RNA–Protein interactions for RNA: ENST00000462276.1

RTF1-202, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-202ENST00000462276 NISCHQ9Y2I1 1504 aa24.83■■□□□ 1.57
RTF1-202ENST00000462276 CCDC180Q9P1Z9 1646 aa21.77■■□□□ 1.07
RTF1-202ENST00000462276 ABCC9O60706 1549 aa20.88■□□□□ 0.93
RTF1-202ENST00000462276 ZCCHC6Q5VYS8 1495 aaKnown RBP20.76■□□□□ 0.91
RTF1-202ENST00000462276 DCAF1Q9Y4B6 1507 aa20.63■□□□□ 0.89
RTF1-202ENST00000462276 DCAF8L2P0C7V8 631 aa20.61■□□□□ 0.89
RTF1-202ENST00000462276 MYO15BQ96JP2 1530 aa20.58■□□□□ 0.88
RTF1-202ENST00000462276 NACADO15069 1562 aa20.46■□□□□ 0.87
RTF1-202ENST00000462276 RB1CC1Q8TDY2 1594 aa20.34■□□□□ 0.85
RTF1-202ENST00000462276 SCRIBQ14160 1630 aa19.86■□□□□ 0.77
RTF1-202ENST00000462276 SHROOM4Q9ULL8 1493 aa19.84■□□□□ 0.77
RTF1-202ENST00000462276 DNAJC5BQ9UF47 199 aa19.71■□□□□ 0.75
RTF1-202ENST00000462276 PABPN1Q86U42 306 aaKnown RBP eCLIP19.66■□□□□ 0.74
RTF1-202ENST00000462276 BICRAQ9NZM4 1560 aa19.62■□□□□ 0.73
RTF1-202ENST00000462276 UNC13AQ9UPW8 1703 aa19.62■□□□□ 0.73
RTF1-202ENST00000462276 CECR2Q9BXF3 1484 aa19.24■□□□□ 0.67
RTF1-202ENST00000462276 BAZ1AQ9NRL2 1556 aaPredicted RBP19.22■□□□□ 0.67
RTF1-202ENST00000462276 RSF1Q96T23 1441 aaPredicted RBP19.13■□□□□ 0.65
RTF1-202ENST00000462276 EIF4G1Q04637 1599 aaKnown RBP19.1■□□□□ 0.65
RTF1-202ENST00000462276 MROH2BQ7Z745 1585 aa19.09■□□□□ 0.65
RTF1-202ENST00000462276 SMARCA4P51532 1647 aa19.08■□□□□ 0.65
RTF1-202ENST00000462276 SUPT5HO00267 1087 aaKnown RBP19■□□□□ 0.63
RTF1-202ENST00000462276 SMARCA2P51531 1590 aa18.97■□□□□ 0.63
RTF1-202ENST00000462276 ATAD2BQ9ULI0 1458 aa18.97■□□□□ 0.63
RTF1-202ENST00000462276 PEG3Q9GZU2 1588 aa18.96■□□□□ 0.63
RTF1-202ENST00000462276 NCAPD3P42695 1498 aa18.94■□□□□ 0.62
RTF1-202ENST00000462276 CC2D2AQ9P2K1 1620 aa18.87■□□□□ 0.61
RTF1-202ENST00000462276 BAZ1BQ9UIG0 1483 aaKnown RBP18.82■□□□□ 0.6
RTF1-202ENST00000462276 WIZO95785 1651 aa18.82■□□□□ 0.6
RTF1-202ENST00000462276 HMGXB3Q12766 1538 aa18.8■□□□□ 0.6
RTF1-202ENST00000462276 TOP2AP11388 1531 aaKnown RBP18.75■□□□□ 0.59
RTF1-202ENST00000462276 CCDC88BA6NC98 1476 aa18.56■□□□□ 0.56
RTF1-202ENST00000462276 AEBP2Q6ZN18 517 aaPredicted RBP18.46■□□□□ 0.55
RTF1-202ENST00000462276 CADPSQ9ULU8 1353 aa18.42■□□□□ 0.54
RTF1-202ENST00000462276 CFTRP13569 1480 aa18.37■□□□□ 0.53
RTF1-202ENST00000462276 LAMC3Q9Y6N6 1575 aa18.27■□□□□ 0.52
RTF1-202ENST00000462276 PDS5BQ9NTI5 1447 aa18.24■□□□□ 0.51
RTF1-202ENST00000462276 DNAJC5Q9H3Z4 198 aa18.2■□□□□ 0.5
RTF1-202ENST00000462276 NESP48681 1621 aa18.18■□□□□ 0.5
RTF1-202ENST00000462276 FANCD2Q9BXW9 1451 aa18.14■□□□□ 0.49
RTF1-202ENST00000462276 CEP164Q9UPV0 1460 aa18.07■□□□□ 0.48
RTF1-202ENST00000462276 CHIC1Q5VXU3 224 aa18.05■□□□□ 0.48
RTF1-202ENST00000462276 WRNQ14191 1432 aaPredicted RBP eCLIP18.03■□□□□ 0.48
RTF1-202ENST00000462276 ERCC6Q03468 1493 aa18.02■□□□□ 0.48
RTF1-202ENST00000462276 ABCC8Q09428 1581 aa18.02■□□□□ 0.48
RTF1-202ENST00000462276 PRDM2Q13029 1718 aa18.01■□□□□ 0.47
RTF1-202ENST00000462276 TRIM41Q8WV44 630 aa18■□□□□ 0.47
RTF1-202ENST00000462276 MRC2Q9UBG0 1479 aa17.94■□□□□ 0.46
RTF1-202ENST00000462276 CUX2O14529 1486 aa17.93■□□□□ 0.46
RTF1-202ENST00000462276 CUX1P39880 1505 aa17.88■□□□□ 0.45
RTF1-202ENST00000462276 URB2Q14146 1524 aaKnown RBP17.88■□□□□ 0.45
RTF1-202ENST00000462276 TOPBP1Q92547 1522 aa17.88■□□□□ 0.45
RTF1-202ENST00000462276 DNMBPQ6XZF7 1577 aa17.87■□□□□ 0.45
RTF1-202ENST00000462276 KIF21AQ7Z4S6 1674 aa17.86■□□□□ 0.45
RTF1-202ENST00000462276 TOP2BQ02880 1626 aa17.85■□□□□ 0.45
RTF1-202ENST00000462276 WDR62O43379 1518 aa17.82■□□□□ 0.44
RTF1-202ENST00000462276 SYNJ1O43426 1573 aa17.82■□□□□ 0.44
RTF1-202ENST00000462276 BIVM-ERCC5R4GMW8 1640 aa17.8■□□□□ 0.44
RTF1-202ENST00000462276 FGD5Q6ZNL6 1462 aa17.76■□□□□ 0.43
RTF1-202ENST00000462276 SOGA1O94964 1423 aa17.76■□□□□ 0.43
RTF1-202ENST00000462276 POLA1P09884 1462 aaPredicted RBP17.75■□□□□ 0.43
RTF1-202ENST00000462276 THOC2Q8NI27 1593 aaKnown RBP17.75■□□□□ 0.43
RTF1-202ENST00000462276 IFT140Q96RY7 1462 aa17.71■□□□□ 0.43
RTF1-202ENST00000462276 EEA1Q15075 1411 aa17.68■□□□□ 0.42
RTF1-202ENST00000462276 ABCA10Q8WWZ4 1543 aa17.67■□□□□ 0.42
RTF1-202ENST00000462276 KIF27Q86VH2 1401 aa17.66■□□□□ 0.42
RTF1-202ENST00000462276 RAD54L2Q9Y4B4 1467 aa17.65■□□□□ 0.42
RTF1-202ENST00000462276 CSRNP3Q8WYN3 585 aa17.59■□□□□ 0.41
RTF1-202ENST00000462276 TARBP1Q13395 1621 aaKnown RBP17.58■□□□□ 0.4
RTF1-202ENST00000462276 TDRD9Q8NDG6 1382 aaKnown RBP17.57■□□□□ 0.4
RTF1-202ENST00000462276 WDR97A6NE52 1622 aa17.56■□□□□ 0.4
RTF1-202ENST00000462276 IGF1RP08069 1367 aa17.53■□□□□ 0.4
RTF1-202ENST00000462276 GAPVD1Q14C86 1478 aa17.53■□□□□ 0.4
RTF1-202ENST00000462276 FAM9AQ8IZU1 332 aaPredicted RBP17.51■□□□□ 0.39
RTF1-202ENST00000462276 AQRO60306 1485 aaKnown RBP eCLIP17.5■□□□□ 0.392e-8■□□□□ 9.6
RTF1-202ENST00000462276 RUSC2Q8N2Y8 1516 aa17.49■□□□□ 0.39
RTF1-202ENST00000462276 ZNF608Q9ULD9 1512 aaPredicted RBP17.49■□□□□ 0.39
RTF1-202ENST00000462276 GRIN2BQ13224 1484 aa17.49■□□□□ 0.39
RTF1-202ENST00000462276 ERICH3Q5RHP9 1530 aa17.47■□□□□ 0.39
RTF1-202ENST00000462276 ABCA5Q8WWZ7 1642 aa17.44■□□□□ 0.38
RTF1-202ENST00000462276 CARMIL1Q5VZK9 1371 aa17.43■□□□□ 0.38
RTF1-202ENST00000462276 PRXQ9BXM0 1461 aa17.41■□□□□ 0.38
RTF1-202ENST00000462276 FHAD1B1AJZ9 1412 aa17.39■□□□□ 0.38
RTF1-202ENST00000462276 MAGI1Q96QZ7 1491 aaPredicted RBP17.39■□□□□ 0.37
RTF1-202ENST00000462276 EIF4G3O43432 1585 aaKnown RBP17.38■□□□□ 0.37
RTF1-202ENST00000462276 RAPGEF2Q9Y4G8 1499 aa17.35■□□□□ 0.37
RTF1-202ENST00000462276 CHMP7Q8WUX9 453 aaPredicted RBP17.33■□□□□ 0.36
RTF1-202ENST00000462276 SNAPC4Q5SXM2 1469 aa17.32■□□□□ 0.36
RTF1-202ENST00000462276 CUL7Q14999 1698 aa17.32■□□□□ 0.36
RTF1-202ENST00000462276 SYNJ2O15056 1496 aa17.31■□□□□ 0.36
RTF1-202ENST00000462276 GOLGA3Q08378 1498 aa17.31■□□□□ 0.36
RTF1-202ENST00000462276 KIF21BO75037 1637 aa17.29■□□□□ 0.36
RTF1-202ENST00000462276 UBTFP17480 764 aaKnown RBP17.28■□□□□ 0.36
RTF1-202ENST00000462276 LOC105371045A0A1W2PR82 267 aa17.26■□□□□ 0.35
RTF1-202ENST00000462276 PBRM1Q86U86 1689 aa17.26■□□□□ 0.35
RTF1-202ENST00000462276 ADAMTS12P58397 1594 aa17.25■□□□□ 0.35
RTF1-202ENST00000462276 FBLN2P98095 1184 aa17.25■□□□□ 0.35
RTF1-202ENST00000462276 TNIKQ9UKE5 1360 aa17.24■□□□□ 0.35
RTF1-202ENST00000462276 GRIN2AQ12879 1464 aa17.22■□□□□ 0.35
RTF1-202ENST00000462276 EHMT2Q96KQ7 1210 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms