RNA–Protein interactions for RNA: ENST00000466415.1

VPS16-206, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS16, Length 708 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-206ENST00000466415 CLIP1P30622 1438 aa19.35■□□□□ 0.69
VPS16-206ENST00000466415 RANGAP1P46060 587 aaPredicted RBP19.34■□□□□ 0.69
VPS16-206ENST00000466415 CHD1O14646 1710 aa19.3■□□□□ 0.68
VPS16-206ENST00000466415 IQGAP2Q13576 1575 aa19.28■□□□□ 0.68
VPS16-206ENST00000466415 CEP170Q5SW79 1584 aa19.27■□□□□ 0.67
VPS16-206ENST00000466415 NUP160Q12769 1436 aa19.26■□□□□ 0.67
VPS16-206ENST00000466415 KIAA0586Q9BVV6 1533 aa19.25■□□□□ 0.67
VPS16-206ENST00000466415 EFCAB5A4FU69 1503 aa19.24■□□□□ 0.67
VPS16-206ENST00000466415 ARHGAP35Q9NRY4 1499 aa19.22■□□□□ 0.67
VPS16-206ENST00000466415 ARAP1Q96P48 1450 aa19.18■□□□□ 0.66
VPS16-206ENST00000466415 UGGT2Q9NYU1 1516 aa19.16■□□□□ 0.66
VPS16-206ENST00000466415 SAMD9Q5K651 1589 aa19.16■□□□□ 0.66
VPS16-206ENST00000466415 VPS8Q8N3P4 1428 aa19.15■□□□□ 0.66
VPS16-206ENST00000466415 FHOD3Q2V2M9 1422 aa19.12■□□□□ 0.65
VPS16-206ENST00000466415 P3H3Q8IVL6 736 aa19.12■□□□□ 0.65
VPS16-206ENST00000466415 KIAA0556O60303 1618 aa19.09■□□□□ 0.65
VPS16-206ENST00000466415 CLASP1Q7Z460 1538 aa19.08■□□□□ 0.64
VPS16-206ENST00000466415 CARMIL2Q6F5E8 1435 aa19.08■□□□□ 0.64
VPS16-206ENST00000466415 JPH4Q96JJ6 628 aa19.07■□□□□ 0.64
VPS16-206ENST00000466415 FMN1Q68DA7 1419 aa19.05■□□□□ 0.64
VPS16-206ENST00000466415 DISP1Q96F81 1524 aa19.05■□□□□ 0.64
VPS16-206ENST00000466415 SHROOM2Q13796 1616 aa19.03■□□□□ 0.64
VPS16-206ENST00000466415 PRG4Q92954 1404 aaPredicted RBP19.01■□□□□ 0.63
VPS16-206ENST00000466415 APLP2Q06481 763 aa19■□□□□ 0.63
VPS16-206ENST00000466415 OSCARQ8IYS5 282 aa19■□□□□ 0.63
VPS16-206ENST00000466415 PCF11O94913 1555 aaKnown RBP18.99■□□□□ 0.63
VPS16-206ENST00000466415 FYCO1Q9BQS8 1478 aa18.97■□□□□ 0.63
VPS16-206ENST00000466415 CASKIN1Q8WXD9 1431 aa18.95■□□□□ 0.62
VPS16-206ENST00000466415 TTBK1Q5TCY1 1321 aaPredicted RBP18.95■□□□□ 0.62
VPS16-206ENST00000466415 ATP1B4Q9UN42 357 aaPredicted RBP18.93■□□□□ 0.62
VPS16-206ENST00000466415 HECW1Q76N89 1606 aa18.91■□□□□ 0.62
VPS16-206ENST00000466415 ERCC6L2Q5T890 1561 aa18.88■□□□□ 0.61
VPS16-206ENST00000466415 RAPGEF6Q8TEU7 1601 aa18.88■□□□□ 0.61
VPS16-206ENST00000466415 PTPRGP23470 1445 aa18.87■□□□□ 0.61
VPS16-206ENST00000466415 CFAP43Q8NDM7 1665 aa18.86■□□□□ 0.61
VPS16-206ENST00000466415 TIAM1Q13009 1591 aa18.85■□□□□ 0.61
VPS16-206ENST00000466415 MAP3K1Q13233 1512 aa18.84■□□□□ 0.61
VPS16-206ENST00000466415 CCDC18Q5T9S5 1454 aa18.84■□□□□ 0.61
VPS16-206ENST00000466415 PPARGC1BQ86YN6 1023 aaKnown RBP18.84■□□□□ 0.61
VPS16-206ENST00000466415 PLB1Q6P1J6 1458 aa18.82■□□□□ 0.6
VPS16-206ENST00000466415 ABCA8O94911 1581 aa18.81■□□□□ 0.6
VPS16-206ENST00000466415 EPRSP07814 1512 aaKnown RBP18.78■□□□□ 0.6
VPS16-206ENST00000466415 NUP153P49790 1475 aaKnown RBP18.77■□□□□ 0.6
VPS16-206ENST00000466415 LRRIQ1Q96JM4 1722 aa18.77■□□□□ 0.59
VPS16-206ENST00000466415 UACAQ9BZF9 1416 aa18.76■□□□□ 0.59
VPS16-206ENST00000466415 LRRC9Q6ZRR7 1453 aa18.75■□□□□ 0.59
VPS16-206ENST00000466415 CDK13Q14004 1512 aaKnown RBP18.74■□□□□ 0.59
VPS16-206ENST00000466415 ARID3CA6NKF2 412 aa18.74■□□□□ 0.59
VPS16-206ENST00000466415 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.73■□□□□ 0.59
VPS16-206ENST00000466415 HNRNPUL2Q1KMD3 747 aaKnown RBP18.73■□□□□ 0.59
VPS16-206ENST00000466415 ABCC2Q92887 1545 aa18.73■□□□□ 0.59
VPS16-206ENST00000466415 MTUS2Q5JR59 1369 aa18.72■□□□□ 0.59
VPS16-206ENST00000466415 KANK4Q5T7N3 995 aaPredicted RBP18.72■□□□□ 0.59
VPS16-206ENST00000466415 EHBP1L1Q8N3D4 1523 aa18.72■□□□□ 0.59
VPS16-206ENST00000466415 ARHGEF11O15085 1522 aa18.71■□□□□ 0.59
VPS16-206ENST00000466415 CDK11AQ9UQ88 783 aaPredicted RBP18.68■□□□□ 0.58
VPS16-206ENST00000466415 UHRF1BP1LA0JNW5 1464 aa18.68■□□□□ 0.58
VPS16-206ENST00000466415 TRIM26Q12899 539 aaPredicted RBP18.67■□□□□ 0.58
VPS16-206ENST00000466415 ATP10BO94823 1461 aa18.65■□□□□ 0.58
VPS16-206ENST00000466415 RIMBP3CA6NJZ7 1639 aa18.64■□□□□ 0.57
VPS16-206ENST00000466415 RIMBP3BA6NNM3 1639 aa18.64■□□□□ 0.57
VPS16-206ENST00000466415 RIMBP3Q9UFD9 1639 aa18.64■□□□□ 0.57
VPS16-206ENST00000466415 SUPT6HQ7KZ85 1726 aaKnown RBP18.63■□□□□ 0.57
VPS16-206ENST00000466415 MAGI3Q5TCQ9 1506 aa18.63■□□□□ 0.57
VPS16-206ENST00000466415 ADCY10Q96PN6 1610 aa18.62■□□□□ 0.57
VPS16-206ENST00000466415 TROQ12816 1431 aaPredicted RBP18.6■□□□□ 0.57
VPS16-206ENST00000466415 ZCCHC11Q5TAX3 1644 aaKnown RBP18.6■□□□□ 0.57
VPS16-206ENST00000466415 KDM5BQ9UGL1 1544 aa18.59■□□□□ 0.57
VPS16-206ENST00000466415 PLEKHD1A6NEE1 506 aa18.58■□□□□ 0.56
VPS16-206ENST00000466415 NCOA2Q15596 1464 aa18.58■□□□□ 0.56
VPS16-206ENST00000466415 PCGF6Q9BYE7 350 aa18.56■□□□□ 0.56
VPS16-206ENST00000466415 KIF14Q15058 1648 aa18.56■□□□□ 0.56
VPS16-206ENST00000466415 PHLDB1Q86UU1 1377 aa18.54■□□□□ 0.56
VPS16-206ENST00000466415 NPM1P06748 294 aaKnown RBP eCLIP18.53■□□□□ 0.56
VPS16-206ENST00000466415 CYB5RLQ6IPT4 315 aa18.5■□□□□ 0.55
VPS16-206ENST00000466415 MYOM3Q5VTT5 1437 aa18.49■□□□□ 0.55
VPS16-206ENST00000466415 RRBP1Q9P2E9 1410 aaKnown RBP18.49■□□□□ 0.55
VPS16-206ENST00000466415 CCNB3Q8WWL7 1395 aa18.48■□□□□ 0.55
VPS16-206ENST00000466415 ITSN2Q9NZM3 1697 aa18.46■□□□□ 0.55
VPS16-206ENST00000466415 FGD6Q6ZV73 1430 aa18.46■□□□□ 0.55
VPS16-206ENST00000466415 WDR7Q9Y4E6 1490 aa18.46■□□□□ 0.54
VPS16-206ENST00000466415 ASXL2Q76L83 1435 aa18.42■□□□□ 0.54
VPS16-206ENST00000466415 MIA2Q96PC5 1412 aa18.41■□□□□ 0.54
VPS16-206ENST00000466415 ABCC10Q5T3U5 1492 aa18.41■□□□□ 0.54
VPS16-206ENST00000466415 FAM50AQ14320 339 aaKnown RBP18.41■□□□□ 0.54
VPS16-206ENST00000466415 KCNH8Q96L42 1107 aa18.41■□□□□ 0.54
VPS16-206ENST00000466415 PTPN23Q9H3S7 1636 aa18.4■□□□□ 0.54
VPS16-206ENST00000466415 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.39■□□□□ 0.53
VPS16-206ENST00000466415 TTC37Q6PGP7 1564 aa18.38■□□□□ 0.53
VPS16-206ENST00000466415 GPATCH8Q9UKJ3 1502 aaKnown RBP18.38■□□□□ 0.53
VPS16-206ENST00000466415 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.37■□□□□ 0.53
VPS16-206ENST00000466415 MAPKBP1O60336 1514 aa18.37■□□□□ 0.53
VPS16-206ENST00000466415 CDC42BPAQ5VT25 1732 aa18.36■□□□□ 0.53
VPS16-206ENST00000466415 CFDP1Q9UEE9 299 aaPredicted RBP18.36■□□□□ 0.53
VPS16-206ENST00000466415 PREX2Q70Z35 1606 aa18.35■□□□□ 0.53
VPS16-206ENST00000466415 TCOF1Q13428 1488 aaKnown RBP18.35■□□□□ 0.53
VPS16-206ENST00000466415 MYO5CQ9NQX4 1742 aa18.35■□□□□ 0.53
VPS16-206ENST00000466415 ITGAEP38570 1179 aa18.33■□□□□ 0.52
VPS16-206ENST00000466415 ARHGAP5Q13017 1502 aa18.32■□□□□ 0.52
VPS16-206ENST00000466415 CAMSAP2Q08AD1 1489 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms