RNA–Protein interactions for RNA: ENST00000465039.5

LIMD1-203, Transcript of LIM domains containing 1, humanhuman

TSL 5

Gene LIMD1, Length 676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-203ENST00000465039 NISCHQ9Y2I1 1504 aa33.17■■■□□ 2.9
LIMD1-203ENST00000465039 CCDC180Q9P1Z9 1646 aa29.54■■■□□ 2.32
LIMD1-203ENST00000465039 ABCC9O60706 1549 aa28.49■■■□□ 2.15
LIMD1-203ENST00000465039 NACADO15069 1562 aa27.71■■■□□ 2.03
LIMD1-203ENST00000465039 MYO15BQ96JP2 1530 aa27.71■■■□□ 2.03
LIMD1-203ENST00000465039 ZCCHC6Q5VYS8 1495 aaKnown RBP27.7■■■□□ 2.02
LIMD1-203ENST00000465039 RB1CC1Q8TDY2 1594 aa27.66■■■□□ 2.02
LIMD1-203ENST00000465039 DCAF1Q9Y4B6 1507 aa27.6■■■□□ 2.01
LIMD1-203ENST00000465039 DCAF8L2P0C7V8 631 aa27.34■■□□□ 1.97
LIMD1-203ENST00000465039 UNC13AQ9UPW8 1703 aa26.95■■□□□ 1.9
LIMD1-203ENST00000465039 SCRIBQ14160 1630 aa26.76■■□□□ 1.87
LIMD1-203ENST00000465039 BICRAQ9NZM4 1560 aa26.75■■□□□ 1.87
LIMD1-203ENST00000465039 SHROOM4Q9ULL8 1493 aa26.74■■□□□ 1.87
LIMD1-203ENST00000465039 PABPN1Q86U42 306 aaKnown RBP eCLIP26.55■■□□□ 1.84
LIMD1-203ENST00000465039 EIF4G1Q04637 1599 aaKnown RBP26.05■■□□□ 1.76
LIMD1-203ENST00000465039 DNAJC5BQ9UF47 199 aa25.91■■□□□ 1.74
LIMD1-203ENST00000465039 CC2D2AQ9P2K1 1620 aa25.87■■□□□ 1.73
LIMD1-203ENST00000465039 BAZ1AQ9NRL2 1556 aaPredicted RBP25.75■■□□□ 1.71
LIMD1-203ENST00000465039 SMARCA4P51532 1647 aa25.7■■□□□ 1.71
LIMD1-203ENST00000465039 CECR2Q9BXF3 1484 aa25.7■■□□□ 1.7
LIMD1-203ENST00000465039 SMARCA2P51531 1590 aa25.56■■□□□ 1.68
LIMD1-203ENST00000465039 PEG3Q9GZU2 1588 aa25.56■■□□□ 1.68
LIMD1-203ENST00000465039 NCAPD3P42695 1498 aa25.53■■□□□ 1.68
LIMD1-203ENST00000465039 ATAD2BQ9ULI0 1458 aa25.51■■□□□ 1.67
LIMD1-203ENST00000465039 MROH2BQ7Z745 1585 aa25.48■■□□□ 1.67
LIMD1-203ENST00000465039 HMGXB3Q12766 1538 aa25.47■■□□□ 1.67
LIMD1-203ENST00000465039 BAZ1BQ9UIG0 1483 aaKnown RBP25.31■■□□□ 1.64
LIMD1-203ENST00000465039 RSF1Q96T23 1441 aaPredicted RBP25.28■■□□□ 1.64
LIMD1-203ENST00000465039 WIZO95785 1651 aa25.19■■□□□ 1.62
LIMD1-203ENST00000465039 TOP2AP11388 1531 aaKnown RBP25.06■■□□□ 1.6
LIMD1-203ENST00000465039 LAMC3Q9Y6N6 1575 aa24.85■■□□□ 1.57
LIMD1-203ENST00000465039 CADPSQ9ULU8 1353 aa24.74■■□□□ 1.55
LIMD1-203ENST00000465039 NESP48681 1621 aa24.68■■□□□ 1.54
LIMD1-203ENST00000465039 CCDC88BA6NC98 1476 aa24.67■■□□□ 1.54
LIMD1-203ENST00000465039 CFTRP13569 1480 aa24.66■■□□□ 1.54
LIMD1-203ENST00000465039 PDS5BQ9NTI5 1447 aa24.64■■□□□ 1.54
LIMD1-203ENST00000465039 ERCC6Q03468 1493 aa24.61■■□□□ 1.53
LIMD1-203ENST00000465039 SUPT5HO00267 1087 aaKnown RBP24.54■■□□□ 1.52
LIMD1-203ENST00000465039 PRDM2Q13029 1718 aa24.54■■□□□ 1.52
LIMD1-203ENST00000465039 KIF21AQ7Z4S6 1674 aa24.47■■□□□ 1.51
LIMD1-203ENST00000465039 FANCD2Q9BXW9 1451 aa24.44■■□□□ 1.5
LIMD1-203ENST00000465039 CEP164Q9UPV0 1460 aa24.43■■□□□ 1.5
LIMD1-203ENST00000465039 THOC2Q8NI27 1593 aaKnown RBP24.42■■□□□ 1.5
LIMD1-203ENST00000465039 CUX2O14529 1486 aa24.42■■□□□ 1.5
LIMD1-203ENST00000465039 MRC2Q9UBG0 1479 aa24.37■■□□□ 1.49
LIMD1-203ENST00000465039 WDR62O43379 1518 aa24.31■■□□□ 1.48
LIMD1-203ENST00000465039 ABCC8Q09428 1581 aa24.2■■□□□ 1.46
LIMD1-203ENST00000465039 URB2Q14146 1524 aaKnown RBP24.16■■□□□ 1.46
LIMD1-203ENST00000465039 DNMBPQ6XZF7 1577 aa24.11■■□□□ 1.45
LIMD1-203ENST00000465039 TOPBP1Q92547 1522 aa24.07■■□□□ 1.44
LIMD1-203ENST00000465039 IFT140Q96RY7 1462 aa23.94■■□□□ 1.42
LIMD1-203ENST00000465039 CUX1P39880 1505 aa23.92■■□□□ 1.42
LIMD1-203ENST00000465039 POLA1P09884 1462 aaPredicted RBP23.87■■□□□ 1.41
LIMD1-203ENST00000465039 WRNQ14191 1432 aaPredicted RBP eCLIP23.85■■□□□ 1.41
LIMD1-203ENST00000465039 BIVM-ERCC5R4GMW8 1640 aa23.84■■□□□ 1.41
LIMD1-203ENST00000465039 TOP2BQ02880 1626 aa23.83■■□□□ 1.41
LIMD1-203ENST00000465039 FGD5Q6ZNL6 1462 aa23.82■■□□□ 1.4
LIMD1-203ENST00000465039 TARBP1Q13395 1621 aaKnown RBP23.82■■□□□ 1.4
LIMD1-203ENST00000465039 WDR97A6NE52 1622 aa23.81■■□□□ 1.4
LIMD1-203ENST00000465039 SYNJ1O43426 1573 aa23.75■■□□□ 1.39
LIMD1-203ENST00000465039 SOGA1O94964 1423 aa23.75■■□□□ 1.39
LIMD1-203ENST00000465039 EIF4G3O43432 1585 aaKnown RBP23.69■■□□□ 1.38
LIMD1-203ENST00000465039 ZNF608Q9ULD9 1512 aaPredicted RBP23.68■■□□□ 1.38
LIMD1-203ENST00000465039 ABCA10Q8WWZ4 1543 aa23.67■■□□□ 1.38
LIMD1-203ENST00000465039 RAD54L2Q9Y4B4 1467 aa23.67■■□□□ 1.38
LIMD1-203ENST00000465039 ABCA5Q8WWZ7 1642 aa23.56■■□□□ 1.36
LIMD1-203ENST00000465039 AQRO60306 1485 aaKnown RBP eCLIP23.55■■□□□ 1.362e-6■■■□□ 15.2
LIMD1-203ENST00000465039 TDRD9Q8NDG6 1382 aaKnown RBP23.52■■□□□ 1.36
LIMD1-203ENST00000465039 GRIN2BQ13224 1484 aa23.52■■□□□ 1.36
LIMD1-203ENST00000465039 GAPVD1Q14C86 1478 aa23.5■■□□□ 1.35
LIMD1-203ENST00000465039 MAGI1Q96QZ7 1491 aaPredicted RBP23.49■■□□□ 1.35
LIMD1-203ENST00000465039 PBRM1Q86U86 1689 aa23.45■■□□□ 1.34
LIMD1-203ENST00000465039 ERICH3Q5RHP9 1530 aa23.42■■□□□ 1.34
LIMD1-203ENST00000465039 SNAPC4Q5SXM2 1469 aa23.4■■□□□ 1.34
LIMD1-203ENST00000465039 KIF27Q86VH2 1401 aa23.37■■□□□ 1.33
LIMD1-203ENST00000465039 SYNJ2O15056 1496 aa23.36■■□□□ 1.33
LIMD1-203ENST00000465039 DNAJC5Q9H3Z4 198 aa23.35■■□□□ 1.33
LIMD1-203ENST00000465039 ADAMTS12P58397 1594 aa23.31■■□□□ 1.32
LIMD1-203ENST00000465039 CHD1O14646 1710 aa23.31■■□□□ 1.32
LIMD1-203ENST00000465039 OSCARQ8IYS5 282 aa23.31■■□□□ 1.32
LIMD1-203ENST00000465039 TRIM41Q8WV44 630 aa23.29■■□□□ 1.32
LIMD1-203ENST00000465039 FHAD1B1AJZ9 1412 aa23.28■■□□□ 1.32
LIMD1-203ENST00000465039 CUL7Q14999 1698 aa23.25■■□□□ 1.31
LIMD1-203ENST00000465039 CHMP7Q8WUX9 453 aaPredicted RBP23.22■■□□□ 1.31
LIMD1-203ENST00000465039 GRIN2AQ12879 1464 aa23.21■■□□□ 1.31
LIMD1-203ENST00000465039 IGF1RP08069 1367 aa23.19■■□□□ 1.3
LIMD1-203ENST00000465039 FBLN2P98095 1184 aa23.15■■□□□ 1.3
LIMD1-203ENST00000465039 CLASP1Q7Z460 1538 aa23.14■■□□□ 1.3
LIMD1-203ENST00000465039 NUP160Q12769 1436 aa23.13■■□□□ 1.29
LIMD1-203ENST00000465039 EEA1Q15075 1411 aa23.11■■□□□ 1.29
LIMD1-203ENST00000465039 CHIC1Q5VXU3 224 aa23.08■■□□□ 1.29
LIMD1-203ENST00000465039 CARMIL1Q5VZK9 1371 aa23.05■■□□□ 1.28
LIMD1-203ENST00000465039 CEP170Q5SW79 1584 aa23.05■■□□□ 1.28
LIMD1-203ENST00000465039 RUSC2Q8N2Y8 1516 aa23.03■■□□□ 1.28
LIMD1-203ENST00000465039 RAPGEF2Q9Y4G8 1499 aa22.98■■□□□ 1.27
LIMD1-203ENST00000465039 PRXQ9BXM0 1461 aa22.97■■□□□ 1.27
LIMD1-203ENST00000465039 ARHGEF11O15085 1522 aa22.97■■□□□ 1.27
LIMD1-203ENST00000465039 SHROOM2Q13796 1616 aa22.96■■□□□ 1.27
LIMD1-203ENST00000465039 KIAA0586Q9BVV6 1533 aa22.93■■□□□ 1.26
LIMD1-203ENST00000465039 RIMBP3CA6NJZ7 1639 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms