RNA–Protein interactions for RNA: ENST00000473711.1

SP140-208, Transcript of SP140 nuclear body protein, humanhuman

TSL 2

Gene SP140, Length 644 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP140-208ENST00000473711 CARMIL1Q5VZK9 1371 aa17.3■□□□□ 0.36
SP140-208ENST00000473711 ZNF608Q9ULD9 1512 aaPredicted RBP17.3■□□□□ 0.36
SP140-208ENST00000473711 RAPGEF2Q9Y4G8 1499 aa17.3■□□□□ 0.36
SP140-208ENST00000473711 KIF21BO75037 1637 aa17.29■□□□□ 0.36
SP140-208ENST00000473711 KCNA4P22459 653 aa17.29■□□□□ 0.36
SP140-208ENST00000473711 ABCA5Q8WWZ7 1642 aa17.28■□□□□ 0.36
SP140-208ENST00000473711 TNIKQ9UKE5 1360 aa17.25■□□□□ 0.35
SP140-208ENST00000473711 ERICH3Q5RHP9 1530 aa17.22■□□□□ 0.35
SP140-208ENST00000473711 GRIN2BQ13224 1484 aa17.21■□□□□ 0.35
SP140-208ENST00000473711 RNF39Q9H2S5 420 aa17.21■□□□□ 0.35
SP140-208ENST00000473711 CACNB1Q02641 598 aaPredicted RBP17.19■□□□□ 0.34
SP140-208ENST00000473711 EIF4G3O43432 1585 aaKnown RBP17.17■□□□□ 0.34
SP140-208ENST00000473711 CUL7Q14999 1698 aa17.16■□□□□ 0.34
SP140-208ENST00000473711 PBRM1Q86U86 1689 aa17.16■□□□□ 0.34
SP140-208ENST00000473711 RANGAP1P46060 587 aaPredicted RBP17.15■□□□□ 0.34
SP140-208ENST00000473711 FHAD1B1AJZ9 1412 aa17.13■□□□□ 0.33
SP140-208ENST00000473711 CEP162Q5TB80 1403 aa17.13■□□□□ 0.33
SP140-208ENST00000473711 SNAPC4Q5SXM2 1469 aa17.12■□□□□ 0.33
SP140-208ENST00000473711 ADAMTS12P58397 1594 aa17.07■□□□□ 0.32
SP140-208ENST00000473711 CHMP7Q8WUX9 453 aaPredicted RBP17.07■□□□□ 0.32
SP140-208ENST00000473711 FBLN2P98095 1184 aa17.06■□□□□ 0.32
SP140-208ENST00000473711 MAGI1Q96QZ7 1491 aaPredicted RBP17.05■□□□□ 0.32
SP140-208ENST00000473711 CLIP1P30622 1438 aa17.05■□□□□ 0.32
SP140-208ENST00000473711 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.03■□□□□ 0.32
SP140-208ENST00000473711 SYNJ2O15056 1496 aa17.01■□□□□ 0.31
SP140-208ENST00000473711 C1QBPQ07021 282 aaKnown RBP16.99■□□□□ 0.31
SP140-208ENST00000473711 GRIN2AQ12879 1464 aa16.99■□□□□ 0.31
SP140-208ENST00000473711 P3H3Q8IVL6 736 aa16.94■□□□□ 0.3
SP140-208ENST00000473711 CTTNBP2Q8WZ74 1663 aa16.93■□□□□ 0.3
SP140-208ENST00000473711 ARHGAP35Q9NRY4 1499 aa16.92■□□□□ 0.3
SP140-208ENST00000473711 KIAA0586Q9BVV6 1533 aa16.89■□□□□ 0.29
SP140-208ENST00000473711 ARAP1Q96P48 1450 aa16.88■□□□□ 0.29
SP140-208ENST00000473711 NUP160Q12769 1436 aa16.87■□□□□ 0.29
SP140-208ENST00000473711 CEP170Q5SW79 1584 aa16.87■□□□□ 0.29
SP140-208ENST00000473711 IQGAP2Q13576 1575 aa16.85■□□□□ 0.29
SP140-208ENST00000473711 VPS8Q8N3P4 1428 aa16.85■□□□□ 0.29
SP140-208ENST00000473711 CHD1O14646 1710 aa16.83■□□□□ 0.28
SP140-208ENST00000473711 FHOD3Q2V2M9 1422 aa16.82■□□□□ 0.28
SP140-208ENST00000473711 PPARGC1BQ86YN6 1023 aaKnown RBP16.82■□□□□ 0.28
SP140-208ENST00000473711 JPH4Q96JJ6 628 aa16.82■□□□□ 0.28
SP140-208ENST00000473711 EFCAB5A4FU69 1503 aa16.81■□□□□ 0.28
SP140-208ENST00000473711 UGGT2Q9NYU1 1516 aa16.79■□□□□ 0.28
SP140-208ENST00000473711 SAMD9Q5K651 1589 aa16.77■□□□□ 0.28
SP140-208ENST00000473711 APLP2Q06481 763 aa16.77■□□□□ 0.28
SP140-208ENST00000473711 ATP1B4Q9UN42 357 aaPredicted RBP16.75■□□□□ 0.27
SP140-208ENST00000473711 TTBK1Q5TCY1 1321 aaPredicted RBP16.74■□□□□ 0.27
SP140-208ENST00000473711 DISP1Q96F81 1524 aa16.73■□□□□ 0.27
SP140-208ENST00000473711 FMN1Q68DA7 1419 aa16.7■□□□□ 0.26
SP140-208ENST00000473711 OSCARQ8IYS5 282 aa16.7■□□□□ 0.26
SP140-208ENST00000473711 CARMIL2Q6F5E8 1435 aa16.7■□□□□ 0.26
SP140-208ENST00000473711 KIAA0556O60303 1618 aa16.69■□□□□ 0.26
SP140-208ENST00000473711 PRG4Q92954 1404 aaPredicted RBP16.69■□□□□ 0.26
SP140-208ENST00000473711 CASKIN1Q8WXD9 1431 aa16.66■□□□□ 0.26
SP140-208ENST00000473711 U3KPZ7 1027 aaPredicted RBP16.66■□□□□ 0.26
SP140-208ENST00000473711 CLASP1Q7Z460 1538 aa16.65■□□□□ 0.26
SP140-208ENST00000473711 PCF11O94913 1555 aaKnown RBP16.64■□□□□ 0.25
SP140-208ENST00000473711 KANK4Q5T7N3 995 aaPredicted RBP16.63■□□□□ 0.25
SP140-208ENST00000473711 TRIM26Q12899 539 aaPredicted RBP16.62■□□□□ 0.25
SP140-208ENST00000473711 SHROOM2Q13796 1616 aa16.62■□□□□ 0.25
SP140-208ENST00000473711 FYCO1Q9BQS8 1478 aa16.61■□□□□ 0.25
SP140-208ENST00000473711 SLC4A2P04920 1241 aa16.6■□□□□ 0.25
SP140-208ENST00000473711 ARID3CA6NKF2 412 aa16.58■□□□□ 0.24
SP140-208ENST00000473711 PCGF6Q9BYE7 350 aa16.58■□□□□ 0.24
SP140-208ENST00000473711 PTPRGP23470 1445 aa16.58■□□□□ 0.24
SP140-208ENST00000473711 ERCC6L2Q5T890 1561 aa16.57■□□□□ 0.24
SP140-208ENST00000473711 MAP3K1Q13233 1512 aa16.55■□□□□ 0.24
SP140-208ENST00000473711 RIMBP3CA6NJZ7 1639 aa16.55■□□□□ 0.24
SP140-208ENST00000473711 RIMBP3BA6NNM3 1639 aa16.55■□□□□ 0.24
SP140-208ENST00000473711 RIMBP3Q9UFD9 1639 aa16.55■□□□□ 0.24
SP140-208ENST00000473711 TIAM1Q13009 1591 aa16.55■□□□□ 0.24
SP140-208ENST00000473711 PLB1Q6P1J6 1458 aa16.54■□□□□ 0.24
SP140-208ENST00000473711 HECW1Q76N89 1606 aa16.52■□□□□ 0.23
SP140-208ENST00000473711 LRRC9Q6ZRR7 1453 aa16.51■□□□□ 0.23
SP140-208ENST00000473711 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.51■□□□□ 0.23
SP140-208ENST00000473711 HNRNPUL2Q1KMD3 747 aaKnown RBP16.51■□□□□ 0.23
SP140-208ENST00000473711 RAPGEF6Q8TEU7 1601 aa16.51■□□□□ 0.23
SP140-208ENST00000473711 EPRSP07814 1512 aaKnown RBP16.5■□□□□ 0.23
SP140-208ENST00000473711 NUP153P49790 1475 aaKnown RBP16.48■□□□□ 0.23
SP140-208ENST00000473711 CCDC18Q5T9S5 1454 aa16.48■□□□□ 0.23
SP140-208ENST00000473711 CFAP43Q8NDM7 1665 aa16.48■□□□□ 0.23
SP140-208ENST00000473711 LRRIQ1Q96JM4 1722 aa16.48■□□□□ 0.23
SP140-208ENST00000473711 ABCA8O94911 1581 aa16.47■□□□□ 0.23
SP140-208ENST00000473711 CDK13Q14004 1512 aaKnown RBP16.47■□□□□ 0.23
SP140-208ENST00000473711 MTUS2Q5JR59 1369 aa16.47■□□□□ 0.23
SP140-208ENST00000473711 UACAQ9BZF9 1416 aa16.46■□□□□ 0.23
SP140-208ENST00000473711 CDK11AQ9UQ88 783 aaPredicted RBP16.43■□□□□ 0.22
SP140-208ENST00000473711 ATP10BO94823 1461 aa16.41■□□□□ 0.22
SP140-208ENST00000473711 MAGI3Q5TCQ9 1506 aa16.4■□□□□ 0.22
SP140-208ENST00000473711 SLC4A1APQ9BWU0 796 aaKnown RBP16.39■□□□□ 0.21
SP140-208ENST00000473711 PLEKHD1A6NEE1 506 aa16.38■□□□□ 0.21
SP140-208ENST00000473711 PHLDB1Q86UU1 1377 aa16.38■□□□□ 0.21
SP140-208ENST00000473711 EHBP1L1Q8N3D4 1523 aa16.37■□□□□ 0.21
SP140-208ENST00000473711 ABCC2Q92887 1545 aa16.37■□□□□ 0.21
SP140-208ENST00000473711 UHRF1BP1LA0JNW5 1464 aa16.35■□□□□ 0.21
SP140-208ENST00000473711 ARHGEF11O15085 1522 aa16.35■□□□□ 0.21
SP140-208ENST00000473711 CAPN15O75808 1086 aa16.34■□□□□ 0.21
SP140-208ENST00000473711 SPINK5Q9NQ38 1064 aaPredicted RBP16.34■□□□□ 0.21
SP140-208ENST00000473711 NCOA2Q15596 1464 aa16.34■□□□□ 0.21
SP140-208ENST00000473711 TROQ12816 1431 aaPredicted RBP16.33■□□□□ 0.2
SP140-208ENST00000473711 SUPT6HQ7KZ85 1726 aaKnown RBP16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms