RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 FAM9AQ8IZU1 332 aaPredicted RBP24.18■■□□□ 1.46
SQSTM1-205ENST00000464493 PRXQ9BXM0 1461 aa24.18■■□□□ 1.46
SQSTM1-205ENST00000464493 KIAA0586Q9BVV6 1533 aa24.17■■□□□ 1.46
SQSTM1-205ENST00000464493 JPH4Q96JJ6 628 aa24.17■■□□□ 1.46
SQSTM1-205ENST00000464493 SHROOM2Q13796 1616 aa24.14■■□□□ 1.46
SQSTM1-205ENST00000464493 CYB5RLQ6IPT4 315 aa24.12■■□□□ 1.45
SQSTM1-205ENST00000464493 ARAP1Q96P48 1450 aa24.09■■□□□ 1.45
SQSTM1-205ENST00000464493 PRG4Q92954 1404 aaPredicted RBP24.08■■□□□ 1.44
SQSTM1-205ENST00000464493 ERCC6L2Q5T890 1561 aa24.08■■□□□ 1.44
SQSTM1-205ENST00000464493 IQGAP2Q13576 1575 aa24.03■■□□□ 1.44
SQSTM1-205ENST00000464493 CTTNBP2Q8WZ74 1663 aa23.98■■□□□ 1.43
SQSTM1-205ENST00000464493 KIF21BO75037 1637 aa23.95■■□□□ 1.42
SQSTM1-205ENST00000464493 CARMIL2Q6F5E8 1435 aa23.93■■□□□ 1.42
SQSTM1-205ENST00000464493 UGGT2Q9NYU1 1516 aa23.91■■□□□ 1.42
SQSTM1-205ENST00000464493 EHMT2Q96KQ7 1210 aa23.87■■□□□ 1.41
SQSTM1-205ENST00000464493 DISP1Q96F81 1524 aa23.87■■□□□ 1.41
SQSTM1-205ENST00000464493 GOLGA3Q08378 1498 aa23.83■■□□□ 1.41
SQSTM1-205ENST00000464493 TNIKQ9UKE5 1360 aa23.83■■□□□ 1.41
SQSTM1-205ENST00000464493 UBTFP17480 764 aaKnown RBP23.83■■□□□ 1.41
SQSTM1-205ENST00000464493 PTPRGP23470 1445 aa23.82■■□□□ 1.4
SQSTM1-205ENST00000464493 TTBK1Q5TCY1 1321 aaPredicted RBP23.81■■□□□ 1.4
SQSTM1-205ENST00000464493 KIAA0556O60303 1618 aa23.8■■□□□ 1.4
SQSTM1-205ENST00000464493 RANGAP1P46060 587 aaPredicted RBP23.74■■□□□ 1.39
SQSTM1-205ENST00000464493 P3H3Q8IVL6 736 aa23.71■■□□□ 1.39
SQSTM1-205ENST00000464493 SAMD9Q5K651 1589 aa23.68■■□□□ 1.38
SQSTM1-205ENST00000464493 ADCY10Q96PN6 1610 aa23.67■■□□□ 1.38
SQSTM1-205ENST00000464493 NPM1P06748 294 aaKnown RBP eCLIP23.67■■□□□ 1.38
SQSTM1-205ENST00000464493 UACAQ9BZF9 1416 aa23.66■■□□□ 1.38
SQSTM1-205ENST00000464493 UHRF1BP1LA0JNW5 1464 aa23.61■■□□□ 1.37
SQSTM1-205ENST00000464493 EFCAB5A4FU69 1503 aa23.6■■□□□ 1.37
SQSTM1-205ENST00000464493 TRHP20396 242 aaPredicted RBP23.59■■□□□ 1.37
SQSTM1-205ENST00000464493 ABCC2Q92887 1545 aa23.59■■□□□ 1.37
SQSTM1-205ENST00000464493 PLB1Q6P1J6 1458 aa23.57■■□□□ 1.36
SQSTM1-205ENST00000464493 FHOD3Q2V2M9 1422 aa23.57■■□□□ 1.36
SQSTM1-205ENST00000464493 ABCA8O94911 1581 aa23.54■■□□□ 1.36
SQSTM1-205ENST00000464493 ARHGAP35Q9NRY4 1499 aa23.51■■□□□ 1.35
SQSTM1-205ENST00000464493 MAPKBP1O60336 1514 aa23.5■■□□□ 1.35
SQSTM1-205ENST00000464493 KDM5BQ9UGL1 1544 aa23.49■■□□□ 1.35
SQSTM1-205ENST00000464493 LOC105371045A0A1W2PR82 267 aa23.49■■□□□ 1.35
SQSTM1-205ENST00000464493 ZCCHC11Q5TAX3 1644 aaKnown RBP23.44■■□□□ 1.34
SQSTM1-205ENST00000464493 RAPGEF6Q8TEU7 1601 aa23.44■■□□□ 1.34
SQSTM1-205ENST00000464493 CLIP1P30622 1438 aa23.42■■□□□ 1.34
SQSTM1-205ENST00000464493 ASXL2Q76L83 1435 aa23.42■■□□□ 1.34
SQSTM1-205ENST00000464493 FMN1Q68DA7 1419 aa23.41■■□□□ 1.34
SQSTM1-205ENST00000464493 ABCC10Q5T3U5 1492 aa23.4■■□□□ 1.34
SQSTM1-205ENST00000464493 ARID3CA6NKF2 412 aa23.39■■□□□ 1.33
SQSTM1-205ENST00000464493 FAM69CQ0P6D2 419 aa23.39■■□□□ 1.33
SQSTM1-205ENST00000464493 ATP10BO94823 1461 aa23.37■■□□□ 1.33
SQSTM1-205ENST00000464493 KIF13AQ9H1H9 1805 aa23.36■■□□□ 1.33
SQSTM1-205ENST00000464493 NUP153P49790 1475 aaKnown RBP23.36■■□□□ 1.33
SQSTM1-205ENST00000464493 DIP2BQ9P265 1576 aa23.34■■□□□ 1.33
SQSTM1-205ENST00000464493 CEP162Q5TB80 1403 aa23.33■■□□□ 1.33
SQSTM1-205ENST00000464493 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.33■■□□□ 1.33
SQSTM1-205ENST00000464493 HNRNPUL2Q1KMD3 747 aaKnown RBP23.33■■□□□ 1.33
SQSTM1-205ENST00000464493 ATP1B4Q9UN42 357 aaPredicted RBP23.32■■□□□ 1.32
SQSTM1-205ENST00000464493 WDR7Q9Y4E6 1490 aa23.3■■□□□ 1.32
SQSTM1-205ENST00000464493 EPRSP07814 1512 aaKnown RBP23.28■■□□□ 1.32
SQSTM1-205ENST00000464493 KCNH8Q96L42 1107 aa23.27■■□□□ 1.32
SQSTM1-205ENST00000464493 HECW1Q76N89 1606 aa23.26■■□□□ 1.31
SQSTM1-205ENST00000464493 GLI2P10070 1586 aa23.25■■□□□ 1.31
SQSTM1-205ENST00000464493 CASKIN1Q8WXD9 1431 aa23.24■■□□□ 1.31
SQSTM1-205ENST00000464493 PLEKHD1A6NEE1 506 aa23.22■■□□□ 1.31
SQSTM1-205ENST00000464493 CDK13Q14004 1512 aaKnown RBP23.2■■□□□ 1.3
SQSTM1-205ENST00000464493 PCF11O94913 1555 aaKnown RBP23.19■■□□□ 1.3
SQSTM1-205ENST00000464493 TSPOAP1O95153 1857 aa23.17■■□□□ 1.3
SQSTM1-205ENST00000464493 FYCO1Q9BQS8 1478 aa23.17■■□□□ 1.3
SQSTM1-205ENST00000464493 CDK11AQ9UQ88 783 aaPredicted RBP23.15■■□□□ 1.3
SQSTM1-205ENST00000464493 LRRIQ1Q96JM4 1722 aa23.14■■□□□ 1.3
SQSTM1-205ENST00000464493 MAP3K4Q9Y6R4 1608 aa23.14■■□□□ 1.29
SQSTM1-205ENST00000464493 CCDC18Q5T9S5 1454 aa23.12■■□□□ 1.29
SQSTM1-205ENST00000464493 CD109Q6YHK3 1445 aa23.11■■□□□ 1.29
SQSTM1-205ENST00000464493 CFAP43Q8NDM7 1665 aa23.09■■□□□ 1.29
SQSTM1-205ENST00000464493 PPRC1Q5VV67 1664 aaKnown RBP23.07■■□□□ 1.28
SQSTM1-205ENST00000464493 ABCA9Q8IUA7 1624 aa23.07■■□□□ 1.28
SQSTM1-205ENST00000464493 VPS8Q8N3P4 1428 aa23.05■■□□□ 1.28
SQSTM1-205ENST00000464493 TEX14Q8IWB6 1497 aa23.05■■□□□ 1.28
SQSTM1-205ENST00000464493 MAGI3Q5TCQ9 1506 aa23.03■■□□□ 1.28
SQSTM1-205ENST00000464493 TROQ12816 1431 aaPredicted RBP23.03■■□□□ 1.28
SQSTM1-205ENST00000464493 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.01■■□□□ 1.276e-7■■■■□ 21.5
SQSTM1-205ENST00000464493 KIF14Q15058 1648 aa22.96■■□□□ 1.27
SQSTM1-205ENST00000464493 KDM6BO15054 1643 aa22.95■■□□□ 1.26
SQSTM1-205ENST00000464493 TTC37Q6PGP7 1564 aa22.95■■□□□ 1.26
SQSTM1-205ENST00000464493 MTUS2Q5JR59 1369 aa22.91■■□□□ 1.26
SQSTM1-205ENST00000464493 PHLDB1Q86UU1 1377 aa22.89■■□□□ 1.26
SQSTM1-205ENST00000464493 COL17A1Q9UMD9 1497 aaPredicted RBP22.89■■□□□ 1.25
SQSTM1-205ENST00000464493 PLCH2O75038 1416 aa22.89■■□□□ 1.25
SQSTM1-205ENST00000464493 NEO1Q92859 1461 aa22.88■■□□□ 1.25
SQSTM1-205ENST00000464493 TIAM1Q13009 1591 aa22.87■■□□□ 1.25
SQSTM1-205ENST00000464493 MYO5CQ9NQX4 1742 aa22.86■■□□□ 1.25
SQSTM1-205ENST00000464493 FANCAO15360 1455 aa22.85■■□□□ 1.25
SQSTM1-205ENST00000464493 MAP3K1Q13233 1512 aa22.84■■□□□ 1.25
SQSTM1-205ENST00000464493 APLP2Q06481 763 aa22.84■■□□□ 1.25
SQSTM1-205ENST00000464493 EHBP1L1Q8N3D4 1523 aa22.83■■□□□ 1.25
SQSTM1-205ENST00000464493 ARAP3Q8WWN8 1544 aa22.83■■□□□ 1.25
SQSTM1-205ENST00000464493 EFCAB2Q5VUJ9 269 aa22.83■■□□□ 1.25
SQSTM1-205ENST00000464493 CFAP74Q9C0B2 1584 aa22.82■■□□□ 1.24
SQSTM1-205ENST00000464493 AKNAQ7Z591 1439 aa22.82■■□□□ 1.24
SQSTM1-205ENST00000464493 ARHGAP5Q13017 1502 aa22.79■■□□□ 1.24
SQSTM1-205ENST00000464493 LRRC9Q6ZRR7 1453 aa22.79■■□□□ 1.24
SQSTM1-205ENST00000464493 KANK4Q5T7N3 995 aaPredicted RBP22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms