RNA–Protein interactions for RNA: ENST00000474246.1

SMARCE1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 2,124 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-208ENST00000474246 ATXN8OSP0DMR3 200 aa10.04□□□□□ -0.8
SMARCE1-208ENST00000474246 KIF21AQ7Z4S6 1674 aa10.03□□□□□ -0.8
SMARCE1-208ENST00000474246 SCRIBQ14160 1630 aa10.02□□□□□ -0.8
SMARCE1-208ENST00000474246 KLHL34Q8N239 644 aa10.01□□□□□ -0.81
SMARCE1-208ENST00000474246 ADGRL1O94910 1474 aa10□□□□□ -0.81
SMARCE1-208ENST00000474246 ATF5Q9Y2D1 282 aaPredicted RBP10□□□□□ -0.81
SMARCE1-208ENST00000474246 CERKQ8TCT0 537 aa10□□□□□ -0.81
SMARCE1-208ENST00000474246 PODXL2Q9NZ53 605 aa10□□□□□ -0.81
SMARCE1-208ENST00000474246 TPRNQ4KMQ1 711 aa9.99□□□□□ -0.81
SMARCE1-208ENST00000474246 IFFO2Q5TF58 517 aa9.98□□□□□ -0.81
SMARCE1-208ENST00000474246 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.96□□□□□ -0.82
SMARCE1-208ENST00000474246 HNRNPUL2Q1KMD3 747 aaKnown RBP9.96□□□□□ -0.82
SMARCE1-208ENST00000474246 SAMD1Q6SPF0 538 aaPredicted RBP9.96□□□□□ -0.82
SMARCE1-208ENST00000474246 GTF3C3Q9Y5Q9 886 aa9.92□□□□□ -0.82
SMARCE1-208ENST00000474246 C1QBPQ07021 282 aaKnown RBP9.86□□□□□ -0.83
SMARCE1-208ENST00000474246 KDM6BO15054 1643 aa9.86□□□□□ -0.83
SMARCE1-208ENST00000474246 PLCB2Q00722 1185 aa9.86□□□□□ -0.83
SMARCE1-208ENST00000474246 NPM2Q86SE8 214 aaKnown RBP9.83□□□□□ -0.84
SMARCE1-208ENST00000474246 HMGXB3Q12766 1538 aa9.8□□□□□ -0.84
SMARCE1-208ENST00000474246 FBXO3Q9UK99 471 aa9.79□□□□□ -0.84
SMARCE1-208ENST00000474246 ZNF219Q9P2Y4 722 aaPredicted RBP9.76□□□□□ -0.85
SMARCE1-208ENST00000474246 SPINK5Q9NQ38 1064 aaPredicted RBP9.76□□□□□ -0.85
SMARCE1-208ENST00000474246 KIF13AQ9H1H9 1805 aa9.75□□□□□ -0.85
SMARCE1-208ENST00000474246 FKBP8Q14318 412 aa9.73□□□□□ -0.85
SMARCE1-208ENST00000474246 HAP1P54257 671 aaPredicted RBP9.73□□□□□ -0.85
SMARCE1-208ENST00000474246 TOP2BQ02880 1626 aa9.72□□□□□ -0.85
SMARCE1-208ENST00000474246 ATAD2BQ9ULI0 1458 aa9.72□□□□□ -0.85
SMARCE1-208ENST00000474246 GAPVD1Q14C86 1478 aa9.7□□□□□ -0.86
SMARCE1-208ENST00000474246 CEP164Q9UPV0 1460 aa9.7□□□□□ -0.86
SMARCE1-208ENST00000474246 FAM69CQ0P6D2 419 aa9.7□□□□□ -0.86
SMARCE1-208ENST00000474246 CAPN15O75808 1086 aa9.69□□□□□ -0.86
SMARCE1-208ENST00000474246 TMEM132AQ24JP5 1023 aa9.68□□□□□ -0.86
SMARCE1-208ENST00000474246 C14orf37Q86TY3 774 aa9.68□□□□□ -0.86
SMARCE1-208ENST00000474246 FBLN2P98095 1184 aa9.67□□□□□ -0.86
SMARCE1-208ENST00000474246 CHD1O14646 1710 aa9.67□□□□□ -0.86
SMARCE1-208ENST00000474246 CADPSQ9ULU8 1353 aa9.66□□□□□ -0.86
SMARCE1-208ENST00000474246 PLEKHG5O94827 1062 aa9.65□□□□□ -0.86
SMARCE1-208ENST00000474246 ABCC10Q5T3U5 1492 aa9.62□□□□□ -0.87
SMARCE1-208ENST00000474246 CLASP1Q7Z460 1538 aa9.62□□□□□ -0.87
SMARCE1-208ENST00000474246 IFT140Q96RY7 1462 aa9.62□□□□□ -0.87
SMARCE1-208ENST00000474246 BCL11AQ9H165 835 aa9.61□□□□□ -0.87
SMARCE1-208ENST00000474246 POLA2Q14181 598 aa9.6□□□□□ -0.87
SMARCE1-208ENST00000474246 VSIG10Q8N0Z9 540 aa9.59□□□□□ -0.87
SMARCE1-208ENST00000474246 ZNF608Q9ULD9 1512 aaPredicted RBP9.59□□□□□ -0.87
SMARCE1-208ENST00000474246 ABCB7O75027 752 aa9.56□□□□□ -0.88
SMARCE1-208ENST00000474246 BAZ1BQ9UIG0 1483 aaKnown RBP9.56□□□□□ -0.88
SMARCE1-208ENST00000474246 PCF11O94913 1555 aaKnown RBP9.55□□□□□ -0.88
SMARCE1-208ENST00000474246 MED1Q15648 1581 aaPredicted RBP9.55□□□□□ -0.88
SMARCE1-208ENST00000474246 MKRN4PQ13434 485 aaPredicted RBP9.55□□□□□ -0.88
SMARCE1-208ENST00000474246 SYNJ1O43426 1573 aa9.53□□□□□ -0.88
SMARCE1-208ENST00000474246 PCDH10Q9P2E7 1040 aa9.52□□□□□ -0.89
SMARCE1-208ENST00000474246 FANCD2Q9BXW9 1451 aa9.51□□□□□ -0.89
SMARCE1-208ENST00000474246 SMARCA4P51532 1647 aa9.5□□□□□ -0.89
SMARCE1-208ENST00000474246 TRIM26Q12899 539 aaPredicted RBP9.5□□□□□ -0.89
SMARCE1-208ENST00000474246 IQSEC2Q5JU85 1478 aa9.49□□□□□ -0.89
SMARCE1-208ENST00000474246 SNAPC4Q5SXM2 1469 aa9.49□□□□□ -0.89
SMARCE1-208ENST00000474246 EIF4G3O43432 1585 aaKnown RBP9.47□□□□□ -0.89
SMARCE1-208ENST00000474246 URB2Q14146 1524 aaKnown RBP9.47□□□□□ -0.89
SMARCE1-208ENST00000474246 NPM1P06748 294 aaKnown RBP eCLIP9.47□□□□□ -0.89
SMARCE1-208ENST00000474246 DIP2BQ9P265 1576 aa9.47□□□□□ -0.89
SMARCE1-208ENST00000474246 DCAF1Q9Y4B6 1507 aa9.45□□□□□ -0.9
SMARCE1-208ENST00000474246 SPDYE4A6NLX3 237 aa9.44□□□□□ -0.9
SMARCE1-208ENST00000474246 DSG3P32926 999 aa9.44□□□□□ -0.9
SMARCE1-208ENST00000474246 PDIA4P13667 645 aaKnown RBP9.43□□□□□ -0.9
SMARCE1-208ENST00000474246 SLC34A2O95436 690 aa9.41□□□□□ -0.9
SMARCE1-208ENST00000474246 PTPRMP28827 1452 aa9.41□□□□□ -0.9
SMARCE1-208ENST00000474246 LOC105371045A0A1W2PR82 267 aa9.41□□□□□ -0.9
SMARCE1-208ENST00000474246 MAPKBP1O60336 1514 aa9.41□□□□□ -0.9
SMARCE1-208ENST00000474246 CHMP7Q8WUX9 453 aaPredicted RBP9.4□□□□□ -0.9
SMARCE1-208ENST00000474246 LTBP4Q8N2S1 1624 aa9.4□□□□□ -0.91
SMARCE1-208ENST00000474246 SUPT5HO00267 1087 aaKnown RBP9.37□□□□□ -0.91
SMARCE1-208ENST00000474246 ZBTB12Q9Y330 459 aaPredicted RBP9.37□□□□□ -0.91
SMARCE1-208ENST00000474246 TSPOAP1O95153 1857 aa9.37□□□□□ -0.91
SMARCE1-208ENST00000474246 CDK11AQ9UQ88 783 aaPredicted RBP9.37□□□□□ -0.91
SMARCE1-208ENST00000474246 HRCP23327 699 aa9.36□□□□□ -0.91
SMARCE1-208ENST00000474246 HSPA2P54652 639 aa9.35□□□□□ -0.91
SMARCE1-208ENST00000474246 UBE2Q2Q8WVN8 375 aa9.35□□□□□ -0.91
SMARCE1-208ENST00000474246 AQRO60306 1485 aaKnown RBP eCLIP9.34□□□□□ -0.915e-8■■■□□ 18.8
SMARCE1-208ENST00000474246 PTPRTO14522 1441 aa9.33□□□□□ -0.92
SMARCE1-208ENST00000474246 KDM2AQ9Y2K7 1162 aa9.33□□□□□ -0.92
SMARCE1-208ENST00000474246 UBTFP17480 764 aaKnown RBP9.32□□□□□ -0.92
SMARCE1-208ENST00000474246 FAM9AQ8IZU1 332 aaPredicted RBP9.31□□□□□ -0.92
SMARCE1-208ENST00000474246 UBAP1LF5GYI3 381 aa9.31□□□□□ -0.92
SMARCE1-208ENST00000474246 CDK11BP21127 795 aaKnown RBP9.31□□□□□ -0.92
SMARCE1-208ENST00000474246 HMGB1P09429 215 aaKnown RBP9.29□□□□□ -0.92
SMARCE1-208ENST00000474246 CHMP4AQ9BY43 222 aa9.28□□□□□ -0.92
SMARCE1-208ENST00000474246 PROM2Q8N271 834 aa9.27□□□□□ -0.93
SMARCE1-208ENST00000474246 HSPA1LP34931 641 aa9.24□□□□□ -0.93
SMARCE1-208ENST00000474246 BRD2P25440 801 aaKnown RBP9.23□□□□□ -0.93
SMARCE1-208ENST00000474246 YEATS2Q9ULM3 1422 aa9.23□□□□□ -0.93
SMARCE1-208ENST00000474246 COL17A1Q9UMD9 1497 aaPredicted RBP9.23□□□□□ -0.93
SMARCE1-208ENST00000474246 PEG3Q9GZU2 1588 aa9.22□□□□□ -0.93
SMARCE1-208ENST00000474246 RBM33Q96EV2 1170 aaKnown RBP9.22□□□□□ -0.93
SMARCE1-208ENST00000474246 PDE4CQ08493 712 aa9.22□□□□□ -0.93
SMARCE1-208ENST00000474246 UPF1Q92900 1129 aaKnown RBP eCLIP9.22□□□□□ -0.93
SMARCE1-208ENST00000474246 ZNF692Q9BU19 519 aaPredicted RBP9.22□□□□□ -0.93
SMARCE1-208ENST00000474246 MAGI1Q96QZ7 1491 aaPredicted RBP9.21□□□□□ -0.93
SMARCE1-208ENST00000474246 NEFLP07196 543 aa9.21□□□□□ -0.94
SMARCE1-208ENST00000474246 ADAMTSL3P82987 1691 aa9.2□□□□□ -0.94
SMARCE1-208ENST00000474246 HSP90B1P14625 803 aaKnown RBP9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms