RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 ARAP1Q96P48 1450 aa20.01■□□□□ 0.79
VPS52-213ENST00000461743 KIAA0586Q9BVV6 1533 aa20.01■□□□□ 0.79
VPS52-213ENST00000461743 IQGAP2Q13576 1575 aa19.98■□□□□ 0.79
VPS52-213ENST00000461743 PRXQ9BXM0 1461 aa19.97■□□□□ 0.79
VPS52-213ENST00000461743 CHIC1Q5VXU3 224 aa19.94■□□□□ 0.78
VPS52-213ENST00000461743 ERCC6L2Q5T890 1561 aa19.93■□□□□ 0.78
VPS52-213ENST00000461743 KIF21BO75037 1637 aa19.9■□□□□ 0.78
VPS52-213ENST00000461743 PRG4Q92954 1404 aaPredicted RBP19.88■□□□□ 0.77
VPS52-213ENST00000461743 UGGT2Q9NYU1 1516 aa19.85■□□□□ 0.77
VPS52-213ENST00000461743 JPH4Q96JJ6 628 aa19.84■□□□□ 0.77
VPS52-213ENST00000461743 CSRNP3Q8WYN3 585 aa19.82■□□□□ 0.76
VPS52-213ENST00000461743 CYB5RLQ6IPT4 315 aa19.8■□□□□ 0.76
VPS52-213ENST00000461743 KIAA0556O60303 1618 aa19.8■□□□□ 0.76
VPS52-213ENST00000461743 CARMIL2Q6F5E8 1435 aa19.79■□□□□ 0.76
VPS52-213ENST00000461743 DISP1Q96F81 1524 aa19.76■□□□□ 0.75
VPS52-213ENST00000461743 GOLGA3Q08378 1498 aa19.73■□□□□ 0.75
VPS52-213ENST00000461743 SAMD9Q5K651 1589 aa19.7■□□□□ 0.74
VPS52-213ENST00000461743 ADCY10Q96PN6 1610 aa19.69■□□□□ 0.74
VPS52-213ENST00000461743 TNIKQ9UKE5 1360 aa19.69■□□□□ 0.74
VPS52-213ENST00000461743 PTPRGP23470 1445 aa19.63■□□□□ 0.73
VPS52-213ENST00000461743 FAM9AQ8IZU1 332 aaPredicted RBP19.63■□□□□ 0.73
VPS52-213ENST00000461743 EFCAB5A4FU69 1503 aa19.62■□□□□ 0.73
VPS52-213ENST00000461743 UHRF1BP1LA0JNW5 1464 aa19.61■□□□□ 0.73
VPS52-213ENST00000461743 ABCC2Q92887 1545 aa19.61■□□□□ 0.73
VPS52-213ENST00000461743 MAPKBP1O60336 1514 aa19.6■□□□□ 0.73
VPS52-213ENST00000461743 UACAQ9BZF9 1416 aa19.55■□□□□ 0.72
VPS52-213ENST00000461743 KIF13AQ9H1H9 1805 aa19.55■□□□□ 0.72
VPS52-213ENST00000461743 ABCA8O94911 1581 aa19.54■□□□□ 0.72
VPS52-213ENST00000461743 ZCCHC11Q5TAX3 1644 aaKnown RBP19.51■□□□□ 0.71
VPS52-213ENST00000461743 KDM5BQ9UGL1 1544 aa19.5■□□□□ 0.71
VPS52-213ENST00000461743 RAPGEF6Q8TEU7 1601 aa19.47■□□□□ 0.71
VPS52-213ENST00000461743 DIP2BQ9P265 1576 aa19.47■□□□□ 0.71
VPS52-213ENST00000461743 NPM1P06748 294 aaKnown RBP eCLIP19.46■□□□□ 0.71
VPS52-213ENST00000461743 PLB1Q6P1J6 1458 aa19.46■□□□□ 0.71
VPS52-213ENST00000461743 UBTFP17480 764 aaKnown RBP19.44■□□□□ 0.7
VPS52-213ENST00000461743 ABCC10Q5T3U5 1492 aa19.42■□□□□ 0.7
VPS52-213ENST00000461743 FHOD3Q2V2M9 1422 aa19.42■□□□□ 0.7
VPS52-213ENST00000461743 TTBK1Q5TCY1 1321 aaPredicted RBP19.4■□□□□ 0.7
VPS52-213ENST00000461743 ARHGAP35Q9NRY4 1499 aa19.4■□□□□ 0.7
VPS52-213ENST00000461743 TRHP20396 242 aaPredicted RBP19.38■□□□□ 0.69
VPS52-213ENST00000461743 GLI2P10070 1586 aa19.37■□□□□ 0.69
VPS52-213ENST00000461743 ASXL2Q76L83 1435 aa19.36■□□□□ 0.69
VPS52-213ENST00000461743 FMN1Q68DA7 1419 aa19.35■□□□□ 0.69
VPS52-213ENST00000461743 HECW1Q76N89 1606 aa19.35■□□□□ 0.69
VPS52-213ENST00000461743 WDR7Q9Y4E6 1490 aa19.34■□□□□ 0.69
VPS52-213ENST00000461743 P3H3Q8IVL6 736 aa19.32■□□□□ 0.68
VPS52-213ENST00000461743 NUP153P49790 1475 aaKnown RBP19.32■□□□□ 0.68
VPS52-213ENST00000461743 MAP3K4Q9Y6R4 1608 aa19.31■□□□□ 0.68
VPS52-213ENST00000461743 CFAP43Q8NDM7 1665 aa19.3■□□□□ 0.68
VPS52-213ENST00000461743 EHMT2Q96KQ7 1210 aa19.3■□□□□ 0.68
VPS52-213ENST00000461743 TSPOAP1O95153 1857 aa19.29■□□□□ 0.68
VPS52-213ENST00000461743 EPRSP07814 1512 aaKnown RBP19.29■□□□□ 0.68
VPS52-213ENST00000461743 RANGAP1P46060 587 aaPredicted RBP19.28■□□□□ 0.68
VPS52-213ENST00000461743 ATP10BO94823 1461 aa19.28■□□□□ 0.68
VPS52-213ENST00000461743 CLIP1P30622 1438 aa19.27■□□□□ 0.68
VPS52-213ENST00000461743 PPRC1Q5VV67 1664 aaKnown RBP19.26■□□□□ 0.67
VPS52-213ENST00000461743 LRRIQ1Q96JM4 1722 aa19.25■□□□□ 0.67
VPS52-213ENST00000461743 PCF11O94913 1555 aaKnown RBP19.24■□□□□ 0.67
VPS52-213ENST00000461743 FAM69CQ0P6D2 419 aa19.22■□□□□ 0.67
VPS52-213ENST00000461743 ABCA9Q8IUA7 1624 aa19.22■□□□□ 0.67
VPS52-213ENST00000461743 FYCO1Q9BQS8 1478 aa19.21■□□□□ 0.67
VPS52-213ENST00000461743 CEP162Q5TB80 1403 aa19.2■□□□□ 0.66
VPS52-213ENST00000461743 CASKIN1Q8WXD9 1431 aa19.18■□□□□ 0.66
VPS52-213ENST00000461743 CCDC18Q5T9S5 1454 aa19.18■□□□□ 0.66
VPS52-213ENST00000461743 CDK13Q14004 1512 aaKnown RBP19.17■□□□□ 0.66
VPS52-213ENST00000461743 TEX14Q8IWB6 1497 aa19.16■□□□□ 0.66
VPS52-213ENST00000461743 MAGI3Q5TCQ9 1506 aa19.13■□□□□ 0.65
VPS52-213ENST00000461743 KDM6BO15054 1643 aa19.13■□□□□ 0.65
VPS52-213ENST00000461743 KIF14Q15058 1648 aa19.1■□□□□ 0.65
VPS52-213ENST00000461743 CFAP74Q9C0B2 1584 aa19.09■□□□□ 0.65
VPS52-213ENST00000461743 ARID3CA6NKF2 412 aa19.08■□□□□ 0.64
VPS52-213ENST00000461743 MYO5CQ9NQX4 1742 aa19.08■□□□□ 0.64
VPS52-213ENST00000461743 TTC37Q6PGP7 1564 aa19.07■□□□□ 0.64
VPS52-213ENST00000461743 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.07■□□□□ 0.64
VPS52-213ENST00000461743 HNRNPUL2Q1KMD3 747 aaKnown RBP19.07■□□□□ 0.64
VPS52-213ENST00000461743 CD109Q6YHK3 1445 aa19.07■□□□□ 0.64
VPS52-213ENST00000461743 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.05■□□□□ 0.64
VPS52-213ENST00000461743 PLEKHD1A6NEE1 506 aa19.05■□□□□ 0.64
VPS52-213ENST00000461743 CDK11AQ9UQ88 783 aaPredicted RBP19.04■□□□□ 0.64
VPS52-213ENST00000461743 TROQ12816 1431 aaPredicted RBP19.03■□□□□ 0.64
VPS52-213ENST00000461743 ARAP3Q8WWN8 1544 aa19.02■□□□□ 0.64
VPS52-213ENST00000461743 KCNH8Q96L42 1107 aa19.02■□□□□ 0.64
VPS52-213ENST00000461743 NEO1Q92859 1461 aa19.01■□□□□ 0.63
VPS52-213ENST00000461743 VPS8Q8N3P4 1428 aa19■□□□□ 0.63
VPS52-213ENST00000461743 LOC105371045A0A1W2PR82 267 aa19■□□□□ 0.63
VPS52-213ENST00000461743 PHLDB1Q86UU1 1377 aa18.99■□□□□ 0.63
VPS52-213ENST00000461743 ATP1B4Q9UN42 357 aaPredicted RBP18.98■□□□□ 0.63
VPS52-213ENST00000461743 PREX2Q70Z35 1606 aa18.97■□□□□ 0.63
VPS52-213ENST00000461743 EHBP1L1Q8N3D4 1523 aa18.97■□□□□ 0.63
VPS52-213ENST00000461743 CDC42BPAQ5VT25 1732 aa18.95■□□□□ 0.62
VPS52-213ENST00000461743 TIAM1Q13009 1591 aa18.94■□□□□ 0.62
VPS52-213ENST00000461743 CDC42BPBQ9Y5S2 1711 aa18.94■□□□□ 0.62
VPS52-213ENST00000461743 MAP3K1Q13233 1512 aa18.92■□□□□ 0.62
VPS52-213ENST00000461743 RICTORQ6R327 1708 aa18.91■□□□□ 0.62
VPS52-213ENST00000461743 FANCAO15360 1455 aa18.91■□□□□ 0.62
VPS52-213ENST00000461743 ITSN2Q9NZM3 1697 aa18.91■□□□□ 0.62
VPS52-213ENST00000461743 PLCH2O75038 1416 aa18.9■□□□□ 0.62
VPS52-213ENST00000461743 SUPT6HQ7KZ85 1726 aaKnown RBP18.89■□□□□ 0.61
VPS52-213ENST00000461743 COL17A1Q9UMD9 1497 aaPredicted RBP18.89■□□□□ 0.61
VPS52-213ENST00000461743 FRMPD1Q5SYB0 1578 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms