RNA–Protein interactions for RNA: ENST00000474246.1

SMARCE1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 2,124 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-208ENST00000474246 AEBP2Q6ZN18 517 aaPredicted RBP16.01■□□□□ 0.15
SMARCE1-208ENST00000474246 CHIC1Q5VXU3 224 aa15.83■□□□□ 0.12
SMARCE1-208ENST00000474246 PHF23Q9BUL5 403 aaPredicted RBP13.99□□□□□ -0.17
SMARCE1-208ENST00000474246 DNAJC5Q9H3Z4 198 aa13.52□□□□□ -0.25
SMARCE1-208ENST00000474246 SENP3Q9H4L4 574 aaPredicted RBP13.47□□□□□ -0.25
SMARCE1-208ENST00000474246 DNAJC5BQ9UF47 199 aa13.18□□□□□ -0.3
SMARCE1-208ENST00000474246 POTEDQ86YR6 584 aa13.14□□□□□ -0.31
SMARCE1-208ENST00000474246 PLPPR3Q6T4P5 718 aa12.95□□□□□ -0.34
SMARCE1-208ENST00000474246 ABCC9O60706 1549 aa12.55□□□□□ -0.4
SMARCE1-208ENST00000474246 FOXD1Q16676 465 aa12.53□□□□□ -0.4
SMARCE1-208ENST00000474246 ADRA2BP18089 450 aa12.3□□□□□ -0.44
SMARCE1-208ENST00000474246 PPP6R1Q9UPN7 881 aa12.29□□□□□ -0.44
SMARCE1-208ENST00000474246 SLC24A1O60721 1099 aa12.28□□□□□ -0.44
SMARCE1-208ENST00000474246 TRIM41Q8WV44 630 aa12.15□□□□□ -0.46
SMARCE1-208ENST00000474246 NISCHQ9Y2I1 1504 aa11.91□□□□□ -0.5
SMARCE1-208ENST00000474246 PIAS4Q8N2W9 510 aaPredicted RBP11.89□□□□□ -0.51
SMARCE1-208ENST00000474246 MSH5O43196 834 aa11.87□□□□□ -0.51
SMARCE1-208ENST00000474246 ILDR1Q86SU0 546 aaPredicted RBP11.84□□□□□ -0.51
SMARCE1-208ENST00000474246 CUX2O14529 1486 aa11.67□□□□□ -0.54
SMARCE1-208ENST00000474246 CECR2Q9BXF3 1484 aa11.56□□□□□ -0.56
SMARCE1-208ENST00000474246 KCNA4P22459 653 aa11.54□□□□□ -0.56
SMARCE1-208ENST00000474246 PABPN1Q86U42 306 aaKnown RBP eCLIP11.54□□□□□ -0.56
SMARCE1-208ENST00000474246 PPP4R3CPQ6ZMV5 832 aa11.48□□□□□ -0.57
SMARCE1-208ENST00000474246 RB1CC1Q8TDY2 1594 aa11.34□□□□□ -0.59
SMARCE1-208ENST00000474246 DAXXQ9UER7 740 aaPredicted RBP11.3□□□□□ -0.6
SMARCE1-208ENST00000474246 CC2D2AQ9P2K1 1620 aa11.25□□□□□ -0.61
SMARCE1-208ENST00000474246 MYT1Q01538 1121 aa11.24□□□□□ -0.61
SMARCE1-208ENST00000474246 TTBK1Q5TCY1 1321 aaPredicted RBP11.23□□□□□ -0.61
SMARCE1-208ENST00000474246 SOCS7O14512 581 aa11.23□□□□□ -0.61
SMARCE1-208ENST00000474246 NCBP3Q53F19 620 aaKnown RBP11.2□□□□□ -0.62
SMARCE1-208ENST00000474246 SCAF1Q9H7N4 1312 aaKnown RBP11.15□□□□□ -0.62
SMARCE1-208ENST00000474246 LMTK3Q96Q04 1460 aa11.13□□□□□ -0.63
SMARCE1-208ENST00000474246 EHMT2Q96KQ7 1210 aa11.11□□□□□ -0.63
SMARCE1-208ENST00000474246 TRHP20396 242 aaPredicted RBP11.1□□□□□ -0.63
SMARCE1-208ENST00000474246 MAPK8IP2Q13387 824 aaPredicted RBP11.1□□□□□ -0.63
SMARCE1-208ENST00000474246 NPM3O75607 178 aaKnown RBP11.09□□□□□ -0.63
SMARCE1-208ENST00000474246 CNKSR2Q8WXI2 1034 aa11.06□□□□□ -0.64
SMARCE1-208ENST00000474246 ERCC6Q03468 1493 aa11.06□□□□□ -0.64
SMARCE1-208ENST00000474246 CCDC180Q9P1Z9 1646 aa11.03□□□□□ -0.64
SMARCE1-208ENST00000474246 SLC4A1APQ9BWU0 796 aaKnown RBP11.01□□□□□ -0.65
SMARCE1-208ENST00000474246 PELP1Q8IZL8 1130 aaKnown RBP11□□□□□ -0.65
SMARCE1-208ENST00000474246 FBXO41Q8TF61 875 aa10.96□□□□□ -0.66
SMARCE1-208ENST00000474246 BICRAQ9NZM4 1560 aa10.91□□□□□ -0.66
SMARCE1-208ENST00000474246 SHROOM4Q9ULL8 1493 aa10.88□□□□□ -0.67
SMARCE1-208ENST00000474246 NACADO15069 1562 aa10.88□□□□□ -0.67
SMARCE1-208ENST00000474246 RTN4Q9NQC3 1192 aaKnown RBP10.87□□□□□ -0.67
SMARCE1-208ENST00000474246 APLP2Q06481 763 aa10.87□□□□□ -0.67
SMARCE1-208ENST00000474246 OSCARQ8IYS5 282 aa10.87□□□□□ -0.67
SMARCE1-208ENST00000474246 ERICH6Q7L0X2 663 aa10.85□□□□□ -0.67
SMARCE1-208ENST00000474246 EIF4G1Q04637 1599 aaKnown RBP10.84□□□□□ -0.67
SMARCE1-208ENST00000474246 ILDR2Q71H61 639 aa10.82□□□□□ -0.68
SMARCE1-208ENST00000474246 UNC13AQ9UPW8 1703 aa10.81□□□□□ -0.68
SMARCE1-208ENST00000474246 DMRT2Q9Y5R5 561 aa10.8□□□□□ -0.68
SMARCE1-208ENST00000474246 AMER1Q5JTC6 1135 aaPredicted RBP10.78□□□□□ -0.68
SMARCE1-208ENST00000474246 RNF216Q9NWF9 866 aaPredicted RBP10.78□□□□□ -0.68
SMARCE1-208ENST00000474246 CSRNP3Q8WYN3 585 aa10.76□□□□□ -0.69
SMARCE1-208ENST00000474246 CACNB1Q02641 598 aaPredicted RBP10.75□□□□□ -0.69
SMARCE1-208ENST00000474246 RIMBP3CA6NJZ7 1639 aa10.74□□□□□ -0.69
SMARCE1-208ENST00000474246 RIMBP3BA6NNM3 1639 aa10.74□□□□□ -0.69
SMARCE1-208ENST00000474246 RIMBP3Q9UFD9 1639 aa10.74□□□□□ -0.69
SMARCE1-208ENST00000474246 ERCC6L2Q5T890 1561 aa10.71□□□□□ -0.7
SMARCE1-208ENST00000474246 DISP3Q9P2K9 1392 aa10.7□□□□□ -0.7
SMARCE1-208ENST00000474246 PRKCSHP14314 528 aaPredicted RBP10.7□□□□□ -0.7
SMARCE1-208ENST00000474246 HOXD11P31277 338 aaPredicted RBP10.66□□□□□ -0.7
SMARCE1-208ENST00000474246 ARXQ96QS3 562 aa10.66□□□□□ -0.7
SMARCE1-208ENST00000474246 ZBTB22O15209 634 aa10.64□□□□□ -0.71
SMARCE1-208ENST00000474246 CYB5RLQ6IPT4 315 aa10.62□□□□□ -0.71
SMARCE1-208ENST00000474246 BAZ1AQ9NRL2 1556 aaPredicted RBP10.61□□□□□ -0.71
SMARCE1-208ENST00000474246 ARHGEF11O15085 1522 aa10.56□□□□□ -0.72
SMARCE1-208ENST00000474246 THOC2Q8NI27 1593 aaKnown RBP10.52□□□□□ -0.73
SMARCE1-208ENST00000474246 FOXD4L1Q9NU39 408 aa10.49□□□□□ -0.73
SMARCE1-208ENST00000474246 KDM4FA0A1W2PPD8 638 aa10.46□□□□□ -0.74
SMARCE1-208ENST00000474246 SLC4A2P04920 1241 aa10.42□□□□□ -0.74
SMARCE1-208ENST00000474246 RANGAP1P46060 587 aaPredicted RBP10.42□□□□□ -0.74
SMARCE1-208ENST00000474246 DCAF8L1A6NGE4 600 aa10.42□□□□□ -0.74
SMARCE1-208ENST00000474246 DCAF8L2P0C7V8 631 aa10.37□□□□□ -0.75
SMARCE1-208ENST00000474246 HECW2Q9P2P5 1572 aa10.36□□□□□ -0.75
SMARCE1-208ENST00000474246 TIMELESSQ9UNS1 1208 aa10.34□□□□□ -0.75
SMARCE1-208ENST00000474246 ARAP1Q96P48 1450 aa10.33□□□□□ -0.76
SMARCE1-208ENST00000474246 SPATA31D1Q6ZQQ2 1576 aa10.33□□□□□ -0.76
SMARCE1-208ENST00000474246 SYNJ2O15056 1496 aa10.28□□□□□ -0.76
SMARCE1-208ENST00000474246 HOMEZQ8IX15 550 aa10.28□□□□□ -0.76
SMARCE1-208ENST00000474246 SMARCA2P51531 1590 aa10.25□□□□□ -0.77
SMARCE1-208ENST00000474246 NESP48681 1621 aa10.24□□□□□ -0.77
SMARCE1-208ENST00000474246 MYO15BQ96JP2 1530 aa10.23□□□□□ -0.77
SMARCE1-208ENST00000474246 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.22□□□□□ -0.77
SMARCE1-208ENST00000474246 MYCNP04198 464 aaPredicted RBP10.21□□□□□ -0.78
SMARCE1-208ENST00000474246 TAOK2Q9UL54 1235 aa10.2□□□□□ -0.78
SMARCE1-208ENST00000474246 TULP1O00294 542 aaPredicted RBP10.19□□□□□ -0.78
SMARCE1-208ENST00000474246 EIF5BO60841 1220 aaKnown RBP10.18□□□□□ -0.78
SMARCE1-208ENST00000474246 PDS5BQ9NTI5 1447 aa10.14□□□□□ -0.79
SMARCE1-208ENST00000474246 RNF39Q9H2S5 420 aa10.13□□□□□ -0.79
SMARCE1-208ENST00000474246 BCANQ96GW7 911 aa10.13□□□□□ -0.79
SMARCE1-208ENST00000474246 RSF1Q96T23 1441 aaPredicted RBP10.12□□□□□ -0.79
SMARCE1-208ENST00000474246 POTEHQ6S545 545 aa10.1□□□□□ -0.79
SMARCE1-208ENST00000474246 MRC2Q9UBG0 1479 aa10.09□□□□□ -0.79
SMARCE1-208ENST00000474246 U3KPZ7 1027 aaPredicted RBP10.08□□□□□ -0.8
SMARCE1-208ENST00000474246 LAMC3Q9Y6N6 1575 aa10.07□□□□□ -0.8
SMARCE1-208ENST00000474246 WDR62O43379 1518 aa10.07□□□□□ -0.8
SMARCE1-208ENST00000474246 NCAPD3P42695 1498 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms