RNA–Protein interactions for RNA: ENST00000469529.6

TRAF4-208, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-208ENST00000469529 ARHGEF11O15085 1522 aa20.52■□□□□ 0.87
TRAF4-208ENST00000469529 SYNJ2O15056 1496 aa20.5■□□□□ 0.87
TRAF4-208ENST00000469529 ADAMTS12P58397 1594 aa20.46■□□□□ 0.87
TRAF4-208ENST00000469529 EHMT2Q96KQ7 1210 aa20.45■□□□□ 0.86
TRAF4-208ENST00000469529 CLASP1Q7Z460 1538 aa20.41■□□□□ 0.86
TRAF4-208ENST00000469529 GRIN2AQ12879 1464 aa20.39■□□□□ 0.85
TRAF4-208ENST00000469529 CEP162Q5TB80 1403 aa20.38■□□□□ 0.85
TRAF4-208ENST00000469529 CYB5RLQ6IPT4 315 aa20.37■□□□□ 0.85
TRAF4-208ENST00000469529 ARAP1Q96P48 1450 aa20.34■□□□□ 0.85
TRAF4-208ENST00000469529 NUP160Q12769 1436 aa20.34■□□□□ 0.85
TRAF4-208ENST00000469529 KIAA0586Q9BVV6 1533 aa20.33■□□□□ 0.85
TRAF4-208ENST00000469529 CLIP1P30622 1438 aa20.32■□□□□ 0.84
TRAF4-208ENST00000469529 CEP170Q5SW79 1584 aa20.24■□□□□ 0.83
TRAF4-208ENST00000469529 ARHGAP35Q9NRY4 1499 aa20.21■□□□□ 0.83
TRAF4-208ENST00000469529 UGGT2Q9NYU1 1516 aa20.19■□□□□ 0.82
TRAF4-208ENST00000469529 JPH4Q96JJ6 628 aa20.19■□□□□ 0.82
TRAF4-208ENST00000469529 CTTNBP2Q8WZ74 1663 aa20.19■□□□□ 0.82
TRAF4-208ENST00000469529 EFCAB5A4FU69 1503 aa20.18■□□□□ 0.82
TRAF4-208ENST00000469529 IQGAP2Q13576 1575 aa20.18■□□□□ 0.82
TRAF4-208ENST00000469529 VPS8Q8N3P4 1428 aa20.12■□□□□ 0.81
TRAF4-208ENST00000469529 RANGAP1P46060 587 aaPredicted RBP20.12■□□□□ 0.81
TRAF4-208ENST00000469529 ERCC6L2Q5T890 1561 aa20.12■□□□□ 0.81
TRAF4-208ENST00000469529 SHROOM2Q13796 1616 aa20.11■□□□□ 0.81
TRAF4-208ENST00000469529 SAMD9Q5K651 1589 aa20.11■□□□□ 0.81
TRAF4-208ENST00000469529 CARMIL2Q6F5E8 1435 aa20.07■□□□□ 0.8
TRAF4-208ENST00000469529 DISP1Q96F81 1524 aa20.07■□□□□ 0.8
TRAF4-208ENST00000469529 TRHP20396 242 aaPredicted RBP20.06■□□□□ 0.8
TRAF4-208ENST00000469529 FMN1Q68DA7 1419 aa20.06■□□□□ 0.8
TRAF4-208ENST00000469529 PRG4Q92954 1404 aaPredicted RBP20.04■□□□□ 0.8
TRAF4-208ENST00000469529 P3H3Q8IVL6 736 aa20.03■□□□□ 0.8
TRAF4-208ENST00000469529 FHOD3Q2V2M9 1422 aa20.02■□□□□ 0.79
TRAF4-208ENST00000469529 CASKIN1Q8WXD9 1431 aa19.97■□□□□ 0.79
TRAF4-208ENST00000469529 KIAA0556O60303 1618 aa19.97■□□□□ 0.79
TRAF4-208ENST00000469529 MAP3K1Q13233 1512 aa19.93■□□□□ 0.78
TRAF4-208ENST00000469529 APLP2Q06481 763 aa19.92■□□□□ 0.78
TRAF4-208ENST00000469529 FYCO1Q9BQS8 1478 aa19.91■□□□□ 0.78
TRAF4-208ENST00000469529 PTPRGP23470 1445 aa19.89■□□□□ 0.77
TRAF4-208ENST00000469529 PCF11O94913 1555 aaKnown RBP19.78■□□□□ 0.76
TRAF4-208ENST00000469529 CCDC18Q5T9S5 1454 aa19.78■□□□□ 0.76
TRAF4-208ENST00000469529 ABCA8O94911 1581 aa19.78■□□□□ 0.76
TRAF4-208ENST00000469529 UACAQ9BZF9 1416 aa19.77■□□□□ 0.76
TRAF4-208ENST00000469529 NPM1P06748 294 aaKnown RBP eCLIP19.77■□□□□ 0.76
TRAF4-208ENST00000469529 PLB1Q6P1J6 1458 aa19.76■□□□□ 0.75
TRAF4-208ENST00000469529 KANK4Q5T7N3 995 aaPredicted RBP19.76■□□□□ 0.75
TRAF4-208ENST00000469529 ADCY10Q96PN6 1610 aa19.76■□□□□ 0.75
TRAF4-208ENST00000469529 TTBK1Q5TCY1 1321 aaPredicted RBP19.76■□□□□ 0.75
TRAF4-208ENST00000469529 NUP153P49790 1475 aaKnown RBP19.75■□□□□ 0.75
TRAF4-208ENST00000469529 ATP1B4Q9UN42 357 aaPredicted RBP19.75■□□□□ 0.75
TRAF4-208ENST00000469529 EPRSP07814 1512 aaKnown RBP19.75■□□□□ 0.75
TRAF4-208ENST00000469529 UHRF1BP1LA0JNW5 1464 aa19.74■□□□□ 0.75
TRAF4-208ENST00000469529 TIAM1Q13009 1591 aa19.74■□□□□ 0.75
TRAF4-208ENST00000469529 HECW1Q76N89 1606 aa19.73■□□□□ 0.75
TRAF4-208ENST00000469529 RAPGEF6Q8TEU7 1601 aa19.73■□□□□ 0.75
TRAF4-208ENST00000469529 CDK11AQ9UQ88 783 aaPredicted RBP19.72■□□□□ 0.75
TRAF4-208ENST00000469529 LRRC9Q6ZRR7 1453 aa19.72■□□□□ 0.75
TRAF4-208ENST00000469529 MAPKBP1O60336 1514 aa19.69■□□□□ 0.74
TRAF4-208ENST00000469529 TRIM26Q12899 539 aaPredicted RBP19.68■□□□□ 0.74
TRAF4-208ENST00000469529 ATP10BO94823 1461 aa19.67■□□□□ 0.74
TRAF4-208ENST00000469529 KIF13AQ9H1H9 1805 aa19.67■□□□□ 0.74
TRAF4-208ENST00000469529 PPARGC1BQ86YN6 1023 aaKnown RBP19.66■□□□□ 0.74
TRAF4-208ENST00000469529 ABCC2Q92887 1545 aa19.66■□□□□ 0.74
TRAF4-208ENST00000469529 ABCC10Q5T3U5 1492 aa19.64■□□□□ 0.73
TRAF4-208ENST00000469529 CFAP43Q8NDM7 1665 aa19.64■□□□□ 0.73
TRAF4-208ENST00000469529 MTUS2Q5JR59 1369 aa19.63■□□□□ 0.73
TRAF4-208ENST00000469529 FAM69CQ0P6D2 419 aa19.63■□□□□ 0.73
TRAF4-208ENST00000469529 KDM5BQ9UGL1 1544 aa19.62■□□□□ 0.73
TRAF4-208ENST00000469529 PLEKHD1A6NEE1 506 aa19.62■□□□□ 0.73
TRAF4-208ENST00000469529 DIP2BQ9P265 1576 aa19.59■□□□□ 0.73
TRAF4-208ENST00000469529 CDK13Q14004 1512 aaKnown RBP19.58■□□□□ 0.73
TRAF4-208ENST00000469529 LRRIQ1Q96JM4 1722 aa19.58■□□□□ 0.72
TRAF4-208ENST00000469529 TROQ12816 1431 aaPredicted RBP19.58■□□□□ 0.72
TRAF4-208ENST00000469529 EHBP1L1Q8N3D4 1523 aa19.57■□□□□ 0.72
TRAF4-208ENST00000469529 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.57■□□□□ 0.72
TRAF4-208ENST00000469529 HNRNPUL2Q1KMD3 747 aaKnown RBP19.57■□□□□ 0.72
TRAF4-208ENST00000469529 MAGI3Q5TCQ9 1506 aa19.56■□□□□ 0.72
TRAF4-208ENST00000469529 ASXL2Q76L83 1435 aa19.53■□□□□ 0.72
TRAF4-208ENST00000469529 ARID3CA6NKF2 412 aa19.53■□□□□ 0.72
TRAF4-208ENST00000469529 RRBP1Q9P2E9 1410 aaKnown RBP19.51■□□□□ 0.71
TRAF4-208ENST00000469529 NCOA2Q15596 1464 aa19.51■□□□□ 0.71
TRAF4-208ENST00000469529 PHLDB1Q86UU1 1377 aa19.5■□□□□ 0.71
TRAF4-208ENST00000469529 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.5■□□□□ 0.71
TRAF4-208ENST00000469529 ZCCHC11Q5TAX3 1644 aaKnown RBP19.47■□□□□ 0.71
TRAF4-208ENST00000469529 MIA2Q96PC5 1412 aa19.45■□□□□ 0.7
TRAF4-208ENST00000469529 PCGF6Q9BYE7 350 aa19.45■□□□□ 0.7
TRAF4-208ENST00000469529 TSPOAP1O95153 1857 aa19.45■□□□□ 0.7
TRAF4-208ENST00000469529 SUPT6HQ7KZ85 1726 aaKnown RBP19.45■□□□□ 0.7
TRAF4-208ENST00000469529 CCNB3Q8WWL7 1395 aa19.44■□□□□ 0.7
TRAF4-208ENST00000469529 MYOM3Q5VTT5 1437 aa19.44■□□□□ 0.7
TRAF4-208ENST00000469529 GLI2P10070 1586 aa19.44■□□□□ 0.7
TRAF4-208ENST00000469529 FGD6Q6ZV73 1430 aa19.41■□□□□ 0.7
TRAF4-208ENST00000469529 GPATCH8Q9UKJ3 1502 aaKnown RBP19.38■□□□□ 0.69
TRAF4-208ENST00000469529 WDR7Q9Y4E6 1490 aa19.38■□□□□ 0.69
TRAF4-208ENST00000469529 KDM6BO15054 1643 aa19.36■□□□□ 0.69
TRAF4-208ENST00000469529 KIF14Q15058 1648 aa19.35■□□□□ 0.69
TRAF4-208ENST00000469529 TCOF1Q13428 1488 aaKnown RBP19.35■□□□□ 0.69
TRAF4-208ENST00000469529 PPRC1Q5VV67 1664 aaKnown RBP19.34■□□□□ 0.69
TRAF4-208ENST00000469529 KCNH8Q96L42 1107 aa19.33■□□□□ 0.68
TRAF4-208ENST00000469529 CFDP1Q9UEE9 299 aaPredicted RBP19.33■□□□□ 0.68
TRAF4-208ENST00000469529 MAP3K4Q9Y6R4 1608 aa19.33■□□□□ 0.68
TRAF4-208ENST00000469529 PLCH2O75038 1416 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 127.7 ms