RNA–Protein interactions for RNA: ENST00000465039.5

LIMD1-203, Transcript of LIM domains containing 1, humanhuman

TSL 5

Gene LIMD1, Length 676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-203ENST00000465039 RIMBP3BA6NNM3 1639 aa22.93■■□□□ 1.26
LIMD1-203ENST00000465039 RIMBP3Q9UFD9 1639 aa22.93■■□□□ 1.26
LIMD1-203ENST00000465039 CSRNP3Q8WYN3 585 aa22.88■■□□□ 1.25
LIMD1-203ENST00000465039 IQGAP2Q13576 1575 aa22.82■■□□□ 1.24
LIMD1-203ENST00000465039 KIF21BO75037 1637 aa22.81■■□□□ 1.24
LIMD1-203ENST00000465039 CTTNBP2Q8WZ74 1663 aa22.78■■□□□ 1.24
LIMD1-203ENST00000465039 JPH4Q96JJ6 628 aa22.77■■□□□ 1.24
LIMD1-203ENST00000465039 ARAP1Q96P48 1450 aa22.77■■□□□ 1.24
LIMD1-203ENST00000465039 PRG4Q92954 1404 aaPredicted RBP22.74■■□□□ 1.23
LIMD1-203ENST00000465039 UGGT2Q9NYU1 1516 aa22.72■■□□□ 1.23
LIMD1-203ENST00000465039 ERCC6L2Q5T890 1561 aa22.69■■□□□ 1.22
LIMD1-203ENST00000465039 CARMIL2Q6F5E8 1435 aa22.68■■□□□ 1.22
LIMD1-203ENST00000465039 GOLGA3Q08378 1498 aa22.64■■□□□ 1.21
LIMD1-203ENST00000465039 FAM9AQ8IZU1 332 aaPredicted RBP22.63■■□□□ 1.21
LIMD1-203ENST00000465039 DISP1Q96F81 1524 aa22.61■■□□□ 1.21
LIMD1-203ENST00000465039 CYB5RLQ6IPT4 315 aa22.6■■□□□ 1.21
LIMD1-203ENST00000465039 KIAA0556O60303 1618 aa22.59■■□□□ 1.21
LIMD1-203ENST00000465039 TNIKQ9UKE5 1360 aa22.57■■□□□ 1.2
LIMD1-203ENST00000465039 SAMD9Q5K651 1589 aa22.52■■□□□ 1.2
LIMD1-203ENST00000465039 PTPRGP23470 1445 aa22.51■■□□□ 1.19
LIMD1-203ENST00000465039 EFCAB5A4FU69 1503 aa22.5■■□□□ 1.19
LIMD1-203ENST00000465039 UHRF1BP1LA0JNW5 1464 aa22.44■■□□□ 1.18
LIMD1-203ENST00000465039 UBTFP17480 764 aaKnown RBP22.41■■□□□ 1.18
LIMD1-203ENST00000465039 ADCY10Q96PN6 1610 aa22.41■■□□□ 1.18
LIMD1-203ENST00000465039 ABCC2Q92887 1545 aa22.39■■□□□ 1.17
LIMD1-203ENST00000465039 UACAQ9BZF9 1416 aa22.39■■□□□ 1.17
LIMD1-203ENST00000465039 MAPKBP1O60336 1514 aa22.35■■□□□ 1.17
LIMD1-203ENST00000465039 ABCA8O94911 1581 aa22.33■■□□□ 1.17
LIMD1-203ENST00000465039 KDM5BQ9UGL1 1544 aa22.31■■□□□ 1.16
LIMD1-203ENST00000465039 NPM1P06748 294 aaKnown RBP eCLIP22.29■■□□□ 1.16
LIMD1-203ENST00000465039 PLB1Q6P1J6 1458 aa22.28■■□□□ 1.16
LIMD1-203ENST00000465039 ARHGAP35Q9NRY4 1499 aa22.28■■□□□ 1.16
LIMD1-203ENST00000465039 FHOD3Q2V2M9 1422 aa22.25■■□□□ 1.15
LIMD1-203ENST00000465039 FMN1Q68DA7 1419 aa22.24■■□□□ 1.15
LIMD1-203ENST00000465039 RAPGEF6Q8TEU7 1601 aa22.23■■□□□ 1.15
LIMD1-203ENST00000465039 CLIP1P30622 1438 aa22.2■■□□□ 1.14
LIMD1-203ENST00000465039 ZCCHC11Q5TAX3 1644 aaKnown RBP22.2■■□□□ 1.14
LIMD1-203ENST00000465039 P3H3Q8IVL6 736 aa22.19■■□□□ 1.14
LIMD1-203ENST00000465039 EHMT2Q96KQ7 1210 aa22.19■■□□□ 1.14
LIMD1-203ENST00000465039 TTBK1Q5TCY1 1321 aaPredicted RBP22.19■■□□□ 1.14
LIMD1-203ENST00000465039 ABCC10Q5T3U5 1492 aa22.15■■□□□ 1.14
LIMD1-203ENST00000465039 RANGAP1P46060 587 aaPredicted RBP22.15■■□□□ 1.14
LIMD1-203ENST00000465039 NUP153P49790 1475 aaKnown RBP22.14■■□□□ 1.13
LIMD1-203ENST00000465039 ASXL2Q76L83 1435 aa22.14■■□□□ 1.13
LIMD1-203ENST00000465039 CEP162Q5TB80 1403 aa22.13■■□□□ 1.13
LIMD1-203ENST00000465039 DIP2BQ9P265 1576 aa22.12■■□□□ 1.13
LIMD1-203ENST00000465039 HECW1Q76N89 1606 aa22.12■■□□□ 1.13
LIMD1-203ENST00000465039 WDR7Q9Y4E6 1490 aa22.1■■□□□ 1.13
LIMD1-203ENST00000465039 ATP10BO94823 1461 aa22.09■■□□□ 1.13
LIMD1-203ENST00000465039 GLI2P10070 1586 aa22.09■■□□□ 1.13
LIMD1-203ENST00000465039 KIF13AQ9H1H9 1805 aa22.09■■□□□ 1.13
LIMD1-203ENST00000465039 TRHP20396 242 aaPredicted RBP22.07■■□□□ 1.12
LIMD1-203ENST00000465039 CASKIN1Q8WXD9 1431 aa22.06■■□□□ 1.12
LIMD1-203ENST00000465039 FYCO1Q9BQS8 1478 aa22.05■■□□□ 1.12
LIMD1-203ENST00000465039 EPRSP07814 1512 aaKnown RBP22.03■■□□□ 1.12
LIMD1-203ENST00000465039 PCF11O94913 1555 aaKnown RBP22.01■■□□□ 1.11
LIMD1-203ENST00000465039 CCDC18Q5T9S5 1454 aa22.01■■□□□ 1.11
LIMD1-203ENST00000465039 LOC105371045A0A1W2PR82 267 aa21.99■■□□□ 1.11
LIMD1-203ENST00000465039 FAM69CQ0P6D2 419 aa21.97■■□□□ 1.11
LIMD1-203ENST00000465039 MAP3K4Q9Y6R4 1608 aa21.95■■□□□ 1.1
LIMD1-203ENST00000465039 CFAP43Q8NDM7 1665 aa21.94■■□□□ 1.1
LIMD1-203ENST00000465039 CDK13Q14004 1512 aaKnown RBP21.92■■□□□ 1.1
LIMD1-203ENST00000465039 CDK11AQ9UQ88 783 aaPredicted RBP21.92■■□□□ 1.1
LIMD1-203ENST00000465039 ABCA9Q8IUA7 1624 aa21.91■■□□□ 1.1
LIMD1-203ENST00000465039 PLEKHD1A6NEE1 506 aa21.9■■□□□ 1.1
LIMD1-203ENST00000465039 VPS8Q8N3P4 1428 aa21.89■■□□□ 1.1
LIMD1-203ENST00000465039 LRRIQ1Q96JM4 1722 aa21.89■■□□□ 1.1
LIMD1-203ENST00000465039 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.88■■□□□ 1.09
LIMD1-203ENST00000465039 HNRNPUL2Q1KMD3 747 aaKnown RBP21.88■■□□□ 1.09
LIMD1-203ENST00000465039 TEX14Q8IWB6 1497 aa21.88■■□□□ 1.09
LIMD1-203ENST00000465039 MAGI3Q5TCQ9 1506 aa21.87■■□□□ 1.09
LIMD1-203ENST00000465039 ARID3CA6NKF2 412 aa21.86■■□□□ 1.09
LIMD1-203ENST00000465039 TROQ12816 1431 aaPredicted RBP21.85■■□□□ 1.09
LIMD1-203ENST00000465039 PPRC1Q5VV67 1664 aaKnown RBP21.84■■□□□ 1.09
LIMD1-203ENST00000465039 CD109Q6YHK3 1445 aa21.82■■□□□ 1.08
LIMD1-203ENST00000465039 ATP1B4Q9UN42 357 aaPredicted RBP21.82■■□□□ 1.08
LIMD1-203ENST00000465039 KIF14Q15058 1648 aa21.81■■□□□ 1.08
LIMD1-203ENST00000465039 KCNH8Q96L42 1107 aa21.79■■□□□ 1.08
LIMD1-203ENST00000465039 MAP3K1Q13233 1512 aa21.79■■□□□ 1.08
LIMD1-203ENST00000465039 TSPOAP1O95153 1857 aa21.79■■□□□ 1.08
LIMD1-203ENST00000465039 PHLDB1Q86UU1 1377 aa21.78■■□□□ 1.08
LIMD1-203ENST00000465039 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.78■■□□□ 1.08
LIMD1-203ENST00000465039 ARAP3Q8WWN8 1544 aa21.78■■□□□ 1.08
LIMD1-203ENST00000465039 TTC37Q6PGP7 1564 aa21.74■■□□□ 1.07
LIMD1-203ENST00000465039 NEO1Q92859 1461 aa21.74■■□□□ 1.07
LIMD1-203ENST00000465039 EHBP1L1Q8N3D4 1523 aa21.74■■□□□ 1.07
LIMD1-203ENST00000465039 CFAP74Q9C0B2 1584 aa21.74■■□□□ 1.07
LIMD1-203ENST00000465039 TIAM1Q13009 1591 aa21.73■■□□□ 1.07
LIMD1-203ENST00000465039 KDM6BO15054 1643 aa21.71■■□□□ 1.07
LIMD1-203ENST00000465039 MYO5CQ9NQX4 1742 aa21.7■■□□□ 1.06
LIMD1-203ENST00000465039 MTUS2Q5JR59 1369 aa21.69■■□□□ 1.06
LIMD1-203ENST00000465039 PLCH2O75038 1416 aa21.68■■□□□ 1.06
LIMD1-203ENST00000465039 FANCAO15360 1455 aa21.64■■□□□ 1.06
LIMD1-203ENST00000465039 PREX2Q70Z35 1606 aa21.63■■□□□ 1.05
LIMD1-203ENST00000465039 LRRC9Q6ZRR7 1453 aa21.62■■□□□ 1.05
LIMD1-203ENST00000465039 SUPT6HQ7KZ85 1726 aaKnown RBP21.6■■□□□ 1.05
LIMD1-203ENST00000465039 CDC42BPAQ5VT25 1732 aa21.58■■□□□ 1.04
LIMD1-203ENST00000465039 COL17A1Q9UMD9 1497 aaPredicted RBP21.57■■□□□ 1.04
LIMD1-203ENST00000465039 ITSN2Q9NZM3 1697 aa21.56■■□□□ 1.04
LIMD1-203ENST00000465039 AKNAQ7Z591 1439 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 265.3 ms