RNA–Protein interactions for RNA: ENST00000462276.1

RTF1-202, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-202ENST00000462276 NUP160Q12769 1436 aa17.16■□□□□ 0.34
RTF1-202ENST00000462276 OSCARQ8IYS5 282 aa17.14■□□□□ 0.33
RTF1-202ENST00000462276 KIAA0586Q9BVV6 1533 aa17.14■□□□□ 0.33
RTF1-202ENST00000462276 JPH4Q96JJ6 628 aa17.07■□□□□ 0.32
RTF1-202ENST00000462276 CEP162Q5TB80 1403 aa17.03■□□□□ 0.32
RTF1-202ENST00000462276 CEP170Q5SW79 1584 aa17.02■□□□□ 0.32
RTF1-202ENST00000462276 CLIP1P30622 1438 aa17.02■□□□□ 0.31
RTF1-202ENST00000462276 IQGAP2Q13576 1575 aa17.01■□□□□ 0.31
RTF1-202ENST00000462276 CHD1O14646 1710 aa16.99■□□□□ 0.31
RTF1-202ENST00000462276 UGGT2Q9NYU1 1516 aa16.98■□□□□ 0.31
RTF1-202ENST00000462276 CARMIL2Q6F5E8 1435 aa16.97■□□□□ 0.31
RTF1-202ENST00000462276 RANGAP1P46060 587 aaPredicted RBP16.96■□□□□ 0.31
RTF1-202ENST00000462276 EFCAB5A4FU69 1503 aa16.96■□□□□ 0.3
RTF1-202ENST00000462276 CLASP1Q7Z460 1538 aa16.95■□□□□ 0.3
RTF1-202ENST00000462276 CTTNBP2Q8WZ74 1663 aa16.94■□□□□ 0.3
RTF1-202ENST00000462276 ARHGAP35Q9NRY4 1499 aa16.92■□□□□ 0.3
RTF1-202ENST00000462276 PRG4Q92954 1404 aaPredicted RBP16.91■□□□□ 0.3
RTF1-202ENST00000462276 DISP1Q96F81 1524 aa16.88■□□□□ 0.29
RTF1-202ENST00000462276 P3H3Q8IVL6 736 aa16.87■□□□□ 0.29
RTF1-202ENST00000462276 FMN1Q68DA7 1419 aa16.87■□□□□ 0.29
RTF1-202ENST00000462276 SHROOM2Q13796 1616 aa16.86■□□□□ 0.29
RTF1-202ENST00000462276 SAMD9Q5K651 1589 aa16.85■□□□□ 0.29
RTF1-202ENST00000462276 ARAP1Q96P48 1450 aa16.85■□□□□ 0.29
RTF1-202ENST00000462276 RIMBP3CA6NJZ7 1639 aa16.85■□□□□ 0.29
RTF1-202ENST00000462276 RIMBP3BA6NNM3 1639 aa16.85■□□□□ 0.29
RTF1-202ENST00000462276 RIMBP3Q9UFD9 1639 aa16.85■□□□□ 0.29
RTF1-202ENST00000462276 PTPRGP23470 1445 aa16.83■□□□□ 0.28
RTF1-202ENST00000462276 FHOD3Q2V2M9 1422 aa16.82■□□□□ 0.28
RTF1-202ENST00000462276 VPS8Q8N3P4 1428 aa16.82■□□□□ 0.28
RTF1-202ENST00000462276 KIAA0556O60303 1618 aa16.81■□□□□ 0.28
RTF1-202ENST00000462276 ARHGEF11O15085 1522 aa16.8■□□□□ 0.28
RTF1-202ENST00000462276 APLP2Q06481 763 aa16.75■□□□□ 0.27
RTF1-202ENST00000462276 CASKIN1Q8WXD9 1431 aa16.75■□□□□ 0.27
RTF1-202ENST00000462276 TTBK1Q5TCY1 1321 aaPredicted RBP16.7■□□□□ 0.26
RTF1-202ENST00000462276 UACAQ9BZF9 1416 aa16.7■□□□□ 0.26
RTF1-202ENST00000462276 FYCO1Q9BQS8 1478 aa16.7■□□□□ 0.26
RTF1-202ENST00000462276 ERCC6L2Q5T890 1561 aa16.68■□□□□ 0.26
RTF1-202ENST00000462276 ATP1B4Q9UN42 357 aaPredicted RBP16.68■□□□□ 0.26
RTF1-202ENST00000462276 CYB5RLQ6IPT4 315 aa16.66■□□□□ 0.26
RTF1-202ENST00000462276 CDK11AQ9UQ88 783 aaPredicted RBP16.66■□□□□ 0.26
RTF1-202ENST00000462276 UHRF1BP1LA0JNW5 1464 aa16.66■□□□□ 0.26
RTF1-202ENST00000462276 PLB1Q6P1J6 1458 aa16.65■□□□□ 0.26
RTF1-202ENST00000462276 MAP3K1Q13233 1512 aa16.65■□□□□ 0.26
RTF1-202ENST00000462276 ABCA8O94911 1581 aa16.64■□□□□ 0.25
RTF1-202ENST00000462276 CCDC18Q5T9S5 1454 aa16.62■□□□□ 0.25
RTF1-202ENST00000462276 NPM1P06748 294 aaKnown RBP eCLIP16.61■□□□□ 0.25
RTF1-202ENST00000462276 NUP153P49790 1475 aaKnown RBP16.6■□□□□ 0.25
RTF1-202ENST00000462276 ABCC2Q92887 1545 aa16.6■□□□□ 0.25
RTF1-202ENST00000462276 RAPGEF6Q8TEU7 1601 aa16.59■□□□□ 0.25
RTF1-202ENST00000462276 HECW1Q76N89 1606 aa16.59■□□□□ 0.25
RTF1-202ENST00000462276 EPRSP07814 1512 aaKnown RBP16.58■□□□□ 0.24
RTF1-202ENST00000462276 PCF11O94913 1555 aaKnown RBP16.58■□□□□ 0.24
RTF1-202ENST00000462276 PLEKHD1A6NEE1 506 aa16.57■□□□□ 0.24
RTF1-202ENST00000462276 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.57■□□□□ 0.24
RTF1-202ENST00000462276 HNRNPUL2Q1KMD3 747 aaKnown RBP16.57■□□□□ 0.24
RTF1-202ENST00000462276 ATP10BO94823 1461 aa16.56■□□□□ 0.24
RTF1-202ENST00000462276 KDM5BQ9UGL1 1544 aa16.55■□□□□ 0.24
RTF1-202ENST00000462276 MTUS2Q5JR59 1369 aa16.52■□□□□ 0.24
RTF1-202ENST00000462276 ARID3CA6NKF2 412 aa16.51■□□□□ 0.23
RTF1-202ENST00000462276 TIAM1Q13009 1591 aa16.51■□□□□ 0.23
RTF1-202ENST00000462276 KANK4Q5T7N3 995 aaPredicted RBP16.5■□□□□ 0.23
RTF1-202ENST00000462276 LRRC9Q6ZRR7 1453 aa16.49■□□□□ 0.23
RTF1-202ENST00000462276 TROQ12816 1431 aaPredicted RBP16.47■□□□□ 0.23
RTF1-202ENST00000462276 CDK13Q14004 1512 aaKnown RBP16.47■□□□□ 0.23
RTF1-202ENST00000462276 TRHP20396 242 aaPredicted RBP16.47■□□□□ 0.23
RTF1-202ENST00000462276 ADCY10Q96PN6 1610 aa16.47■□□□□ 0.23
RTF1-202ENST00000462276 EHBP1L1Q8N3D4 1523 aa16.42■□□□□ 0.22
RTF1-202ENST00000462276 CFAP43Q8NDM7 1665 aa16.41■□□□□ 0.22
RTF1-202ENST00000462276 ASXL2Q76L83 1435 aa16.4■□□□□ 0.22
RTF1-202ENST00000462276 PPARGC1BQ86YN6 1023 aaKnown RBP16.4■□□□□ 0.22
RTF1-202ENST00000462276 WDR7Q9Y4E6 1490 aa16.4■□□□□ 0.22
RTF1-202ENST00000462276 ZCCHC11Q5TAX3 1644 aaKnown RBP16.37■□□□□ 0.21
RTF1-202ENST00000462276 MAPKBP1O60336 1514 aa16.37■□□□□ 0.21
RTF1-202ENST00000462276 KCNH8Q96L42 1107 aa16.37■□□□□ 0.21
RTF1-202ENST00000462276 MAGI3Q5TCQ9 1506 aa16.36■□□□□ 0.21
RTF1-202ENST00000462276 NCOA2Q15596 1464 aa16.35■□□□□ 0.21
RTF1-202ENST00000462276 CCNB3Q8WWL7 1395 aa16.35■□□□□ 0.21
RTF1-202ENST00000462276 LRRIQ1Q96JM4 1722 aa16.33■□□□□ 0.21
RTF1-202ENST00000462276 MIA2Q96PC5 1412 aa16.31■□□□□ 0.2
RTF1-202ENST00000462276 TRIM26Q12899 539 aaPredicted RBP16.31■□□□□ 0.2
RTF1-202ENST00000462276 SUPT6HQ7KZ85 1726 aaKnown RBP16.31■□□□□ 0.2
RTF1-202ENST00000462276 MYOM3Q5VTT5 1437 aa16.3■□□□□ 0.2
RTF1-202ENST00000462276 PHLDB1Q86UU1 1377 aa16.3■□□□□ 0.2
RTF1-202ENST00000462276 CFDP1Q9UEE9 299 aaPredicted RBP16.3■□□□□ 0.2
RTF1-202ENST00000462276 KIF14Q15058 1648 aa16.3■□□□□ 0.2
RTF1-202ENST00000462276 ABCC10Q5T3U5 1492 aa16.29■□□□□ 0.2
RTF1-202ENST00000462276 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.28■□□□□ 0.2
RTF1-202ENST00000462276 EFCAB2Q5VUJ9 269 aa16.27■□□□□ 0.2
RTF1-202ENST00000462276 GPATCH8Q9UKJ3 1502 aaKnown RBP16.27■□□□□ 0.2
RTF1-202ENST00000462276 RRBP1Q9P2E9 1410 aaKnown RBP16.27■□□□□ 0.19
RTF1-202ENST00000462276 PLCH2O75038 1416 aa16.26■□□□□ 0.19
RTF1-202ENST00000462276 FAM69CQ0P6D2 419 aa16.25■□□□□ 0.19
RTF1-202ENST00000462276 FGD6Q6ZV73 1430 aa16.25■□□□□ 0.19
RTF1-202ENST00000462276 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.24■□□□□ 0.19
RTF1-202ENST00000462276 GLI2P10070 1586 aa16.23■□□□□ 0.19
RTF1-202ENST00000462276 CD109Q6YHK3 1445 aa16.23■□□□□ 0.19
RTF1-202ENST00000462276 RSPH4AQ5TD94 716 aa16.23■□□□□ 0.19
RTF1-202ENST00000462276 ARAP3Q8WWN8 1544 aa16.23■□□□□ 0.19
RTF1-202ENST00000462276 ABCA9Q8IUA7 1624 aa16.19■□□□□ 0.18
RTF1-202ENST00000462276 FAM50AQ14320 339 aaKnown RBP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms