RNA–Protein interactions for RNA: ENST00000440048.1

VARS-217, Transcript of valyl-tRNA synthetase, humanhuman

TSL 1 (best)

Gene VARS, Length 804 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-217ENST00000440048 JPH4Q96JJ6 628 aa40.05■■■■■ 4
VARS-217ENST00000440048 KIAA0586Q9BVV6 1533 aa40.01■■■■■ 4
VARS-217ENST00000440048 PRG4Q92954 1404 aaPredicted RBP39.99■■■■□ 3.99
VARS-217ENST00000440048 RAPGEF2Q9Y4G8 1499 aa39.94■■■■□ 3.98
VARS-217ENST00000440048 TRHP20396 242 aaPredicted RBP39.81■■■■□ 3.96
VARS-217ENST00000440048 IQGAP2Q13576 1575 aa39.77■■■■□ 3.96
VARS-217ENST00000440048 PRXQ9BXM0 1461 aa39.76■■■■□ 3.96
VARS-217ENST00000440048 CHIC1Q5VXU3 224 aa39.76■■■■□ 3.96
VARS-217ENST00000440048 CSRNP3Q8WYN3 585 aa39.68■■■■□ 3.94
VARS-217ENST00000440048 EEA1Q15075 1411 aa39.66■■■■□ 3.94
VARS-217ENST00000440048 CTTNBP2Q8WZ74 1663 aa39.6■■■■□ 3.93
VARS-217ENST00000440048 CARMIL2Q6F5E8 1435 aa39.58■■■■□ 3.93
VARS-217ENST00000440048 UGGT2Q9NYU1 1516 aa39.55■■■■□ 3.92
VARS-217ENST00000440048 FAM9AQ8IZU1 332 aaPredicted RBP39.52■■■■□ 3.92
VARS-217ENST00000440048 DISP1Q96F81 1524 aa39.51■■■■□ 3.92
VARS-217ENST00000440048 TNIKQ9UKE5 1360 aa39.48■■■■□ 3.91
VARS-217ENST00000440048 PTPRGP23470 1445 aa39.48■■■■□ 3.91
VARS-217ENST00000440048 ADCY10Q96PN6 1610 aa39.43■■■■□ 3.9
VARS-217ENST00000440048 TTBK1Q5TCY1 1321 aaPredicted RBP39.41■■■■□ 3.9
VARS-217ENST00000440048 KIAA0556O60303 1618 aa39.4■■■■□ 3.9
VARS-217ENST00000440048 KIF21BO75037 1637 aa39.3■■■■□ 3.88
VARS-217ENST00000440048 NPM1P06748 294 aaKnown RBP eCLIP39.3■■■■□ 3.88
VARS-217ENST00000440048 GOLGA3Q08378 1498 aa39.3■■■■□ 3.88
VARS-217ENST00000440048 UACAQ9BZF9 1416 aa39.21■■■■□ 3.87
VARS-217ENST00000440048 MAPKBP1O60336 1514 aa39.19■■■■□ 3.86
VARS-217ENST00000440048 UHRF1BP1LA0JNW5 1464 aa39.18■■■■□ 3.86
VARS-217ENST00000440048 ABCC2Q92887 1545 aa39.15■■■■□ 3.86
VARS-217ENST00000440048 KIF13AQ9H1H9 1805 aa39.11■■■■□ 3.85
VARS-217ENST00000440048 SAMD9Q5K651 1589 aa39.08■■■■□ 3.85
VARS-217ENST00000440048 P3H3Q8IVL6 736 aa39.06■■■■□ 3.84
VARS-217ENST00000440048 EHMT2Q96KQ7 1210 aa39.04■■■■□ 3.84
VARS-217ENST00000440048 ABCC10Q5T3U5 1492 aa39.04■■■■□ 3.84
VARS-217ENST00000440048 PLB1Q6P1J6 1458 aa39.04■■■■□ 3.84
VARS-217ENST00000440048 KDM5BQ9UGL1 1544 aa39■■■■□ 3.83
VARS-217ENST00000440048 RANGAP1P46060 587 aaPredicted RBP39■■■■□ 3.83
VARS-217ENST00000440048 ABCA8O94911 1581 aa38.99■■■■□ 3.83
VARS-217ENST00000440048 DIP2BQ9P265 1576 aa38.98■■■■□ 3.83
VARS-217ENST00000440048 UBTFP17480 764 aaKnown RBP38.97■■■■□ 3.83
VARS-217ENST00000440048 FAM69CQ0P6D2 419 aa38.97■■■■□ 3.83
VARS-217ENST00000440048 ZCCHC11Q5TAX3 1644 aaKnown RBP38.94■■■■□ 3.82
VARS-217ENST00000440048 ASXL2Q76L83 1435 aa38.93■■■■□ 3.82
VARS-217ENST00000440048 EFCAB5A4FU69 1503 aa38.84■■■■□ 3.81
VARS-217ENST00000440048 FHOD3Q2V2M9 1422 aa38.84■■■■□ 3.81
VARS-217ENST00000440048 RAPGEF6Q8TEU7 1601 aa38.74■■■■□ 3.79
VARS-217ENST00000440048 GLI2P10070 1586 aa38.73■■■■□ 3.79
VARS-217ENST00000440048 TSPOAP1O95153 1857 aa38.71■■■■□ 3.79
VARS-217ENST00000440048 EPRSP07814 1512 aaKnown RBP38.7■■■■□ 3.79
VARS-217ENST00000440048 WDR7Q9Y4E6 1490 aa38.69■■■■□ 3.78
VARS-217ENST00000440048 ATP10BO94823 1461 aa38.67■■■■□ 3.78
VARS-217ENST00000440048 ARID3CA6NKF2 412 aa38.67■■■■□ 3.78
VARS-217ENST00000440048 ARHGAP35Q9NRY4 1499 aa38.64■■■■□ 3.78
VARS-217ENST00000440048 NUP153P49790 1475 aaKnown RBP38.6■■■■□ 3.77
VARS-217ENST00000440048 MAP3K4Q9Y6R4 1608 aa38.55■■■■□ 3.76
VARS-217ENST00000440048 PPRC1Q5VV67 1664 aaKnown RBP38.54■■■■□ 3.76
VARS-217ENST00000440048 KCNH8Q96L42 1107 aa38.53■■■■□ 3.76
VARS-217ENST00000440048 FMN1Q68DA7 1419 aa38.48■■■■□ 3.75
VARS-217ENST00000440048 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP38.47■■■■□ 3.75
VARS-217ENST00000440048 HNRNPUL2Q1KMD3 747 aaKnown RBP38.47■■■■□ 3.75
VARS-217ENST00000440048 KDM6BO15054 1643 aa38.45■■■■□ 3.75
VARS-217ENST00000440048 CFAP43Q8NDM7 1665 aa38.41■■■■□ 3.74
VARS-217ENST00000440048 CD109Q6YHK3 1445 aa38.37■■■■□ 3.73
VARS-217ENST00000440048 TEX14Q8IWB6 1497 aa38.35■■■■□ 3.73
VARS-217ENST00000440048 HECW1Q76N89 1606 aa38.34■■■■□ 3.73
VARS-217ENST00000440048 CLIP1P30622 1438 aa38.33■■■■□ 3.73
VARS-217ENST00000440048 CDK13Q14004 1512 aaKnown RBP38.32■■■■□ 3.72
VARS-217ENST00000440048 ATP1B4Q9UN42 357 aaPredicted RBP38.31■■■■□ 3.72
VARS-217ENST00000440048 MAGI3Q5TCQ9 1506 aa38.3■■■■□ 3.72
VARS-217ENST00000440048 PLEKHD1A6NEE1 506 aa38.3■■■■□ 3.72
VARS-217ENST00000440048 AEBP2Q6ZN18 517 aaPredicted RBP38.3■■■■□ 3.72
VARS-217ENST00000440048 ABCA9Q8IUA7 1624 aa38.28■■■■□ 3.72
VARS-217ENST00000440048 COL17A1Q9UMD9 1497 aaPredicted RBP38.19■■■■□ 3.7
VARS-217ENST00000440048 PCF11O94913 1555 aaKnown RBP38.19■■■■□ 3.7
VARS-217ENST00000440048 CASKIN1Q8WXD9 1431 aa38.18■■■■□ 3.7
VARS-217ENST00000440048 LRRIQ1Q96JM4 1722 aa38.18■■■■□ 3.7
VARS-217ENST00000440048 LOC105371045A0A1W2PR82 267 aa38.15■■■■□ 3.7
VARS-217ENST00000440048 CEP162Q5TB80 1403 aa38.12■■■■□ 3.69
VARS-217ENST00000440048 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP38.08■■■■□ 3.699e-7■□□□□ 9.9
VARS-217ENST00000440048 CDK11AQ9UQ88 783 aaPredicted RBP38.08■■■■□ 3.69
VARS-217ENST00000440048 FYCO1Q9BQS8 1478 aa38.07■■■■□ 3.68
VARS-217ENST00000440048 CCDC18Q5T9S5 1454 aa38.03■■■■□ 3.68
VARS-217ENST00000440048 TTC37Q6PGP7 1564 aa38.03■■■■□ 3.68
VARS-217ENST00000440048 TROQ12816 1431 aaPredicted RBP37.99■■■■□ 3.67
VARS-217ENST00000440048 ARAP3Q8WWN8 1544 aa37.97■■■■□ 3.67
VARS-217ENST00000440048 NEO1Q92859 1461 aa37.97■■■■□ 3.67
VARS-217ENST00000440048 PHLDB1Q86UU1 1377 aa37.97■■■■□ 3.67
VARS-217ENST00000440048 KIF14Q15058 1648 aa37.94■■■■□ 3.66
VARS-217ENST00000440048 FANCAO15360 1455 aa37.87■■■■□ 3.65
VARS-217ENST00000440048 CFAP74Q9C0B2 1584 aa37.85■■■■□ 3.65
VARS-217ENST00000440048 PLCH2O75038 1416 aa37.85■■■■□ 3.65
VARS-217ENST00000440048 MYO5CQ9NQX4 1742 aa37.83■■■■□ 3.65
VARS-217ENST00000440048 AKNAQ7Z591 1439 aa37.82■■■■□ 3.64
VARS-217ENST00000440048 KDM4FA0A1W2PPD8 638 aa37.81■■■■□ 3.64
VARS-217ENST00000440048 RAPGEF3O95398 923 aa37.78■■■■□ 3.64
VARS-217ENST00000440048 FRMPD1Q5SYB0 1578 aa37.73■■■■□ 3.63
VARS-217ENST00000440048 DENND4BO75064 1496 aaPredicted RBP37.71■■■■□ 3.63
VARS-217ENST00000440048 EFCAB2Q5VUJ9 269 aa37.7■■■■□ 3.63
VARS-217ENST00000440048 RICTORQ6R327 1708 aa37.68■■■■□ 3.62
VARS-217ENST00000440048 VPS8Q8N3P4 1428 aa37.67■■■■□ 3.62
VARS-217ENST00000440048 ARHGAP5Q13017 1502 aa37.66■■■■□ 3.62
VARS-217ENST00000440048 ADGRL1O94910 1474 aa37.66■■■■□ 3.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms