RNA–Protein interactions for RNA: ENST00000473598.6

LMNA-213, Transcript of lamin A/C, humanhuman

TSL 2 BASIC

Gene LMNA, Length 2,015 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-213ENST00000473598 GRIN2AQ12879 1464 aa23.61■■□□□ 1.37
LMNA-213ENST00000473598 DNAJC5Q9H3Z4 198 aa23.59■■□□□ 1.37
LMNA-213ENST00000473598 CEP162Q5TB80 1403 aa23.55■■□□□ 1.36
LMNA-213ENST00000473598 CEP170Q5SW79 1584 aa23.52■■□□□ 1.36
LMNA-213ENST00000473598 NUP160Q12769 1436 aa23.48■■□□□ 1.35
LMNA-213ENST00000473598 CTTNBP2Q8WZ74 1663 aa23.47■■□□□ 1.35
LMNA-213ENST00000473598 CLASP1Q7Z460 1538 aa23.47■■□□□ 1.35
LMNA-213ENST00000473598 CLIP1P30622 1438 aa23.42■■□□□ 1.34
LMNA-213ENST00000473598 RANGAP1P46060 587 aaPredicted RBP23.35■■□□□ 1.33
LMNA-213ENST00000473598 HRCP23327 699 aa23.33■■□□□ 1.32
LMNA-213ENST00000473598 ARHGEF11O15085 1522 aa23.32■■□□□ 1.32
LMNA-213ENST00000473598 KIAA0586Q9BVV6 1533 aa23.31■■□□□ 1.32
LMNA-213ENST00000473598 RIMBP3CA6NJZ7 1639 aa23.29■■□□□ 1.32
LMNA-213ENST00000473598 RIMBP3BA6NNM3 1639 aa23.29■■□□□ 1.32
LMNA-213ENST00000473598 RIMBP3Q9UFD9 1639 aa23.29■■□□□ 1.32
LMNA-213ENST00000473598 ARHGAP35Q9NRY4 1499 aa23.28■■□□□ 1.32
LMNA-213ENST00000473598 SHROOM2Q13796 1616 aa23.27■■□□□ 1.32
LMNA-213ENST00000473598 JPH4Q96JJ6 628 aa23.26■■□□□ 1.31
LMNA-213ENST00000473598 ERCC6L2Q5T890 1561 aa23.26■■□□□ 1.31
LMNA-213ENST00000473598 IQGAP2Q13576 1575 aa23.26■■□□□ 1.31
LMNA-213ENST00000473598 MYT1Q01538 1121 aa23.25■■□□□ 1.31
LMNA-213ENST00000473598 ARAP1Q96P48 1450 aa23.23■■□□□ 1.31
LMNA-213ENST00000473598 EFCAB5A4FU69 1503 aa23.23■■□□□ 1.31
LMNA-213ENST00000473598 PRG4Q92954 1404 aaPredicted RBP23.21■■□□□ 1.31
LMNA-213ENST00000473598 VPS8Q8N3P4 1428 aa23.19■■□□□ 1.3
LMNA-213ENST00000473598 SAMD9Q5K651 1589 aa23.19■■□□□ 1.3
LMNA-213ENST00000473598 UGGT2Q9NYU1 1516 aa23.14■■□□□ 1.3
LMNA-213ENST00000473598 CYB5RLQ6IPT4 315 aa23.12■■□□□ 1.29
LMNA-213ENST00000473598 P3H3Q8IVL6 736 aa23.09■■□□□ 1.29
LMNA-213ENST00000473598 DISP1Q96F81 1524 aa23.09■■□□□ 1.29
LMNA-213ENST00000473598 FHOD3Q2V2M9 1422 aa23.09■■□□□ 1.29
LMNA-213ENST00000473598 TTBK1Q5TCY1 1321 aaPredicted RBP23.04■■□□□ 1.28
LMNA-213ENST00000473598 KIAA0556O60303 1618 aa23.03■■□□□ 1.28
LMNA-213ENST00000473598 CARMIL2Q6F5E8 1435 aa23.03■■□□□ 1.28
LMNA-213ENST00000473598 FMN1Q68DA7 1419 aa22.99■■□□□ 1.27
LMNA-213ENST00000473598 PCF11O94913 1555 aaKnown RBP22.97■■□□□ 1.27
LMNA-213ENST00000473598 PTPRGP23470 1445 aa22.95■■□□□ 1.26
LMNA-213ENST00000473598 FYCO1Q9BQS8 1478 aa22.92■■□□□ 1.26
LMNA-213ENST00000473598 APLP2Q06481 763 aa22.92■■□□□ 1.26
LMNA-213ENST00000473598 PCGF6Q9BYE7 350 aa22.92■■□□□ 1.26
LMNA-213ENST00000473598 CASKIN1Q8WXD9 1431 aa22.92■■□□□ 1.26
LMNA-213ENST00000473598 PPARGC1BQ86YN6 1023 aaKnown RBP22.91■■□□□ 1.26
LMNA-213ENST00000473598 MAP3K1Q13233 1512 aa22.86■■□□□ 1.25
LMNA-213ENST00000473598 TIAM1Q13009 1591 aa22.84■■□□□ 1.25
LMNA-213ENST00000473598 ADCY10Q96PN6 1610 aa22.84■■□□□ 1.25
LMNA-213ENST00000473598 CFAP43Q8NDM7 1665 aa22.84■■□□□ 1.25
LMNA-213ENST00000473598 LRRIQ1Q96JM4 1722 aa22.84■■□□□ 1.25
LMNA-213ENST00000473598 PLB1Q6P1J6 1458 aa22.82■■□□□ 1.24
LMNA-213ENST00000473598 HECW1Q76N89 1606 aa22.81■■□□□ 1.24
LMNA-213ENST00000473598 ATP1B4Q9UN42 357 aaPredicted RBP22.81■■□□□ 1.24
LMNA-213ENST00000473598 UACAQ9BZF9 1416 aa22.79■■□□□ 1.24
LMNA-213ENST00000473598 RAPGEF6Q8TEU7 1601 aa22.78■■□□□ 1.24
LMNA-213ENST00000473598 TRIM26Q12899 539 aaPredicted RBP22.76■■□□□ 1.23
LMNA-213ENST00000473598 KANK4Q5T7N3 995 aaPredicted RBP22.75■■□□□ 1.23
LMNA-213ENST00000473598 ABCC2Q92887 1545 aa22.75■■□□□ 1.23
LMNA-213ENST00000473598 ABCA8O94911 1581 aa22.74■■□□□ 1.23
LMNA-213ENST00000473598 UHRF1BP1LA0JNW5 1464 aa22.72■■□□□ 1.23
LMNA-213ENST00000473598 CCDC18Q5T9S5 1454 aa22.72■■□□□ 1.23
LMNA-213ENST00000473598 LRRC9Q6ZRR7 1453 aa22.72■■□□□ 1.23
LMNA-213ENST00000473598 EPRSP07814 1512 aaKnown RBP22.7■■□□□ 1.23
LMNA-213ENST00000473598 ARID3CA6NKF2 412 aa22.7■■□□□ 1.22
LMNA-213ENST00000473598 NUP153P49790 1475 aaKnown RBP22.69■■□□□ 1.22
LMNA-213ENST00000473598 NPM1P06748 294 aaKnown RBP eCLIP22.67■■□□□ 1.22
LMNA-213ENST00000473598 CDK13Q14004 1512 aaKnown RBP22.65■■□□□ 1.22
LMNA-213ENST00000473598 KDM5BQ9UGL1 1544 aa22.64■■□□□ 1.22
LMNA-213ENST00000473598 ZCCHC11Q5TAX3 1644 aaKnown RBP22.63■■□□□ 1.21
LMNA-213ENST00000473598 MTUS2Q5JR59 1369 aa22.59■■□□□ 1.21
LMNA-213ENST00000473598 MAGI3Q5TCQ9 1506 aa22.59■■□□□ 1.21
LMNA-213ENST00000473598 EHBP1L1Q8N3D4 1523 aa22.59■■□□□ 1.21
LMNA-213ENST00000473598 MAPKBP1O60336 1514 aa22.58■■□□□ 1.21
LMNA-213ENST00000473598 ATP10BO94823 1461 aa22.58■■□□□ 1.21
LMNA-213ENST00000473598 ASXL2Q76L83 1435 aa22.56■■□□□ 1.2
LMNA-213ENST00000473598 TRHP20396 242 aaPredicted RBP22.56■■□□□ 1.2
LMNA-213ENST00000473598 SUPT6HQ7KZ85 1726 aaKnown RBP22.54■■□□□ 1.2
LMNA-213ENST00000473598 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.53■■□□□ 1.2
LMNA-213ENST00000473598 HNRNPUL2Q1KMD3 747 aaKnown RBP22.53■■□□□ 1.2
LMNA-213ENST00000473598 CDK11AQ9UQ88 783 aaPredicted RBP22.5■■□□□ 1.19
LMNA-213ENST00000473598 PHLDB1Q86UU1 1377 aa22.48■■□□□ 1.19
LMNA-213ENST00000473598 NCOA2Q15596 1464 aa22.47■■□□□ 1.19
LMNA-213ENST00000473598 ABCC10Q5T3U5 1492 aa22.47■■□□□ 1.19
LMNA-213ENST00000473598 WDR7Q9Y4E6 1490 aa22.47■■□□□ 1.19
LMNA-213ENST00000473598 RRBP1Q9P2E9 1410 aaKnown RBP22.47■■□□□ 1.19
LMNA-213ENST00000473598 DIP2BQ9P265 1576 aa22.46■■□□□ 1.19
LMNA-213ENST00000473598 KIF13AQ9H1H9 1805 aa22.45■■□□□ 1.18
LMNA-213ENST00000473598 FAM69CQ0P6D2 419 aa22.45■■□□□ 1.18
LMNA-213ENST00000473598 TROQ12816 1431 aaPredicted RBP22.44■■□□□ 1.18
LMNA-213ENST00000473598 KCNH8Q96L42 1107 aa22.43■■□□□ 1.18
LMNA-213ENST00000473598 PLEKHD1A6NEE1 506 aa22.4■■□□□ 1.18
LMNA-213ENST00000473598 CCNB3Q8WWL7 1395 aa22.4■■□□□ 1.18
LMNA-213ENST00000473598 KIF14Q15058 1648 aa22.37■■□□□ 1.17
LMNA-213ENST00000473598 MYOM3Q5VTT5 1437 aa22.37■■□□□ 1.17
LMNA-213ENST00000473598 FGD6Q6ZV73 1430 aa22.34■■□□□ 1.17
LMNA-213ENST00000473598 GLI2P10070 1586 aa22.32■■□□□ 1.16
LMNA-213ENST00000473598 SCAF1Q9H7N4 1312 aaKnown RBP22.31■■□□□ 1.16
LMNA-213ENST00000473598 TSPOAP1O95153 1857 aa22.3■■□□□ 1.16
LMNA-213ENST00000473598 ITSN2Q9NZM3 1697 aa22.29■■□□□ 1.16
LMNA-213ENST00000473598 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.29■■□□□ 1.16
LMNA-213ENST00000473598 MAP3K4Q9Y6R4 1608 aa22.28■■□□□ 1.16
LMNA-213ENST00000473598 PTPN23Q9H3S7 1636 aa22.28■■□□□ 1.16
LMNA-213ENST00000473598 MIA2Q96PC5 1412 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms