RNA–Protein interactions for RNA: ENST00000433118.5

SMPD4-206, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 5

Gene SMPD4, Length 3,335 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-206ENST00000433118 NISCHQ9Y2I1 1504 aa22.18■■□□□ 1.14
SMPD4-206ENST00000433118 CCDC180Q9P1Z9 1646 aa18.94■□□□□ 0.62
SMPD4-206ENST00000433118 DCAF8L2P0C7V8 631 aa18.89■□□□□ 0.61
SMPD4-206ENST00000433118 SHROOM4Q9ULL8 1493 aa18.86■□□□□ 0.61
SMPD4-206ENST00000433118 ZCCHC6Q5VYS8 1495 aaKnown RBP18.64■□□□□ 0.57
SMPD4-206ENST00000433118 SUPT5HO00267 1087 aaKnown RBP18.29■□□□□ 0.52
SMPD4-206ENST00000433118 ABCC9O60706 1549 aa18.22■□□□□ 0.51
SMPD4-206ENST00000433118 DCAF1Q9Y4B6 1507 aa18.07■□□□□ 0.48
SMPD4-206ENST00000433118 SCRIBQ14160 1630 aa17.88■□□□□ 0.45
SMPD4-206ENST00000433118 MYO15BQ96JP2 1530 aa17.69■□□□□ 0.42
SMPD4-206ENST00000433118 NACADO15069 1562 aa17.68■□□□□ 0.42
SMPD4-206ENST00000433118 CHIC1Q5VXU3 224 aa17.61■□□□□ 0.41
SMPD4-206ENST00000433118 RB1CC1Q8TDY2 1594 aa17.53■□□□□ 0.4
SMPD4-206ENST00000433118 CECR2Q9BXF3 1484 aa17.43■□□□□ 0.38
SMPD4-206ENST00000433118 RSF1Q96T23 1441 aaPredicted RBP17.43■□□□□ 0.38
SMPD4-206ENST00000433118 PABPN1Q86U42 306 aaKnown RBP eCLIP17.42■□□□□ 0.382e-6■■□□□ 12.8
SMPD4-206ENST00000433118 HRCP23327 699 aa17.31■□□□□ 0.36
SMPD4-206ENST00000433118 MROH2BQ7Z745 1585 aa17.27■□□□□ 0.36
SMPD4-206ENST00000433118 PCGF6Q9BYE7 350 aa17.26■□□□□ 0.35
SMPD4-206ENST00000433118 UNC13AQ9UPW8 1703 aa17.22■□□□□ 0.35
SMPD4-206ENST00000433118 WIZO95785 1651 aa17.15■□□□□ 0.34
SMPD4-206ENST00000433118 LOC105371045A0A1W2PR82 267 aa17.13■□□□□ 0.33
SMPD4-206ENST00000433118 BICRAQ9NZM4 1560 aa17.06■□□□□ 0.32
SMPD4-206ENST00000433118 BAZ1AQ9NRL2 1556 aaPredicted RBP17.05■□□□□ 0.32
SMPD4-206ENST00000433118 TRIM41Q8WV44 630 aa16.99■□□□□ 0.31
SMPD4-206ENST00000433118 FAM9AQ8IZU1 332 aaPredicted RBP16.97■□□□□ 0.31
SMPD4-206ENST00000433118 SMARCA4P51532 1647 aa16.97■□□□□ 0.31
SMPD4-206ENST00000433118 PPARGC1BQ86YN6 1023 aaKnown RBP16.96■□□□□ 0.31
SMPD4-206ENST00000433118 EHMT2Q96KQ7 1210 aa16.95■□□□□ 0.3
SMPD4-206ENST00000433118 TRIM26Q12899 539 aaPredicted RBP16.87■□□□□ 0.29
SMPD4-206ENST00000433118 TOP2AP11388 1531 aaKnown RBP16.81■□□□□ 0.28
SMPD4-206ENST00000433118 CCDC88BA6NC98 1476 aa16.81■□□□□ 0.28
SMPD4-206ENST00000433118 SMARCA2P51531 1590 aa16.72■□□□□ 0.27
SMPD4-206ENST00000433118 ATAD2BQ9ULI0 1458 aa16.69■□□□□ 0.26
SMPD4-206ENST00000433118 ABCC8Q09428 1581 aa16.66■□□□□ 0.26
SMPD4-206ENST00000433118 BAZ1BQ9UIG0 1483 aaKnown RBP16.65■□□□□ 0.26
SMPD4-206ENST00000433118 EIF4G1Q04637 1599 aaKnown RBP16.58■□□□□ 0.24
SMPD4-206ENST00000433118 PEG3Q9GZU2 1588 aa16.58■□□□□ 0.24
SMPD4-206ENST00000433118 ZEB1P37275 1124 aaPredicted RBP16.56■□□□□ 0.24
SMPD4-206ENST00000433118 SOGA1O94964 1423 aa16.43■□□□□ 0.22
SMPD4-206ENST00000433118 WRNQ14191 1432 aaPredicted RBP eCLIP16.41■□□□□ 0.225e-6■■■■■ 34.5
SMPD4-206ENST00000433118 NCAPD3P42695 1498 aa16.4■□□□□ 0.22
SMPD4-206ENST00000433118 RUSC2Q8N2Y8 1516 aa16.38■□□□□ 0.21
SMPD4-206ENST00000433118 HMGXB3Q12766 1538 aa16.31■□□□□ 0.2
SMPD4-206ENST00000433118 UBTFP17480 764 aaKnown RBP16.3■□□□□ 0.2
SMPD4-206ENST00000433118 CSRNP3Q8WYN3 585 aa16.3■□□□□ 0.2
SMPD4-206ENST00000433118 SYNJ1O43426 1573 aa16.3■□□□□ 0.2
SMPD4-206ENST00000433118 CC2D2AQ9P2K1 1620 aa16.29■□□□□ 0.2
SMPD4-206ENST00000433118 TTBK1Q5TCY1 1321 aaPredicted RBP16.25■□□□□ 0.19
SMPD4-206ENST00000433118 RANGAP1P46060 587 aaPredicted RBP16.25■□□□□ 0.19
SMPD4-206ENST00000433118 DNAJC5BQ9UF47 199 aa16.22■□□□□ 0.19
SMPD4-206ENST00000433118 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.2■□□□□ 0.18
SMPD4-206ENST00000433118 CCER1Q8TC90 406 aaPredicted RBP16.19■□□□□ 0.18
SMPD4-206ENST00000433118 CFTRP13569 1480 aa16.16■□□□□ 0.18
SMPD4-206ENST00000433118 CADPSQ9ULU8 1353 aa16.13■□□□□ 0.17
SMPD4-206ENST00000433118 EEA1Q15075 1411 aa16.12■□□□□ 0.17
SMPD4-206ENST00000433118 CEP162Q5TB80 1403 aa16.11■□□□□ 0.17
SMPD4-206ENST00000433118 CUX1P39880 1505 aa16.09■□□□□ 0.17
SMPD4-206ENST00000433118 TOP2BQ02880 1626 aa16.08■□□□□ 0.16
SMPD4-206ENST00000433118 NESP48681 1621 aa16.07■□□□□ 0.16
SMPD4-206ENST00000433118 TNIKQ9UKE5 1360 aa16.06■□□□□ 0.16
SMPD4-206ENST00000433118 GOLGA3Q08378 1498 aa16.05■□□□□ 0.16
SMPD4-206ENST00000433118 SCAF1Q9H7N4 1312 aaKnown RBP16.04■□□□□ 0.16
SMPD4-206ENST00000433118 RAPGEF2Q9Y4G8 1499 aa16.03■□□□□ 0.16
SMPD4-206ENST00000433118 CEP164Q9UPV0 1460 aa16■□□□□ 0.15
SMPD4-206ENST00000433118 BIVM-ERCC5R4GMW8 1640 aa15.99■□□□□ 0.15
SMPD4-206ENST00000433118 FANCD2Q9BXW9 1451 aa15.97■□□□□ 0.15
SMPD4-206ENST00000433118 KIF27Q86VH2 1401 aa15.93■□□□□ 0.14
SMPD4-206ENST00000433118 DIEXFQ68CQ4 756 aaKnown RBP15.92■□□□□ 0.14
SMPD4-206ENST00000433118 CUX2O14529 1486 aa15.92■□□□□ 0.14
SMPD4-206ENST00000433118 CLIP1P30622 1438 aa15.92■□□□□ 0.14
SMPD4-206ENST00000433118 FGD5Q6ZNL6 1462 aa15.91■□□□□ 0.14
SMPD4-206ENST00000433118 KIF21BO75037 1637 aa15.89■□□□□ 0.14
SMPD4-206ENST00000433118 PELP1Q8IZL8 1130 aaKnown RBP15.87■□□□□ 0.13
SMPD4-206ENST00000433118 RAD54L2Q9Y4B4 1467 aa15.86■□□□□ 0.13
SMPD4-206ENST00000433118 PRDM2Q13029 1718 aa15.86■□□□□ 0.13
SMPD4-206ENST00000433118 ACIN1Q9UKV3 1341 aaKnown RBP15.86■□□□□ 0.13
SMPD4-206ENST00000433118 PRXQ9BXM0 1461 aa15.84■□□□□ 0.13
SMPD4-206ENST00000433118 NEUROD1Q13562 356 aa15.83■□□□□ 0.12
SMPD4-206ENST00000433118 IGF1RP08069 1367 aa15.82■□□□□ 0.12
SMPD4-206ENST00000433118 APLP2Q06481 763 aa15.81■□□□□ 0.12
SMPD4-206ENST00000433118 TOPBP1Q92547 1522 aa15.8■□□□□ 0.12
SMPD4-206ENST00000433118 CENPBP07199 599 aaPredicted RBP15.79■□□□□ 0.12
SMPD4-206ENST00000433118 POLA1P09884 1462 aaPredicted RBP15.77■□□□□ 0.12
SMPD4-206ENST00000433118 HNRNPUL2Q1KMD3 747 aaKnown RBP15.77■□□□□ 0.12
SMPD4-206ENST00000433118 CARMIL1Q5VZK9 1371 aa15.77■□□□□ 0.11
SMPD4-206ENST00000433118 PDS5BQ9NTI5 1447 aa15.75■□□□□ 0.11
SMPD4-206ENST00000433118 P3H3Q8IVL6 736 aa15.75■□□□□ 0.11
SMPD4-206ENST00000433118 URB2Q14146 1524 aaKnown RBP15.75■□□□□ 0.11
SMPD4-206ENST00000433118 TDRD9Q8NDG6 1382 aaKnown RBP15.75■□□□□ 0.11
SMPD4-206ENST00000433118 LAMC3Q9Y6N6 1575 aa15.75■□□□□ 0.11
SMPD4-206ENST00000433118 ZNF316A6NFI3 1004 aaPredicted RBP15.74■□□□□ 0.11
SMPD4-206ENST00000433118 DNMBPQ6XZF7 1577 aa15.74■□□□□ 0.11
SMPD4-206ENST00000433118 VPS8Q8N3P4 1428 aa15.73■□□□□ 0.11
SMPD4-206ENST00000433118 ERICH3Q5RHP9 1530 aa15.73■□□□□ 0.11
SMPD4-206ENST00000433118 GTF3C3Q9Y5Q9 886 aa15.7■□□□□ 0.1
SMPD4-206ENST00000433118 ATP1B4Q9UN42 357 aaPredicted RBP15.68■□□□□ 0.1
SMPD4-206ENST00000433118 KIF21AQ7Z4S6 1674 aa15.68■□□□□ 0.1
SMPD4-206ENST00000433118 ARAP1Q96P48 1450 aa15.67■□□□□ 0.1
SMPD4-206ENST00000433118 KANK4Q5T7N3 995 aaPredicted RBP15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms