RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 CFDP1Q9UEE9 299 aaPredicted RBP15.03■□□□□ -0
TCOF1-204ENST00000427724 SLC24A1O60721 1099 aa15□□□□□ -0.01
TCOF1-204ENST00000427724 NEFLP07196 543 aa15□□□□□ -0.01
TCOF1-204ENST00000427724 JPH4Q96JJ6 628 aa14.99□□□□□ -0.01
TCOF1-204ENST00000427724 FANCD2Q9BXW9 1451 aa14.96□□□□□ -0.01
TCOF1-204ENST00000427724 RRP7BPQ9NSQ0 103 aa14.93□□□□□ -0.02
TCOF1-204ENST00000427724 CEP162Q5TB80 1403 aa14.93□□□□□ -0.02
TCOF1-204ENST00000427724 CLIP1P30622 1438 aa14.92□□□□□ -0.02
TCOF1-204ENST00000427724 CARMIL2Q6F5E8 1435 aa14.92□□□□□ -0.02
TCOF1-204ENST00000427724 A0A0G2JS52 829 aa14.89□□□□□ -0.03
TCOF1-204ENST00000427724 GGT6Q6P531 493 aa14.89□□□□□ -0.03
TCOF1-204ENST00000427724 KDM2AQ9Y2K7 1162 aa14.88□□□□□ -0.03
TCOF1-204ENST00000427724 WIZO95785 1651 aa14.86□□□□□ -0.03
TCOF1-204ENST00000427724 MIER1Q8N108 512 aa14.86□□□□□ -0.03
TCOF1-204ENST00000427724 CC2D2AQ9P2K1 1620 aa14.85□□□□□ -0.03
TCOF1-204ENST00000427724 FAM69CQ0P6D2 419 aa14.85□□□□□ -0.03
TCOF1-204ENST00000427724 NESP48681 1621 aa14.84□□□□□ -0.03
TCOF1-204ENST00000427724 NCAPD3P42695 1498 aa14.84□□□□□ -0.03
TCOF1-204ENST00000427724 HAP1P54257 671 aaPredicted RBP14.83□□□□□ -0.04
TCOF1-204ENST00000427724 SMARCA4P51532 1647 aa14.83□□□□□ -0.04
TCOF1-204ENST00000427724 RGL3Q3MIN7 710 aa14.83□□□□□ -0.04
TCOF1-204ENST00000427724 ZBTB7CA1YPR0 619 aa14.8□□□□□ -0.04
TCOF1-204ENST00000427724 EEA1Q15075 1411 aa14.8□□□□□ -0.04
TCOF1-204ENST00000427724 TNIKQ9UKE5 1360 aa14.79□□□□□ -0.04
TCOF1-204ENST00000427724 EFCAB2Q5VUJ9 269 aa14.78□□□□□ -0.04
TCOF1-204ENST00000427724 LMOD2Q6P5Q4 547 aa14.78□□□□□ -0.04
TCOF1-204ENST00000427724 AQRO60306 1485 aaKnown RBP eCLIP14.76□□□□□ -0.055e-7■■■■■ 40.7
TCOF1-204ENST00000427724 ABCC8Q09428 1581 aa14.76□□□□□ -0.05
TCOF1-204ENST00000427724 GOLGA3Q08378 1498 aa14.76□□□□□ -0.05
TCOF1-204ENST00000427724 TOP2AP11388 1531 aaKnown RBP14.75□□□□□ -0.05
TCOF1-204ENST00000427724 CCNB3Q8WWL7 1395 aa14.74□□□□□ -0.05
TCOF1-204ENST00000427724 PTPRGP23470 1445 aa14.73□□□□□ -0.05
TCOF1-204ENST00000427724 NEFMP07197 916 aa14.72□□□□□ -0.05
TCOF1-204ENST00000427724 RAD54L2Q9Y4B4 1467 aa14.71□□□□□ -0.05
TCOF1-204ENST00000427724 TONSLQ96HA7 1378 aa14.64□□□□□ -0.07
TCOF1-204ENST00000427724 KIF3BO15066 747 aa14.63□□□□□ -0.07
TCOF1-204ENST00000427724 GAPVD1Q14C86 1478 aa14.63□□□□□ -0.07
TCOF1-204ENST00000427724 ANP32CO43423 234 aa14.61□□□□□ -0.07
TCOF1-204ENST00000427724 DDX10Q13206 875 aaKnown RBP14.61□□□□□ -0.07
TCOF1-204ENST00000427724 HNRNPMP52272 730 aaKnown RBP eCLIP14.61□□□□□ -0.07
TCOF1-204ENST00000427724 BCL11AQ9H165 835 aa14.61□□□□□ -0.07
TCOF1-204ENST00000427724 FGD5Q6ZNL6 1462 aa14.6□□□□□ -0.07
TCOF1-204ENST00000427724 HDGFP51858 240 aaKnown RBP14.6□□□□□ -0.07
TCOF1-204ENST00000427724 TMC1Q8TDI8 760 aa14.59□□□□□ -0.07
TCOF1-204ENST00000427724 ANP32EQ9BTT0 268 aa14.59□□□□□ -0.07
TCOF1-204ENST00000427724 POGKQ9P215 609 aa14.59□□□□□ -0.07
TCOF1-204ENST00000427724 FHAD1B1AJZ9 1412 aa14.59□□□□□ -0.07
TCOF1-204ENST00000427724 MRC2Q9UBG0 1479 aa14.59□□□□□ -0.07
TCOF1-204ENST00000427724 SPAG9O60271 1321 aaKnown RBP14.57□□□□□ -0.08
TCOF1-204ENST00000427724 RUSC2Q8N2Y8 1516 aa14.55□□□□□ -0.08
TCOF1-204ENST00000427724 KANK1Q14678 1352 aa14.55□□□□□ -0.08
TCOF1-204ENST00000427724 HIRIP3Q9BW71 556 aaPredicted RBP14.55□□□□□ -0.08
TCOF1-204ENST00000427724 WASHC2CQ9Y4E1 1318 aa14.54□□□□□ -0.08
TCOF1-204ENST00000427724 RAPGEF2Q9Y4G8 1499 aa14.54□□□□□ -0.08
TCOF1-204ENST00000427724 FKBP8Q14318 412 aa14.54□□□□□ -0.08
TCOF1-204ENST00000427724 FHOD3Q2V2M9 1422 aa14.54□□□□□ -0.08
TCOF1-204ENST00000427724 SAFB2Q14151 953 aaKnown RBP eCLIP14.53□□□□□ -0.08
TCOF1-204ENST00000427724 BICRAQ9NZM4 1560 aa14.52□□□□□ -0.08
TCOF1-204ENST00000427724 NPM2Q86SE8 214 aaKnown RBP14.49□□□□□ -0.09
TCOF1-204ENST00000427724 STK26Q9P289 416 aa14.49□□□□□ -0.09
TCOF1-204ENST00000427724 EID1Q9Y6B2 187 aa14.49□□□□□ -0.09
TCOF1-204ENST00000427724 VPS8Q8N3P4 1428 aa14.48□□□□□ -0.09
TCOF1-204ENST00000427724 CFTRP13569 1480 aa14.48□□□□□ -0.09
TCOF1-204ENST00000427724 FMN1Q68DA7 1419 aa14.47□□□□□ -0.09
TCOF1-204ENST00000427724 NUTM2DQ5VT03 806 aaPredicted RBP14.47□□□□□ -0.09
TCOF1-204ENST00000427724 IGF1RP08069 1367 aa14.47□□□□□ -0.09
TCOF1-204ENST00000427724 GRIN2BQ13224 1484 aa14.47□□□□□ -0.09
TCOF1-204ENST00000427724 RTL5Q5HYW3 569 aaPredicted RBP14.46□□□□□ -0.09
TCOF1-204ENST00000427724 CLSPNQ9HAW4 1339 aa14.46□□□□□ -0.09
TCOF1-204ENST00000427724 SOX12O15370 315 aa14.46□□□□□ -0.09
TCOF1-204ENST00000427724 PPM1GO15355 546 aaPredicted RBP14.46□□□□□ -0.1
TCOF1-204ENST00000427724 KANK4Q5T7N3 995 aaPredicted RBP14.46□□□□□ -0.1
TCOF1-204ENST00000427724 PRG4Q92954 1404 aaPredicted RBP14.45□□□□□ -0.1
TCOF1-204ENST00000427724 IFT140Q96RY7 1462 aa14.44□□□□□ -0.1
TCOF1-204ENST00000427724 SUPT16HQ9Y5B9 1047 aaKnown RBP14.41□□□□□ -0.1
TCOF1-204ENST00000427724 SIN3AQ96ST3 1273 aa14.41□□□□□ -0.1
TCOF1-204ENST00000427724 ARXQ96QS3 562 aa14.4□□□□□ -0.1
TCOF1-204ENST00000427724 CCDC9Q9Y3X0 531 aaKnown RBP14.4□□□□□ -0.1
TCOF1-204ENST00000427724 NUTM2FA1L443 756 aa14.39□□□□□ -0.11
TCOF1-204ENST00000427724 HNRNPUQ00839 825 aaKnown RBP eCLIP14.38□□□□□ -0.11
TCOF1-204ENST00000427724 DCAF11Q8TEB1 546 aa14.38□□□□□ -0.11
TCOF1-204ENST00000427724 HMGXB3Q12766 1538 aa14.38□□□□□ -0.11
TCOF1-204ENST00000427724 PAK3O75914 559 aaPredicted RBP14.38□□□□□ -0.11
TCOF1-204ENST00000427724 TOPBP1Q92547 1522 aa14.38□□□□□ -0.11
TCOF1-204ENST00000427724 PKD2Q13563 968 aa14.37□□□□□ -0.11
TCOF1-204ENST00000427724 SALL2Q9Y467 1007 aaPredicted RBP14.36□□□□□ -0.11
TCOF1-204ENST00000427724 FOXD1Q16676 465 aa14.36□□□□□ -0.11
TCOF1-204ENST00000427724 SNAPC4Q5SXM2 1469 aa14.35□□□□□ -0.11
TCOF1-204ENST00000427724 RSPH4AQ5TD94 716 aa14.35□□□□□ -0.11
TCOF1-204ENST00000427724 CANXP27824 592 aaKnown RBP14.35□□□□□ -0.11
TCOF1-204ENST00000427724 SRPK2P78362 688 aaKnown RBP14.35□□□□□ -0.11
TCOF1-204ENST00000427724 AFAP1Q8N556 730 aa14.35□□□□□ -0.11
TCOF1-204ENST00000427724 CARD11Q9BXL7 1154 aa14.34□□□□□ -0.11
TCOF1-204ENST00000427724 RAPGEF3O95398 923 aa14.34□□□□□ -0.11
TCOF1-204ENST00000427724 ZBTB47Q9UFB7 747 aaPredicted RBP14.34□□□□□ -0.11
TCOF1-204ENST00000427724 NUP155O75694 1391 aa14.34□□□□□ -0.11
TCOF1-204ENST00000427724 POLA1P09884 1462 aaPredicted RBP14.33□□□□□ -0.12
TCOF1-204ENST00000427724 IRX6P78412 446 aaPredicted RBP14.31□□□□□ -0.12
TCOF1-204ENST00000427724 FAM9BQ8IZU0 186 aa14.3□□□□□ -0.12
TCOF1-204ENST00000427724 ANKRD30AQ9BXX3 1397 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms