RNA–Protein interactions for RNA: ENST00000433118.5

SMPD4-206, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 5

Gene SMPD4, Length 3,335 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-206ENST00000433118 ABCA10Q8WWZ4 1543 aa15.64■□□□□ 0.09
SMPD4-206ENST00000433118 ARHGAP35Q9NRY4 1499 aa15.62■□□□□ 0.09
SMPD4-206ENST00000433118 YTHDC1Q96MU7 727 aaKnown RBP15.6■□□□□ 0.09
SMPD4-206ENST00000433118 GAPVD1Q14C86 1478 aa15.56■□□□□ 0.08
SMPD4-206ENST00000433118 AQRO60306 1485 aaKnown RBP eCLIP15.56■□□□□ 0.087e-7■■■■□ 21.1
SMPD4-206ENST00000433118 MIER1Q8N108 512 aa15.54■□□□□ 0.08
SMPD4-206ENST00000433118 ERCC6Q03468 1493 aa15.53■□□□□ 0.08
SMPD4-206ENST00000433118 ITGAEP38570 1179 aa15.52■□□□□ 0.08
SMPD4-206ENST00000433118 FHOD3Q2V2M9 1422 aa15.51■□□□□ 0.07
SMPD4-206ENST00000433118 MRC2Q9UBG0 1479 aa15.51■□□□□ 0.07
SMPD4-206ENST00000433118 ZNF608Q9ULD9 1512 aaPredicted RBP15.47■□□□□ 0.07
SMPD4-206ENST00000433118 WDR97A6NE52 1622 aa15.45■□□□□ 0.06
SMPD4-206ENST00000433118 ABCA5Q8WWZ7 1642 aa15.45■□□□□ 0.06
SMPD4-206ENST00000433118 TARBP1Q13395 1621 aaKnown RBP15.44■□□□□ 0.06
SMPD4-206ENST00000433118 FBLN2P98095 1184 aa15.43■□□□□ 0.06
SMPD4-206ENST00000433118 ARID3CA6NKF2 412 aa15.43■□□□□ 0.06
SMPD4-206ENST00000433118 CUL7Q14999 1698 aa15.43■□□□□ 0.06
SMPD4-206ENST00000433118 DHX57Q6P158 1386 aaKnown RBP15.42■□□□□ 0.06
SMPD4-206ENST00000433118 CLSPNQ9HAW4 1339 aa15.41■□□□□ 0.06
SMPD4-206ENST00000433118 FAM50AQ14320 339 aaKnown RBP15.36■□□□□ 0.05
SMPD4-206ENST00000433118 FHAD1B1AJZ9 1412 aa15.36■□□□□ 0.05
SMPD4-206ENST00000433118 RRBP1Q9P2E9 1410 aaKnown RBP15.35■□□□□ 0.05
SMPD4-206ENST00000433118 PCF11O94913 1555 aaKnown RBP15.34■□□□□ 0.05
SMPD4-206ENST00000433118 WDR62O43379 1518 aa15.34■□□□□ 0.05
SMPD4-206ENST00000433118 IFT140Q96RY7 1462 aa15.34■□□□□ 0.05
SMPD4-206ENST00000433118 GRIN2BQ13224 1484 aa15.33■□□□□ 0.05
SMPD4-206ENST00000433118 CTTNBP2Q8WZ74 1663 aa15.33■□□□□ 0.04
SMPD4-206ENST00000433118 CCNB3Q8WWL7 1395 aa15.31■□□□□ 0.04
SMPD4-206ENST00000433118 PBRM1Q86U86 1689 aa15.31■□□□□ 0.04
SMPD4-206ENST00000433118 CHMP7Q8WUX9 453 aaPredicted RBP15.31■□□□□ 0.04
SMPD4-206ENST00000433118 TIAM1Q13009 1591 aa15.31■□□□□ 0.04
SMPD4-206ENST00000433118 PHLDB1Q86UU1 1377 aa15.3■□□□□ 0.04
SMPD4-206ENST00000433118 SNAPC4Q5SXM2 1469 aa15.3■□□□□ 0.04
SMPD4-206ENST00000433118 LRRC9Q6ZRR7 1453 aa15.3■□□□□ 0.04
SMPD4-206ENST00000433118 EFCAB5A4FU69 1503 aa15.27■□□□□ 0.04
SMPD4-206ENST00000433118 FMN1Q68DA7 1419 aa15.26■□□□□ 0.03
SMPD4-206ENST00000433118 ADAMTS12P58397 1594 aa15.26■□□□□ 0.03
SMPD4-206ENST00000433118 CASKIN1Q8WXD9 1431 aa15.25■□□□□ 0.03
SMPD4-206ENST00000433118 THOC2Q8NI27 1593 aaKnown RBP15.25■□□□□ 0.03
SMPD4-206ENST00000433118 MTUS2Q5JR59 1369 aa15.25■□□□□ 0.03
SMPD4-206ENST00000433118 EIF4G3O43432 1585 aaKnown RBP15.24■□□□□ 0.03
SMPD4-206ENST00000433118 FYCO1Q9BQS8 1478 aa15.23■□□□□ 0.03
SMPD4-206ENST00000433118 IQGAP2Q13576 1575 aa15.2■□□□□ 0.02
SMPD4-206ENST00000433118 RAB3GAP2Q9H2M9 1393 aa15.2■□□□□ 0.02
SMPD4-206ENST00000433118 SAMD9Q5K651 1589 aa15.19■□□□□ 0.02
SMPD4-206ENST00000433118 GRIN2AQ12879 1464 aa15.17■□□□□ 0.02
SMPD4-206ENST00000433118 MAP3K1Q13233 1512 aa15.17■□□□□ 0.02
SMPD4-206ENST00000433118 CFAP43Q8NDM7 1665 aa15.15■□□□□ 0.02
SMPD4-206ENST00000433118 MAPKBP1O60336 1514 aa15.13■□□□□ 0.01
SMPD4-206ENST00000433118 SETD5Q9C0A6 1442 aa15.12■□□□□ 0.01
SMPD4-206ENST00000433118 KIAA0586Q9BVV6 1533 aa15.12■□□□□ 0.01
SMPD4-206ENST00000433118 JPH4Q96JJ6 628 aa15.12■□□□□ 0.01
SMPD4-206ENST00000433118 CDK13Q14004 1512 aaKnown RBP15.12■□□□□ 0.01
SMPD4-206ENST00000433118 LRRIQ1Q96JM4 1722 aa15.11■□□□□ 0.01
SMPD4-206ENST00000433118 SYNJ2O15056 1496 aa15.1■□□□□ 0.01
SMPD4-206ENST00000433118 MAGI1Q96QZ7 1491 aaPredicted RBP15.1■□□□□ 0.01
SMPD4-206ENST00000433118 CHIC2Q9UKJ5 165 aa15.09■□□□□ 0.01
SMPD4-206ENST00000433118 DISP1Q96F81 1524 aa15.08■□□□□ 0.01
SMPD4-206ENST00000433118 NCOA2Q15596 1464 aa15.08■□□□□ 0
SMPD4-206ENST00000433118 MYT1Q01538 1121 aa15.08■□□□□ 0
SMPD4-206ENST00000433118 SUPT16HQ9Y5B9 1047 aaKnown RBP15.08■□□□□ 0
SMPD4-206ENST00000433118 CEP170Q5SW79 1584 aa15.07■□□□□ 0
SMPD4-206ENST00000433118 MAGI3Q5TCQ9 1506 aa15.07■□□□□ 0
SMPD4-206ENST00000433118 FGD6Q6ZV73 1430 aa15.07■□□□□ 0
SMPD4-206ENST00000433118 EPRSP07814 1512 aaKnown RBP15.06■□□□□ 0
SMPD4-206ENST00000433118 UGGT2Q9NYU1 1516 aa15.06■□□□□ 0
SMPD4-206ENST00000433118 SIN3AQ96ST3 1273 aa15.05■□□□□ 0
SMPD4-206ENST00000433118 RRP7BPQ9NSQ0 103 aa15.03■□□□□ -0
SMPD4-206ENST00000433118 KIAA0556O60303 1618 aa15.03■□□□□ -0
SMPD4-206ENST00000433118 PLB1Q6P1J6 1458 aa15.03■□□□□ -0
SMPD4-206ENST00000433118 KCNH8Q96L42 1107 aa15.02■□□□□ -0
SMPD4-206ENST00000433118 MYOM3Q5VTT5 1437 aa15.01□□□□□ -0.01
SMPD4-206ENST00000433118 HECW1Q76N89 1606 aa15.01□□□□□ -0.01
SMPD4-206ENST00000433118 PTPRKQ15262 1439 aa15.01□□□□□ -0.01
SMPD4-206ENST00000433118 DDX10Q13206 875 aaKnown RBP15□□□□□ -0.01
SMPD4-206ENST00000433118 CCDC18Q5T9S5 1454 aa15□□□□□ -0.01
SMPD4-206ENST00000433118 ZNF644Q9H582 1327 aaPredicted RBP14.99□□□□□ -0.01
SMPD4-206ENST00000433118 EHBP1L1Q8N3D4 1523 aa14.99□□□□□ -0.01
SMPD4-206ENST00000433118 ZNF777Q9ULD5 760 aaPredicted RBP14.99□□□□□ -0.01
SMPD4-206ENST00000433118 NUP160Q12769 1436 aa14.98□□□□□ -0.01
SMPD4-206ENST00000433118 NUP153P49790 1475 aaKnown RBP14.98□□□□□ -0.01
SMPD4-206ENST00000433118 SUPT6HQ7KZ85 1726 aaKnown RBP14.98□□□□□ -0.01
SMPD4-206ENST00000433118 CARMIL2Q6F5E8 1435 aa14.98□□□□□ -0.01
SMPD4-206ENST00000433118 CDK11AQ9UQ88 783 aaPredicted RBP14.96□□□□□ -0.01
SMPD4-206ENST00000433118 PRG4Q92954 1404 aaPredicted RBP14.96□□□□□ -0.01
SMPD4-206ENST00000433118 TIMELESSQ9UNS1 1208 aa14.94□□□□□ -0.02
SMPD4-206ENST00000433118 HIRIP3Q9BW71 556 aaPredicted RBP14.94□□□□□ -0.02
SMPD4-206ENST00000433118 RAPGEF6Q8TEU7 1601 aa14.92□□□□□ -0.02
SMPD4-206ENST00000433118 TRIM52Q96A61 297 aa14.92□□□□□ -0.02
SMPD4-206ENST00000433118 PTPN23Q9H3S7 1636 aa14.91□□□□□ -0.02
SMPD4-206ENST00000433118 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.91□□□□□ -0.024e-10■■■■■ 33.4
SMPD4-206ENST00000433118 PPP1R15AO75807 674 aaPredicted RBP14.91□□□□□ -0.02
SMPD4-206ENST00000433118 CFDP1Q9UEE9 299 aaPredicted RBP14.89□□□□□ -0.03
SMPD4-206ENST00000433118 PLEKHD1A6NEE1 506 aa14.89□□□□□ -0.03
SMPD4-206ENST00000433118 TONSLQ96HA7 1378 aa14.88□□□□□ -0.03
SMPD4-206ENST00000433118 PTPRGP23470 1445 aa14.88□□□□□ -0.03
SMPD4-206ENST00000433118 ARHGEF11O15085 1522 aa14.87□□□□□ -0.03
SMPD4-206ENST00000433118 CHD1O14646 1710 aa14.87□□□□□ -0.03
SMPD4-206ENST00000433118 NAIPQ13075 1403 aa14.86□□□□□ -0.03
SMPD4-206ENST00000433118 ANP32CO43423 234 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms