaKnown RBP14□□□□□ -0.17
CNN3-205ENST00000474409 IFT140Q96RY7 1462 aa14□□□□□ -0.17
CNN3-205ENST00000474409 RAD54L2Q9Y4B4 1467 aa14□□□□□ -0.17
CNN3-205ENST00000474409 ABCA10Q8WWZ4 1543 aa13.99□□□□□ -0.17
CNN3-205ENST00000474409 SOGA1O94964 1423 aa13.98□□□□□ -0.17
CNN3-205ENST00000474409 CUL7Q14999 1698 aa13.91□□□□□ -0.18
CNN3-205ENST00000474409 KIF27Q86VH2 1401 aa13.9□□□□□ -0.18
CNN3-205ENST00000474409 ZNF608Q9ULD9 1512 aaPredicted RBP13.9□□□□□ -0.18
CNN3-205ENST00000474409 EEA1Q15075 1411 aa13.89□□□□□ -0.19
CNN3-205ENST00000474409 RUSC2Q8N2Y8 1516 aa13.88□□□□□ -0.19
CNN3-205ENST00000474409 GAPVD1Q14C86 1478 aa13.87□□□□□ -0.19
CNN3-205ENST00000474409 ERICH3Q5RHP9 1530 aa13.86□□□□□ -0.19
CNN3-205ENST00000474409 CHD1O14646 1710 aa13.85□□□□□ -0.19
CNN3-205ENST00000474409 ADAMTS12P58397 1594 aa13.84□□□□□ -0.19
CNN3-205ENST00000474409 TDRD9Q8NDG6 1382 aaKnown RBP13.83□□□□□ -0.19
CNN3-205ENST00000474409 KIF21BO75037 1637 aa13.83□□□□□ -0.2
CNN3-205ENST00000474409 AQRO60306 1485 aaKnown RBP eCLIP13.83□□□□□ -0.2
CNN3-205ENST00000474409 GRIN2BQ13224 1484 aa13.82□□□□□ -0.2
CNN3-205ENST00000474409 CTTNBP2Q8WZ74 1663 aa13.81□□□□□ -0.2
CNN3-205ENST00000474409 FAM9AQ8IZU1 332 aaPredicted RBP13.8□□□□□ -0.2
CNN3-205ENST00000474409 SNAPC4Q5SXM2 1469 aa13.79□□□□□ -0.2
CNN3-205ENST00000474409 MAGI1Q96QZ7 1491 aaPredicted RBP13.78□□□□□ -0.2
CNN3-205ENST00000474409 CSRNP3Q8WYN3 585 aa13.71□□□□□ -0.21
CNN3-205ENST00000474409 FHAD1B1AJZ9 1412 aa13.71□□□□□ -0.22
CNN3-205ENST00000474409 IGF1RP08069 1367 aa13.71□□□□□ -0.22
CNN3-205ENST00000474409 SYNJ2O15056 1496 aa13.7□□□□□ -0.22
CNN3-205ENST00000474409 GOLGA3Q08378 1498 aa13.7□□□□□ -0.22
CNN3-205ENST00000474409 PRXQ9BXM0 1461 aa13.7□□□□□ -0.22
CNN3-205ENST00000474409 RAPGEF2Q9Y4G8 1499 aa13.7□□□□□ -0.22
CNN3-205ENST00000474409 CARMIL1Q5VZK9 1371 aa13.68□□□□□ -0.22
CNN3-205ENST00000474409 GRIN2AQ12879 1464 aa13.67□□□□□ -0.22
CNN3-205ENST00000474409 CEP170Q5SW79 1584 aa13.63□□□□□ -0.23
CNN3-205ENST00000474409 EHMT2Q96KQ7 1210 aa13.61□□□□□ -0.23
CNN3-205ENST00000474409 IQGAP2Q13576 1575 aa13.6□□□□□ -0.23
CNN3-205ENST00000474409 FBLN2P98095 1184 aa13.58□□□□□ -0.24
CNN3-205ENST00000474409 CHMP7Q8WUX9 453 aaPredicted RBP13.58□□□□□ -0.24
CNN3-205ENST00000474409 NUP160Q12769 1436 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms