RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 NISCHQ9Y2I1 1504 aa19.1■□□□□ 0.65
HPS4-206ENST00000439453 CCDC180Q9P1Z9 1646 aa17.03■□□□□ 0.32
HPS4-206ENST00000439453 ABCC9O60706 1549 aa16.43■□□□□ 0.22
HPS4-206ENST00000439453 ZCCHC6Q5VYS8 1495 aaKnown RBP15.96■□□□□ 0.15
HPS4-206ENST00000439453 NACADO15069 1562 aa15.89■□□□□ 0.13
HPS4-206ENST00000439453 RB1CC1Q8TDY2 1594 aa15.88■□□□□ 0.13
HPS4-206ENST00000439453 MYO15BQ96JP2 1530 aa15.87■□□□□ 0.13
HPS4-206ENST00000439453 DCAF1Q9Y4B6 1507 aa15.84■□□□□ 0.13
HPS4-206ENST00000439453 UNC13AQ9UPW8 1703 aa15.76■□□□□ 0.11
HPS4-206ENST00000439453 DCAF8L2P0C7V8 631 aa15.61■□□□□ 0.09
HPS4-206ENST00000439453 BICRAQ9NZM4 1560 aa15.54■□□□□ 0.08
HPS4-206ENST00000439453 SCRIBQ14160 1630 aa15.48■□□□□ 0.07
HPS4-206ENST00000439453 PABPN1Q86U42 306 aaKnown RBP eCLIP15.29■□□□□ 0.04
HPS4-206ENST00000439453 SHROOM4Q9ULL8 1493 aa15.26■□□□□ 0.03
HPS4-206ENST00000439453 DNAJC5BQ9UF47 199 aa15.05■□□□□ -0
HPS4-206ENST00000439453 EIF4G1Q04637 1599 aaKnown RBP15.03■□□□□ -0
HPS4-206ENST00000439453 CC2D2AQ9P2K1 1620 aa14.96□□□□□ -0.01
HPS4-206ENST00000439453 CECR2Q9BXF3 1484 aa14.88□□□□□ -0.03
HPS4-206ENST00000439453 SMARCA4P51532 1647 aa14.85□□□□□ -0.03
HPS4-206ENST00000439453 BAZ1AQ9NRL2 1556 aaPredicted RBP14.77□□□□□ -0.05
HPS4-206ENST00000439453 MROH2BQ7Z745 1585 aa14.74□□□□□ -0.05
HPS4-206ENST00000439453 PEG3Q9GZU2 1588 aa14.73□□□□□ -0.05
HPS4-206ENST00000439453 ATAD2BQ9ULI0 1458 aa14.68□□□□□ -0.06
HPS4-206ENST00000439453 NCAPD3P42695 1498 aa14.65□□□□□ -0.06
HPS4-206ENST00000439453 SMARCA2P51531 1590 aa14.64□□□□□ -0.07
HPS4-206ENST00000439453 HMGXB3Q12766 1538 aa14.64□□□□□ -0.07
HPS4-206ENST00000439453 WIZO95785 1651 aa14.63□□□□□ -0.07
HPS4-206ENST00000439453 RSF1Q96T23 1441 aaPredicted RBP14.55□□□□□ -0.08
HPS4-206ENST00000439453 BAZ1BQ9UIG0 1483 aaKnown RBP14.51□□□□□ -0.09
HPS4-206ENST00000439453 TOP2AP11388 1531 aaKnown RBP14.43□□□□□ -0.1
HPS4-206ENST00000439453 HRCP23327 699 aa14.34□□□□□ -0.11
HPS4-206ENST00000439453 NESP48681 1621 aa14.31□□□□□ -0.12
HPS4-206ENST00000439453 LAMC3Q9Y6N6 1575 aa14.28□□□□□ -0.12
HPS4-206ENST00000439453 PRDM2Q13029 1718 aa14.25□□□□□ -0.13
HPS4-206ENST00000439453 KIF21AQ7Z4S6 1674 aa14.25□□□□□ -0.13
HPS4-206ENST00000439453 SUPT5HO00267 1087 aaKnown RBP14.23□□□□□ -0.13
HPS4-206ENST00000439453 CCDC88BA6NC98 1476 aa14.23□□□□□ -0.13
HPS4-206ENST00000439453 THOC2Q8NI27 1593 aaKnown RBP14.17□□□□□ -0.14
HPS4-206ENST00000439453 CFTRP13569 1480 aa14.17□□□□□ -0.14
HPS4-206ENST00000439453 CADPSQ9ULU8 1353 aa14.17□□□□□ -0.14
HPS4-206ENST00000439453 ERCC6Q03468 1493 aa14.07□□□□□ -0.16
HPS4-206ENST00000439453 PDS5BQ9NTI5 1447 aa14.05□□□□□ -0.16
HPS4-206ENST00000439453 PCGF6Q9BYE7 350 aa14.05□□□□□ -0.16
HPS4-206ENST00000439453 FANCD2Q9BXW9 1451 aa14.04□□□□□ -0.16
HPS4-206ENST00000439453 CHIC1Q5VXU3 224 aa14.03□□□□□ -0.16
HPS4-206ENST00000439453 WDR62O43379 1518 aa14.02□□□□□ -0.17
HPS4-206ENST00000439453 CEP164Q9UPV0 1460 aa14□□□□□ -0.17
HPS4-206ENST00000439453 PPARGC1BQ86YN6 1023 aaKnown RBP14□□□□□ -0.17
HPS4-206ENST00000439453 CUX2O14529 1486 aa13.99□□□□□ -0.17
HPS4-206ENST00000439453 MRC2Q9UBG0 1479 aa13.98□□□□□ -0.17
HPS4-206ENST00000439453 URB2Q14146 1524 aaKnown RBP13.97□□□□□ -0.17
HPS4-206ENST00000439453 DNMBPQ6XZF7 1577 aa13.87□□□□□ -0.19
HPS4-206ENST00000439453 TOPBP1Q92547 1522 aa13.86□□□□□ -0.19
HPS4-206ENST00000439453 CUX1P39880 1505 aa13.83□□□□□ -0.2
HPS4-206ENST00000439453 TARBP1Q13395 1621 aaKnown RBP13.8□□□□□ -0.2
HPS4-206ENST00000439453 BIVM-ERCC5R4GMW8 1640 aa13.78□□□□□ -0.2
HPS4-206ENST00000439453 ABCC8Q09428 1581 aa13.78□□□□□ -0.2
HPS4-206ENST00000439453 WDR97A6NE52 1622 aa13.78□□□□□ -0.2
HPS4-206ENST00000439453 SYNJ1O43426 1573 aa13.76□□□□□ -0.21
HPS4-206ENST00000439453 POLA1P09884 1462 aaPredicted RBP13.75□□□□□ -0.21
HPS4-206ENST00000439453 PELP1Q8IZL8 1130 aaKnown RBP13.74□□□□□ -0.21
HPS4-206ENST00000439453 TOP2BQ02880 1626 aa13.74□□□□□ -0.21
HPS4-206ENST00000439453 FGD5Q6ZNL6 1462 aa13.71□□□□□ -0.21
HPS4-206ENST00000439453 IFT140Q96RY7 1462 aa13.7□□□□□ -0.22
HPS4-206ENST00000439453 EIF4G3O43432 1585 aaKnown RBP13.7□□□□□ -0.22
HPS4-206ENST00000439453 ZNF608Q9ULD9 1512 aaPredicted RBP13.7□□□□□ -0.22
HPS4-206ENST00000439453 RAD54L2Q9Y4B4 1467 aa13.67□□□□□ -0.22
HPS4-206ENST00000439453 TRIM26Q12899 539 aaPredicted RBP13.66□□□□□ -0.22
HPS4-206ENST00000439453 LOC105371045A0A1W2PR82 267 aa13.66□□□□□ -0.22
HPS4-206ENST00000439453 WRNQ14191 1432 aaPredicted RBP eCLIP13.65□□□□□ -0.229e-6■■■■■ 50.1
HPS4-206ENST00000439453 ABCA5Q8WWZ7 1642 aa13.63□□□□□ -0.23
HPS4-206ENST00000439453 PBRM1Q86U86 1689 aa13.61□□□□□ -0.23
HPS4-206ENST00000439453 ABCA10Q8WWZ4 1543 aa13.6□□□□□ -0.23
HPS4-206ENST00000439453 SOGA1O94964 1423 aa13.6□□□□□ -0.23
HPS4-206ENST00000439453 AQRO60306 1485 aaKnown RBP eCLIP13.57□□□□□ -0.243e-8■■■■□ 23.8
HPS4-206ENST00000439453 CHD1O14646 1710 aa13.55□□□□□ -0.24
HPS4-206ENST00000439453 ZEB1P37275 1124 aaPredicted RBP13.55□□□□□ -0.24
HPS4-206ENST00000439453 TDRD9Q8NDG6 1382 aaKnown RBP13.52□□□□□ -0.25
HPS4-206ENST00000439453 SCAF1Q9H7N4 1312 aaKnown RBP13.5□□□□□ -0.25
HPS4-206ENST00000439453 GAPVD1Q14C86 1478 aa13.48□□□□□ -0.25
HPS4-206ENST00000439453 SNAPC4Q5SXM2 1469 aa13.47□□□□□ -0.25
HPS4-206ENST00000439453 GRIN2BQ13224 1484 aa13.46□□□□□ -0.25
HPS4-206ENST00000439453 ADAMTS12P58397 1594 aa13.46□□□□□ -0.25
HPS4-206ENST00000439453 MAGI1Q96QZ7 1491 aaPredicted RBP13.44□□□□□ -0.26
HPS4-206ENST00000439453 ERICH3Q5RHP9 1530 aa13.44□□□□□ -0.26
HPS4-206ENST00000439453 DNAJC5Q9H3Z4 198 aa13.39□□□□□ -0.27
HPS4-206ENST00000439453 SYNJ2O15056 1496 aa13.39□□□□□ -0.27
HPS4-206ENST00000439453 CLASP1Q7Z460 1538 aa13.38□□□□□ -0.27
HPS4-206ENST00000439453 RUSC2Q8N2Y8 1516 aa13.36□□□□□ -0.27
HPS4-206ENST00000439453 CUL7Q14999 1698 aa13.36□□□□□ -0.27
HPS4-206ENST00000439453 CEP170Q5SW79 1584 aa13.35□□□□□ -0.27
HPS4-206ENST00000439453 GRIN2AQ12879 1464 aa13.33□□□□□ -0.28
HPS4-206ENST00000439453 KIF27Q86VH2 1401 aa13.32□□□□□ -0.28
HPS4-206ENST00000439453 FHAD1B1AJZ9 1412 aa13.32□□□□□ -0.28
HPS4-206ENST00000439453 IGF1RP08069 1367 aa13.31□□□□□ -0.28
HPS4-206ENST00000439453 NUP160Q12769 1436 aa13.29□□□□□ -0.28
HPS4-206ENST00000439453 RIMBP3CA6NJZ7 1639 aa13.29□□□□□ -0.28
HPS4-206ENST00000439453 RIMBP3BA6NNM3 1639 aa13.29□□□□□ -0.28
HPS4-206ENST00000439453 RIMBP3Q9UFD9 1639 aa13.29□□□□□ -0.28
HPS4-206ENST00000439453 SHROOM2Q13796 1616 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms