RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 IGF1RP08069 1367 aa17.55■□□□□ 0.4
SF3A3-204ENST00000462258 PRG4Q92954 1404 aaPredicted RBP17.48■□□□□ 0.39
SF3A3-204ENST00000462258 KIAA0586Q9BVV6 1533 aa17.47■□□□□ 0.39
SF3A3-204ENST00000462258 CARMIL1Q5VZK9 1371 aa17.47■□□□□ 0.39
SF3A3-204ENST00000462258 JPH4Q96JJ6 628 aa17.42■□□□□ 0.38
SF3A3-204ENST00000462258 IQGAP2Q13576 1575 aa17.41■□□□□ 0.38
SF3A3-204ENST00000462258 TRHP20396 242 aaPredicted RBP17.39■□□□□ 0.37
SF3A3-204ENST00000462258 RAPGEF2Q9Y4G8 1499 aa17.38■□□□□ 0.37
SF3A3-204ENST00000462258 CTTNBP2Q8WZ74 1663 aa17.36■□□□□ 0.37
SF3A3-204ENST00000462258 ADCY10Q96PN6 1610 aa17.33■□□□□ 0.37
SF3A3-204ENST00000462258 CARMIL2Q6F5E8 1435 aa17.29■□□□□ 0.36
SF3A3-204ENST00000462258 KIF13AQ9H1H9 1805 aa17.28■□□□□ 0.36
SF3A3-204ENST00000462258 UGGT2Q9NYU1 1516 aa17.28■□□□□ 0.36
SF3A3-204ENST00000462258 PRXQ9BXM0 1461 aa17.27■□□□□ 0.36
SF3A3-204ENST00000462258 KIAA0556O60303 1618 aa17.27■□□□□ 0.36
SF3A3-204ENST00000462258 DISP1Q96F81 1524 aa17.26■□□□□ 0.35
SF3A3-204ENST00000462258 MAPKBP1O60336 1514 aa17.26■□□□□ 0.35
SF3A3-204ENST00000462258 TNIKQ9UKE5 1360 aa17.23■□□□□ 0.35
SF3A3-204ENST00000462258 PTPRGP23470 1445 aa17.22■□□□□ 0.35
SF3A3-204ENST00000462258 DIP2BQ9P265 1576 aa17.2■□□□□ 0.34
SF3A3-204ENST00000462258 EEA1Q15075 1411 aa17.19■□□□□ 0.34
SF3A3-204ENST00000462258 TTBK1Q5TCY1 1321 aaPredicted RBP17.17■□□□□ 0.34
SF3A3-204ENST00000462258 ABCC2Q92887 1545 aa17.16■□□□□ 0.34
SF3A3-204ENST00000462258 NPM1P06748 294 aaKnown RBP eCLIP17.16■□□□□ 0.34
SF3A3-204ENST00000462258 ABCC10Q5T3U5 1492 aa17.16■□□□□ 0.34
SF3A3-204ENST00000462258 UHRF1BP1LA0JNW5 1464 aa17.15■□□□□ 0.34
SF3A3-204ENST00000462258 GOLGA3Q08378 1498 aa17.15■□□□□ 0.34
SF3A3-204ENST00000462258 UACAQ9BZF9 1416 aa17.13■□□□□ 0.33
SF3A3-204ENST00000462258 ZCCHC11Q5TAX3 1644 aaKnown RBP17.1■□□□□ 0.33
SF3A3-204ENST00000462258 CSRNP3Q8WYN3 585 aa17.1■□□□□ 0.33
SF3A3-204ENST00000462258 KIF21BO75037 1637 aa17.1■□□□□ 0.33
SF3A3-204ENST00000462258 SAMD9Q5K651 1589 aa17.08■□□□□ 0.32
SF3A3-204ENST00000462258 KDM5BQ9UGL1 1544 aa17.07■□□□□ 0.32
SF3A3-204ENST00000462258 TSPOAP1O95153 1857 aa17.06■□□□□ 0.32
SF3A3-204ENST00000462258 ABCA8O94911 1581 aa17.06■□□□□ 0.32
SF3A3-204ENST00000462258 ASXL2Q76L83 1435 aa17.05■□□□□ 0.32
SF3A3-204ENST00000462258 FAM69CQ0P6D2 419 aa17.05■□□□□ 0.32
SF3A3-204ENST00000462258 PLB1Q6P1J6 1458 aa17.05■□□□□ 0.32
SF3A3-204ENST00000462258 GLI2P10070 1586 aa17.02■□□□□ 0.32
SF3A3-204ENST00000462258 FAM9AQ8IZU1 332 aaPredicted RBP17.02■□□□□ 0.32
SF3A3-204ENST00000462258 PPRC1Q5VV67 1664 aaKnown RBP16.99■□□□□ 0.31
SF3A3-204ENST00000462258 KDM6BO15054 1643 aa16.98■□□□□ 0.31
SF3A3-204ENST00000462258 MAP3K4Q9Y6R4 1608 aa16.97■□□□□ 0.31
SF3A3-204ENST00000462258 EPRSP07814 1512 aaKnown RBP16.96■□□□□ 0.31
SF3A3-204ENST00000462258 WDR7Q9Y4E6 1490 aa16.96■□□□□ 0.31
SF3A3-204ENST00000462258 RAPGEF6Q8TEU7 1601 aa16.96■□□□□ 0.3
SF3A3-204ENST00000462258 EFCAB5A4FU69 1503 aa16.96■□□□□ 0.3
SF3A3-204ENST00000462258 P3H3Q8IVL6 736 aa16.92■□□□□ 0.3
SF3A3-204ENST00000462258 FHOD3Q2V2M9 1422 aa16.91■□□□□ 0.3
SF3A3-204ENST00000462258 CFAP43Q8NDM7 1665 aa16.91■□□□□ 0.3
SF3A3-204ENST00000462258 RANGAP1P46060 587 aaPredicted RBP16.87■□□□□ 0.29
SF3A3-204ENST00000462258 TEX14Q8IWB6 1497 aa16.86■□□□□ 0.29
SF3A3-204ENST00000462258 ATP10BO94823 1461 aa16.85■□□□□ 0.29
SF3A3-204ENST00000462258 NUP153P49790 1475 aaKnown RBP16.85■□□□□ 0.29
SF3A3-204ENST00000462258 ARID3CA6NKF2 412 aa16.82■□□□□ 0.28
SF3A3-204ENST00000462258 EHMT2Q96KQ7 1210 aa16.82■□□□□ 0.28
SF3A3-204ENST00000462258 UBTFP17480 764 aaKnown RBP16.8■□□□□ 0.28
SF3A3-204ENST00000462258 ABCA9Q8IUA7 1624 aa16.8■□□□□ 0.28
SF3A3-204ENST00000462258 MAGI3Q5TCQ9 1506 aa16.79■□□□□ 0.28
SF3A3-204ENST00000462258 ARHGAP35Q9NRY4 1499 aa16.79■□□□□ 0.28
SF3A3-204ENST00000462258 CD109Q6YHK3 1445 aa16.78■□□□□ 0.28
SF3A3-204ENST00000462258 HECW1Q76N89 1606 aa16.77■□□□□ 0.27
SF3A3-204ENST00000462258 KCNH8Q96L42 1107 aa16.75■□□□□ 0.27
SF3A3-204ENST00000462258 COL17A1Q9UMD9 1497 aaPredicted RBP16.74■□□□□ 0.27
SF3A3-204ENST00000462258 FMN1Q68DA7 1419 aa16.73■□□□□ 0.27
SF3A3-204ENST00000462258 CDK13Q14004 1512 aaKnown RBP16.73■□□□□ 0.27
SF3A3-204ENST00000462258 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.71■□□□□ 0.27
SF3A3-204ENST00000462258 HNRNPUL2Q1KMD3 747 aaKnown RBP16.71■□□□□ 0.27
SF3A3-204ENST00000462258 LRRIQ1Q96JM4 1722 aa16.69■□□□□ 0.26
SF3A3-204ENST00000462258 PCF11O94913 1555 aaKnown RBP16.68■□□□□ 0.26
SF3A3-204ENST00000462258 TTC37Q6PGP7 1564 aa16.68■□□□□ 0.26
SF3A3-204ENST00000462258 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.65■□□□□ 0.26
SF3A3-204ENST00000462258 CFAP74Q9C0B2 1584 aa16.65■□□□□ 0.26
SF3A3-204ENST00000462258 ARAP3Q8WWN8 1544 aa16.65■□□□□ 0.26
SF3A3-204ENST00000462258 NEO1Q92859 1461 aa16.64■□□□□ 0.25
SF3A3-204ENST00000462258 KIF14Q15058 1648 aa16.61■□□□□ 0.25
SF3A3-204ENST00000462258 PLEKHD1A6NEE1 506 aa16.61■□□□□ 0.25
SF3A3-204ENST00000462258 FRMPD1Q5SYB0 1578 aa16.6■□□□□ 0.25
SF3A3-204ENST00000462258 MYO5CQ9NQX4 1742 aa16.6■□□□□ 0.25
SF3A3-204ENST00000462258 PHLDB1Q86UU1 1377 aa16.59■□□□□ 0.25
SF3A3-204ENST00000462258 CLIP1P30622 1438 aa16.59■□□□□ 0.25
SF3A3-204ENST00000462258 ADGRL1O94910 1474 aa16.59■□□□□ 0.25
SF3A3-204ENST00000462258 ATP1B4Q9UN42 357 aaPredicted RBP16.58■□□□□ 0.24
SF3A3-204ENST00000462258 CASKIN1Q8WXD9 1431 aa16.58■□□□□ 0.24
SF3A3-204ENST00000462258 CCDC18Q5T9S5 1454 aa16.58■□□□□ 0.24
SF3A3-204ENST00000462258 FYCO1Q9BQS8 1478 aa16.58■□□□□ 0.24
SF3A3-204ENST00000462258 RICTORQ6R327 1708 aa16.56■□□□□ 0.24
SF3A3-204ENST00000462258 FANCAO15360 1455 aa16.56■□□□□ 0.24
SF3A3-204ENST00000462258 TROQ12816 1431 aaPredicted RBP16.54■□□□□ 0.24
SF3A3-204ENST00000462258 KDM4FA0A1W2PPD8 638 aa16.54■□□□□ 0.24
SF3A3-204ENST00000462258 ARHGEF40Q8TER5 1519 aa16.52■□□□□ 0.24
SF3A3-204ENST00000462258 AKNAQ7Z591 1439 aa16.52■□□□□ 0.23
SF3A3-204ENST00000462258 CDK11AQ9UQ88 783 aaPredicted RBP16.51■□□□□ 0.23
SF3A3-204ENST00000462258 DENND4BO75064 1496 aaPredicted RBP16.5■□□□□ 0.23
SF3A3-204ENST00000462258 ZMYM4Q5VZL5 1548 aa16.5■□□□□ 0.23
SF3A3-204ENST00000462258 PREX2Q70Z35 1606 aa16.49■□□□□ 0.23
SF3A3-204ENST00000462258 PLCH2O75038 1416 aa16.49■□□□□ 0.23
SF3A3-204ENST00000462258 CEP162Q5TB80 1403 aa16.48■□□□□ 0.23
SF3A3-204ENST00000462258 RAPGEF3O95398 923 aa16.47■□□□□ 0.23
SF3A3-204ENST00000462258 CDC42BPBQ9Y5S2 1711 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms