RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 NISCHQ9Y2I1 1504 aa25.22■■□□□ 1.63
SF3A3-204ENST00000462258 CCDC180Q9P1Z9 1646 aa22.62■■□□□ 1.21
SF3A3-204ENST00000462258 ABCC9O60706 1549 aa22.22■■□□□ 1.15
SF3A3-204ENST00000462258 RB1CC1Q8TDY2 1594 aa21.33■■□□□ 1.01
SF3A3-204ENST00000462258 NACADO15069 1562 aa21.24■□□□□ 0.99
SF3A3-204ENST00000462258 MYO15BQ96JP2 1530 aa21.04■□□□□ 0.96
SF3A3-204ENST00000462258 DCAF8L2P0C7V8 631 aa21.01■□□□□ 0.95
SF3A3-204ENST00000462258 ZCCHC6Q5VYS8 1495 aaKnown RBP21.01■□□□□ 0.95
SF3A3-204ENST00000462258 UNC13AQ9UPW8 1703 aa20.92■□□□□ 0.94
SF3A3-204ENST00000462258 DCAF1Q9Y4B6 1507 aa20.88■□□□□ 0.93
SF3A3-204ENST00000462258 BICRAQ9NZM4 1560 aa20.69■□□□□ 0.9
SF3A3-204ENST00000462258 PABPN1Q86U42 306 aaKnown RBP eCLIP20.64■□□□□ 0.89
SF3A3-204ENST00000462258 SCRIBQ14160 1630 aa20.59■□□□□ 0.89
SF3A3-204ENST00000462258 SHROOM4Q9ULL8 1493 aa20.48■□□□□ 0.87
SF3A3-204ENST00000462258 DNAJC5BQ9UF47 199 aa20.46■□□□□ 0.87
SF3A3-204ENST00000462258 EIF4G1Q04637 1599 aaKnown RBP20.17■□□□□ 0.82
SF3A3-204ENST00000462258 CC2D2AQ9P2K1 1620 aa20.13■□□□□ 0.81
SF3A3-204ENST00000462258 CECR2Q9BXF3 1484 aa19.99■□□□□ 0.79
SF3A3-204ENST00000462258 SMARCA4P51532 1647 aa19.67■□□□□ 0.74
SF3A3-204ENST00000462258 BAZ1AQ9NRL2 1556 aaPredicted RBP19.59■□□□□ 0.73
SF3A3-204ENST00000462258 SMARCA2P51531 1590 aa19.55■□□□□ 0.72
SF3A3-204ENST00000462258 NCAPD3P42695 1498 aa19.54■□□□□ 0.72
SF3A3-204ENST00000462258 ATAD2BQ9ULI0 1458 aa19.54■□□□□ 0.72
SF3A3-204ENST00000462258 HMGXB3Q12766 1538 aa19.51■□□□□ 0.71
SF3A3-204ENST00000462258 PEG3Q9GZU2 1588 aa19.47■□□□□ 0.71
SF3A3-204ENST00000462258 MROH2BQ7Z745 1585 aa19.43■□□□□ 0.7
SF3A3-204ENST00000462258 BAZ1BQ9UIG0 1483 aaKnown RBP19.41■□□□□ 0.7
SF3A3-204ENST00000462258 WIZO95785 1651 aa19.25■□□□□ 0.67
SF3A3-204ENST00000462258 ERCC6Q03468 1493 aa19.18■□□□□ 0.66
SF3A3-204ENST00000462258 NESP48681 1621 aa19.17■□□□□ 0.66
SF3A3-204ENST00000462258 LAMC3Q9Y6N6 1575 aa19.14■□□□□ 0.65
SF3A3-204ENST00000462258 RSF1Q96T23 1441 aaPredicted RBP19.09■□□□□ 0.65
SF3A3-204ENST00000462258 CUX2O14529 1486 aa19.07■□□□□ 0.64
SF3A3-204ENST00000462258 KIF21AQ7Z4S6 1674 aa19.04■□□□□ 0.64
SF3A3-204ENST00000462258 TOP2AP11388 1531 aaKnown RBP19.04■□□□□ 0.64
SF3A3-204ENST00000462258 THOC2Q8NI27 1593 aaKnown RBP19.02■□□□□ 0.63
SF3A3-204ENST00000462258 CADPSQ9ULU8 1353 aa18.94■□□□□ 0.62
SF3A3-204ENST00000462258 PDS5BQ9NTI5 1447 aa18.94■□□□□ 0.62
SF3A3-204ENST00000462258 PRDM2Q13029 1718 aa18.83■□□□□ 0.61
SF3A3-204ENST00000462258 CFTRP13569 1480 aa18.83■□□□□ 0.6
SF3A3-204ENST00000462258 MRC2Q9UBG0 1479 aa18.81■□□□□ 0.6
SF3A3-204ENST00000462258 CEP164Q9UPV0 1460 aa18.8■□□□□ 0.6
SF3A3-204ENST00000462258 WDR62O43379 1518 aa18.79■□□□□ 0.6
SF3A3-204ENST00000462258 FANCD2Q9BXW9 1451 aa18.77■□□□□ 0.6
SF3A3-204ENST00000462258 CCDC88BA6NC98 1476 aa18.74■□□□□ 0.59
SF3A3-204ENST00000462258 URB2Q14146 1524 aaKnown RBP18.61■□□□□ 0.57
SF3A3-204ENST00000462258 DNAJC5Q9H3Z4 198 aa18.59■□□□□ 0.57
SF3A3-204ENST00000462258 TOPBP1Q92547 1522 aa18.47■□□□□ 0.55
SF3A3-204ENST00000462258 DNMBPQ6XZF7 1577 aa18.47■□□□□ 0.55
SF3A3-204ENST00000462258 ABCC8Q09428 1581 aa18.42■□□□□ 0.54
SF3A3-204ENST00000462258 IFT140Q96RY7 1462 aa18.39■□□□□ 0.53
SF3A3-204ENST00000462258 SUPT5HO00267 1087 aaKnown RBP18.38■□□□□ 0.53
SF3A3-204ENST00000462258 EIF4G3O43432 1585 aaKnown RBP18.33■□□□□ 0.52
SF3A3-204ENST00000462258 ZNF608Q9ULD9 1512 aaPredicted RBP18.32■□□□□ 0.52
SF3A3-204ENST00000462258 TARBP1Q13395 1621 aaKnown RBP18.31■□□□□ 0.52
SF3A3-204ENST00000462258 POLA1P09884 1462 aaPredicted RBP18.3■□□□□ 0.52
SF3A3-204ENST00000462258 CUX1P39880 1505 aa18.26■□□□□ 0.51
SF3A3-204ENST00000462258 FGD5Q6ZNL6 1462 aa18.23■□□□□ 0.51
SF3A3-204ENST00000462258 WDR97A6NE52 1622 aa18.19■□□□□ 0.5
SF3A3-204ENST00000462258 RAD54L2Q9Y4B4 1467 aa18.19■□□□□ 0.5
SF3A3-204ENST00000462258 CHD1O14646 1710 aa18.15■□□□□ 0.5
SF3A3-204ENST00000462258 AQRO60306 1485 aaKnown RBP eCLIP18.15■□□□□ 0.53e-7■■■■■ 39.9
SF3A3-204ENST00000462258 SOGA1O94964 1423 aa18.15■□□□□ 0.5
SF3A3-204ENST00000462258 OSCARQ8IYS5 282 aa18.11■□□□□ 0.49
SF3A3-204ENST00000462258 BIVM-ERCC5R4GMW8 1640 aa18.11■□□□□ 0.49
SF3A3-204ENST00000462258 PBRM1Q86U86 1689 aa18.08■□□□□ 0.48
SF3A3-204ENST00000462258 TOP2BQ02880 1626 aa18.07■□□□□ 0.48
SF3A3-204ENST00000462258 TDRD9Q8NDG6 1382 aaKnown RBP18.06■□□□□ 0.48
SF3A3-204ENST00000462258 SYNJ1O43426 1573 aa18.06■□□□□ 0.48
SF3A3-204ENST00000462258 SNAPC4Q5SXM2 1469 aa18.05■□□□□ 0.48
SF3A3-204ENST00000462258 ABCA5Q8WWZ7 1642 aa18.05■□□□□ 0.48
SF3A3-204ENST00000462258 WRNQ14191 1432 aaPredicted RBP eCLIP18.03■□□□□ 0.48
SF3A3-204ENST00000462258 ABCA10Q8WWZ4 1543 aa18.03■□□□□ 0.48
SF3A3-204ENST00000462258 GRIN2BQ13224 1484 aa18.01■□□□□ 0.47
SF3A3-204ENST00000462258 MAGI1Q96QZ7 1491 aaPredicted RBP18.01■□□□□ 0.47
SF3A3-204ENST00000462258 AEBP2Q6ZN18 517 aaPredicted RBP18■□□□□ 0.47
SF3A3-204ENST00000462258 RIMBP3CA6NJZ7 1639 aa18■□□□□ 0.47
SF3A3-204ENST00000462258 RIMBP3BA6NNM3 1639 aa18■□□□□ 0.47
SF3A3-204ENST00000462258 RIMBP3Q9UFD9 1639 aa18■□□□□ 0.47
SF3A3-204ENST00000462258 GAPVD1Q14C86 1478 aa17.98■□□□□ 0.47
SF3A3-204ENST00000462258 ARHGEF11O15085 1522 aa17.95■□□□□ 0.46
SF3A3-204ENST00000462258 SYNJ2O15056 1496 aa17.94■□□□□ 0.46
SF3A3-204ENST00000462258 FBLN2P98095 1184 aa17.93■□□□□ 0.46
SF3A3-204ENST00000462258 TRIM41Q8WV44 630 aa17.93■□□□□ 0.46
SF3A3-204ENST00000462258 CLASP1Q7Z460 1538 aa17.9■□□□□ 0.46
SF3A3-204ENST00000462258 ADAMTS12P58397 1594 aa17.9■□□□□ 0.46
SF3A3-204ENST00000462258 CHMP7Q8WUX9 453 aaPredicted RBP17.84■□□□□ 0.45
SF3A3-204ENST00000462258 ERICH3Q5RHP9 1530 aa17.82■□□□□ 0.44
SF3A3-204ENST00000462258 GRIN2AQ12879 1464 aa17.81■□□□□ 0.44
SF3A3-204ENST00000462258 ARAP1Q96P48 1450 aa17.79■□□□□ 0.44
SF3A3-204ENST00000462258 FHAD1B1AJZ9 1412 aa17.76■□□□□ 0.43
SF3A3-204ENST00000462258 CEP170Q5SW79 1584 aa17.75■□□□□ 0.43
SF3A3-204ENST00000462258 NUP160Q12769 1436 aa17.72■□□□□ 0.43
SF3A3-204ENST00000462258 CUL7Q14999 1698 aa17.68■□□□□ 0.42
SF3A3-204ENST00000462258 CYB5RLQ6IPT4 315 aa17.67■□□□□ 0.42
SF3A3-204ENST00000462258 KIF27Q86VH2 1401 aa17.66■□□□□ 0.42
SF3A3-204ENST00000462258 SHROOM2Q13796 1616 aa17.66■□□□□ 0.42
SF3A3-204ENST00000462258 RUSC2Q8N2Y8 1516 aa17.65■□□□□ 0.42
SF3A3-204ENST00000462258 ERCC6L2Q5T890 1561 aa17.62■□□□□ 0.41
SF3A3-204ENST00000462258 CHIC1Q5VXU3 224 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms