RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 OSCARQ8IYS5 282 aa13.28□□□□□ -0.28
HPS4-206ENST00000439453 TRIM41Q8WV44 630 aa13.24□□□□□ -0.29
HPS4-206ENST00000439453 ARHGEF11O15085 1522 aa13.23□□□□□ -0.29
HPS4-206ENST00000439453 ACIN1Q9UKV3 1341 aaKnown RBP13.22□□□□□ -0.29
HPS4-206ENST00000439453 CHMP7Q8WUX9 453 aaPredicted RBP13.21□□□□□ -0.29
HPS4-206ENST00000439453 ERCC6L2Q5T890 1561 aa13.21□□□□□ -0.29
HPS4-206ENST00000439453 FBLN2P98095 1184 aa13.21□□□□□ -0.3
HPS4-206ENST00000439453 PRXQ9BXM0 1461 aa13.2□□□□□ -0.3
HPS4-206ENST00000439453 MYT1Q01538 1121 aa13.19□□□□□ -0.3
HPS4-206ENST00000439453 CTTNBP2Q8WZ74 1663 aa13.19□□□□□ -0.3
HPS4-206ENST00000439453 CARMIL1Q5VZK9 1371 aa13.18□□□□□ -0.3
HPS4-206ENST00000439453 NEUROD1Q13562 356 aa13.16□□□□□ -0.3
HPS4-206ENST00000439453 ARAP1Q96P48 1450 aa13.16□□□□□ -0.3
HPS4-206ENST00000439453 RAPGEF2Q9Y4G8 1499 aa13.16□□□□□ -0.3
HPS4-206ENST00000439453 FAM9AQ8IZU1 332 aaPredicted RBP13.15□□□□□ -0.3
HPS4-206ENST00000439453 KIAA0586Q9BVV6 1533 aa13.13□□□□□ -0.31
HPS4-206ENST00000439453 KIF21BO75037 1637 aa13.12□□□□□ -0.31
HPS4-206ENST00000439453 EEA1Q15075 1411 aa13.12□□□□□ -0.31
HPS4-206ENST00000439453 IQGAP2Q13576 1575 aa13.11□□□□□ -0.31
HPS4-206ENST00000439453 GTF3C3Q9Y5Q9 886 aa13.08□□□□□ -0.32
HPS4-206ENST00000439453 CENPBP07199 599 aaPredicted RBP13.07□□□□□ -0.32
HPS4-206ENST00000439453 UGGT2Q9NYU1 1516 aa13.06□□□□□ -0.32
HPS4-206ENST00000439453 EHMT2Q96KQ7 1210 aa13.05□□□□□ -0.32
HPS4-206ENST00000439453 DISP1Q96F81 1524 aa13.05□□□□□ -0.32
HPS4-206ENST00000439453 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.05□□□□□ -0.32
HPS4-206ENST00000439453 CSRNP3Q8WYN3 585 aa13.04□□□□□ -0.32
HPS4-206ENST00000439453 PRG4Q92954 1404 aaPredicted RBP13.04□□□□□ -0.32
HPS4-206ENST00000439453 CCER1Q8TC90 406 aaPredicted RBP13.04□□□□□ -0.32
HPS4-206ENST00000439453 KIAA0556O60303 1618 aa13.03□□□□□ -0.32
HPS4-206ENST00000439453 DIEXFQ68CQ4 756 aaKnown RBP13.03□□□□□ -0.32
HPS4-206ENST00000439453 JPH4Q96JJ6 628 aa13.01□□□□□ -0.33
HPS4-206ENST00000439453 SAMD9Q5K651 1589 aa13.01□□□□□ -0.33
HPS4-206ENST00000439453 ADCY10Q96PN6 1610 aa12.99□□□□□ -0.33
HPS4-206ENST00000439453 GOLGA3Q08378 1498 aa12.94□□□□□ -0.34
HPS4-206ENST00000439453 CYB5RLQ6IPT4 315 aa12.94□□□□□ -0.34
HPS4-206ENST00000439453 ABCA8O94911 1581 aa12.89□□□□□ -0.35
HPS4-206ENST00000439453 TNIKQ9UKE5 1360 aa12.89□□□□□ -0.35
HPS4-206ENST00000439453 CARMIL2Q6F5E8 1435 aa12.88□□□□□ -0.35
HPS4-206ENST00000439453 KIF13AQ9H1H9 1805 aa12.88□□□□□ -0.35
HPS4-206ENST00000439453 EFCAB5A4FU69 1503 aa12.86□□□□□ -0.35
HPS4-206ENST00000439453 UHRF1BP1LA0JNW5 1464 aa12.86□□□□□ -0.35
HPS4-206ENST00000439453 ABCC2Q92887 1545 aa12.86□□□□□ -0.35
HPS4-206ENST00000439453 ZCCHC11Q5TAX3 1644 aaKnown RBP12.85□□□□□ -0.35
HPS4-206ENST00000439453 PTPRGP23470 1445 aa12.84□□□□□ -0.35
HPS4-206ENST00000439453 LRRIQ1Q96JM4 1722 aa12.84□□□□□ -0.35
HPS4-206ENST00000439453 MAPKBP1O60336 1514 aa12.83□□□□□ -0.36
HPS4-206ENST00000439453 ARHGAP35Q9NRY4 1499 aa12.83□□□□□ -0.36
HPS4-206ENST00000439453 PLB1Q6P1J6 1458 aa12.83□□□□□ -0.36
HPS4-206ENST00000439453 RAPGEF6Q8TEU7 1601 aa12.81□□□□□ -0.36
HPS4-206ENST00000439453 ZNF316A6NFI3 1004 aaPredicted RBP12.81□□□□□ -0.36
HPS4-206ENST00000439453 UACAQ9BZF9 1416 aa12.81□□□□□ -0.36
HPS4-206ENST00000439453 KDM5BQ9UGL1 1544 aa12.81□□□□□ -0.36
HPS4-206ENST00000439453 FHOD3Q2V2M9 1422 aa12.8□□□□□ -0.36
HPS4-206ENST00000439453 DIP2BQ9P265 1576 aa12.79□□□□□ -0.36
HPS4-206ENST00000439453 YTHDC1Q96MU7 727 aaKnown RBP12.76□□□□□ -0.37
HPS4-206ENST00000439453 NUP153P49790 1475 aaKnown RBP12.75□□□□□ -0.37
HPS4-206ENST00000439453 TTBK1Q5TCY1 1321 aaPredicted RBP12.74□□□□□ -0.37
HPS4-206ENST00000439453 PPRC1Q5VV67 1664 aaKnown RBP12.74□□□□□ -0.37
HPS4-206ENST00000439453 P3H3Q8IVL6 736 aa12.74□□□□□ -0.37
HPS4-206ENST00000439453 UBTFP17480 764 aaKnown RBP12.73□□□□□ -0.37
HPS4-206ENST00000439453 PCF11O94913 1555 aaKnown RBP12.72□□□□□ -0.37
HPS4-206ENST00000439453 ABCC10Q5T3U5 1492 aa12.72□□□□□ -0.37
HPS4-206ENST00000439453 ATP10BO94823 1461 aa12.71□□□□□ -0.37
HPS4-206ENST00000439453 MAP3K4Q9Y6R4 1608 aa12.7□□□□□ -0.38
HPS4-206ENST00000439453 GLI2P10070 1586 aa12.7□□□□□ -0.38
HPS4-206ENST00000439453 ASXL2Q76L83 1435 aa12.7□□□□□ -0.38
HPS4-206ENST00000439453 MIER1Q8N108 512 aa12.69□□□□□ -0.38
HPS4-206ENST00000439453 RANGAP1P46060 587 aaPredicted RBP12.69□□□□□ -0.38
HPS4-206ENST00000439453 CEP162Q5TB80 1403 aa12.69□□□□□ -0.38
HPS4-206ENST00000439453 HECW1Q76N89 1606 aa12.69□□□□□ -0.38
HPS4-206ENST00000439453 CLIP1P30622 1438 aa12.68□□□□□ -0.38
HPS4-206ENST00000439453 EPRSP07814 1512 aaKnown RBP12.67□□□□□ -0.38
HPS4-206ENST00000439453 CDK13Q14004 1512 aaKnown RBP12.66□□□□□ -0.38
HPS4-206ENST00000439453 TSPOAP1O95153 1857 aa12.66□□□□□ -0.38
HPS4-206ENST00000439453 WDR7Q9Y4E6 1490 aa12.66□□□□□ -0.38
HPS4-206ENST00000439453 FMN1Q68DA7 1419 aa12.65□□□□□ -0.38
HPS4-206ENST00000439453 CFAP43Q8NDM7 1665 aa12.64□□□□□ -0.39
HPS4-206ENST00000439453 ABCA9Q8IUA7 1624 aa12.63□□□□□ -0.39
HPS4-206ENST00000439453 CASKIN1Q8WXD9 1431 aa12.62□□□□□ -0.39
HPS4-206ENST00000439453 MAGI3Q5TCQ9 1506 aa12.62□□□□□ -0.39
HPS4-206ENST00000439453 FYCO1Q9BQS8 1478 aa12.62□□□□□ -0.39
HPS4-206ENST00000439453 TTC37Q6PGP7 1564 aa12.59□□□□□ -0.39
HPS4-206ENST00000439453 KIF14Q15058 1648 aa12.59□□□□□ -0.39
HPS4-206ENST00000439453 NPM1P06748 294 aaKnown RBP eCLIP12.58□□□□□ -0.4
HPS4-206ENST00000439453 TRHP20396 242 aaPredicted RBP12.57□□□□□ -0.4
HPS4-206ENST00000439453 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.57□□□□□ -0.4
HPS4-206ENST00000439453 ARID3CA6NKF2 412 aa12.56□□□□□ -0.4
HPS4-206ENST00000439453 CCDC18Q5T9S5 1454 aa12.55□□□□□ -0.4
HPS4-206ENST00000439453 FAM69CQ0P6D2 419 aa12.55□□□□□ -0.4
HPS4-206ENST00000439453 MYO5CQ9NQX4 1742 aa12.52□□□□□ -0.41
HPS4-206ENST00000439453 CDC42BPBQ9Y5S2 1711 aa12.52□□□□□ -0.41
HPS4-206ENST00000439453 HNRNPUL2Q1KMD3 747 aaKnown RBP12.52□□□□□ -0.41
HPS4-206ENST00000439453 CLSPNQ9HAW4 1339 aa12.52□□□□□ -0.41
HPS4-206ENST00000439453 CDC42BPAQ5VT25 1732 aa12.52□□□□□ -0.41
HPS4-206ENST00000439453 VPS8Q8N3P4 1428 aa12.52□□□□□ -0.41
HPS4-206ENST00000439453 TIAM1Q13009 1591 aa12.5□□□□□ -0.41
HPS4-206ENST00000439453 TROQ12816 1431 aaPredicted RBP12.49□□□□□ -0.41
HPS4-206ENST00000439453 COL17A1Q9UMD9 1497 aaPredicted RBP12.49□□□□□ -0.41
HPS4-206ENST00000439453 KDM6BO15054 1643 aa12.49□□□□□ -0.41
HPS4-206ENST00000439453 PREX2Q70Z35 1606 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms