RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 DCAF8L2P0C7V8 631 aa20.19■□□□□ 0.82
TCOF1-204ENST00000427724 NISCHQ9Y2I1 1504 aa19.53■□□□□ 0.72
TCOF1-204ENST00000427724 SHROOM4Q9ULL8 1493 aa18.3■□□□□ 0.52
TCOF1-204ENST00000427724 SUPT5HO00267 1087 aaKnown RBP18.2■□□□□ 0.5
TCOF1-204ENST00000427724 ABCC9O60706 1549 aa17.73■□□□□ 0.43
TCOF1-204ENST00000427724 EHMT2Q96KQ7 1210 aa17.62■□□□□ 0.41
TCOF1-204ENST00000427724 PABPN1Q86U42 306 aaKnown RBP eCLIP17.49■□□□□ 0.39
TCOF1-204ENST00000427724 FAM9AQ8IZU1 332 aaPredicted RBP17.19■□□□□ 0.34
TCOF1-204ENST00000427724 RANGAP1P46060 587 aaPredicted RBP17.14■□□□□ 0.33
TCOF1-204ENST00000427724 ATP1B4Q9UN42 357 aaPredicted RBP16.96■□□□□ 0.3
TCOF1-204ENST00000427724 TTBK1Q5TCY1 1321 aaPredicted RBP16.91■□□□□ 0.3
TCOF1-204ENST00000427724 APLP2Q06481 763 aa16.91■□□□□ 0.3
TCOF1-204ENST00000427724 TRIM41Q8WV44 630 aa16.84■□□□□ 0.29
TCOF1-204ENST00000427724 PCGF6Q9BYE7 350 aa16.78■□□□□ 0.28
TCOF1-204ENST00000427724 UBTFP17480 764 aaKnown RBP16.7■□□□□ 0.26
TCOF1-204ENST00000427724 FBLN2P98095 1184 aa16.63■□□□□ 0.25
TCOF1-204ENST00000427724 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.62■□□□□ 0.25
TCOF1-204ENST00000427724 HNRNPUL2Q1KMD3 747 aaKnown RBP16.62■□□□□ 0.25
TCOF1-204ENST00000427724 MYT1LQ9UL68 1186 aa16.56■□□□□ 0.24
TCOF1-204ENST00000427724 CHIC1Q5VXU3 224 aa16.48■□□□□ 0.23
TCOF1-204ENST00000427724 PELP1Q8IZL8 1130 aaKnown RBP16.43■□□□□ 0.22
TCOF1-204ENST00000427724 HRCP23327 699 aa16.4■□□□□ 0.22
TCOF1-204ENST00000427724 SCRIBQ14160 1630 aa16.4■□□□□ 0.22
TCOF1-204ENST00000427724 LOC105371045A0A1W2PR82 267 aa16.32■□□□□ 0.2
TCOF1-204ENST00000427724 PPARGC1BQ86YN6 1023 aaKnown RBP16.27■□□□□ 0.2
TCOF1-204ENST00000427724 RB1CC1Q8TDY2 1594 aa16.21■□□□□ 0.19
TCOF1-204ENST00000427724 CCDC180Q9P1Z9 1646 aa16.15■□□□□ 0.18
TCOF1-204ENST00000427724 TRIM26Q12899 539 aaPredicted RBP16.11■□□□□ 0.17
TCOF1-204ENST00000427724 ITGAEP38570 1179 aa16.07■□□□□ 0.16
TCOF1-204ENST00000427724 ARID3CA6NKF2 412 aa16.05■□□□□ 0.16
TCOF1-204ENST00000427724 ZEB1P37275 1124 aaPredicted RBP16.05■□□□□ 0.16
TCOF1-204ENST00000427724 ZCCHC6Q5VYS8 1495 aaKnown RBP16.01■□□□□ 0.15
TCOF1-204ENST00000427724 NPM1P06748 294 aaKnown RBP eCLIP15.97■□□□□ 0.15
TCOF1-204ENST00000427724 P3H3Q8IVL6 736 aa15.96■□□□□ 0.15
TCOF1-204ENST00000427724 MYT1Q01538 1121 aa15.96■□□□□ 0.14
TCOF1-204ENST00000427724 CCER1Q8TC90 406 aaPredicted RBP15.96■□□□□ 0.14
TCOF1-204ENST00000427724 NACADO15069 1562 aa15.94■□□□□ 0.14
TCOF1-204ENST00000427724 CHMP7Q8WUX9 453 aaPredicted RBP15.91■□□□□ 0.14
TCOF1-204ENST00000427724 ERCC6Q03468 1493 aa15.9■□□□□ 0.14
TCOF1-204ENST00000427724 PLPPR3Q6T4P5 718 aa15.89■□□□□ 0.13
TCOF1-204ENST00000427724 MYO15BQ96JP2 1530 aa15.86■□□□□ 0.13
TCOF1-204ENST00000427724 CENPBP07199 599 aaPredicted RBP15.85■□□□□ 0.13
TCOF1-204ENST00000427724 TRHP20396 242 aaPredicted RBP15.76■□□□□ 0.11
TCOF1-204ENST00000427724 FAM50AQ14320 339 aaKnown RBP15.7■□□□□ 0.1
TCOF1-204ENST00000427724 ZNF777Q9ULD5 760 aaPredicted RBP15.7■□□□□ 0.1
TCOF1-204ENST00000427724 ESF1Q9H501 851 aaKnown RBP15.7■□□□□ 0.1
TCOF1-204ENST00000427724 BAZ1BQ9UIG0 1483 aaKnown RBP15.69■□□□□ 0.1
TCOF1-204ENST00000427724 YTHDC1Q96MU7 727 aaKnown RBP15.67■□□□□ 0.1
TCOF1-204ENST00000427724 CSRNP3Q8WYN3 585 aa15.66■□□□□ 0.1
TCOF1-204ENST00000427724 BCANQ96GW7 911 aa15.63■□□□□ 0.09
TCOF1-204ENST00000427724 CECR2Q9BXF3 1484 aa15.61■□□□□ 0.09
TCOF1-204ENST00000427724 DCAF1Q9Y4B6 1507 aa15.6■□□□□ 0.09
TCOF1-204ENST00000427724 POLR3GLQ9BT43 218 aa15.6■□□□□ 0.09
TCOF1-204ENST00000427724 CDK11AQ9UQ88 783 aaPredicted RBP15.59■□□□□ 0.09
TCOF1-204ENST00000427724 KCNH8Q96L42 1107 aa15.57■□□□□ 0.08
TCOF1-204ENST00000427724 TRIM52Q96A61 297 aa15.57■□□□□ 0.08
TCOF1-204ENST00000427724 SLC4A1APQ9BWU0 796 aaKnown RBP15.55■□□□□ 0.08
TCOF1-204ENST00000427724 GTF3C3Q9Y5Q9 886 aa15.49■□□□□ 0.07
TCOF1-204ENST00000427724 SCAF1Q9H7N4 1312 aaKnown RBP15.48■□□□□ 0.07
TCOF1-204ENST00000427724 CNGB1Q14028 1251 aaPredicted RBP15.47■□□□□ 0.07
TCOF1-204ENST00000427724 RSF1Q96T23 1441 aaPredicted RBP15.45■□□□□ 0.06
TCOF1-204ENST00000427724 DIEXFQ68CQ4 756 aaKnown RBP15.43■□□□□ 0.06
TCOF1-204ENST00000427724 STAG3Q9UJ98 1225 aa15.42■□□□□ 0.06
TCOF1-204ENST00000427724 ARID4BQ4LE39 1312 aaPredicted RBP15.41■□□□□ 0.06
TCOF1-204ENST00000427724 DNAJC5BQ9UF47 199 aa15.39■□□□□ 0.05
TCOF1-204ENST00000427724 PDS5BQ9NTI5 1447 aa15.39■□□□□ 0.05
TCOF1-204ENST00000427724 CHGAP10645 457 aaKnown RBP15.38■□□□□ 0.05
TCOF1-204ENST00000427724 BAZ1AQ9NRL2 1556 aaPredicted RBP15.36■□□□□ 0.05
TCOF1-204ENST00000427724 ZNF326Q5BKZ1 582 aaKnown RBP15.35■□□□□ 0.05
TCOF1-204ENST00000427724 ACIN1Q9UKV3 1341 aaKnown RBP15.35■□□□□ 0.05
TCOF1-204ENST00000427724 CYB5RLQ6IPT4 315 aa15.31■□□□□ 0.04
TCOF1-204ENST00000427724 PLEKHD1A6NEE1 506 aa15.3■□□□□ 0.04
TCOF1-204ENST00000427724 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.29■□□□□ 0.043e-8■■■■□ 21.1
TCOF1-204ENST00000427724 TDRD9Q8NDG6 1382 aaKnown RBP15.27■□□□□ 0.03
TCOF1-204ENST00000427724 SENP3Q9H4L4 574 aaPredicted RBP15.26■□□□□ 0.03
TCOF1-204ENST00000427724 WRNQ14191 1432 aaPredicted RBP eCLIP15.24■□□□□ 0.03
TCOF1-204ENST00000427724 NEUROD1Q13562 356 aa15.23■□□□□ 0.03
TCOF1-204ENST00000427724 OSCARQ8IYS5 282 aa15.23■□□□□ 0.03
TCOF1-204ENST00000427724 TSPY4P0CV99 314 aa15.23■□□□□ 0.03
TCOF1-204ENST00000427724 TSPY10P0CW01 314 aa15.23■□□□□ 0.03
TCOF1-204ENST00000427724 CHIC2Q9UKJ5 165 aa15.22■□□□□ 0.03
TCOF1-204ENST00000427724 CADPSQ9ULU8 1353 aa15.21■□□□□ 0.03
TCOF1-204ENST00000427724 SMARCA2P51531 1590 aa15.2■□□□□ 0.02
TCOF1-204ENST00000427724 ERICH6Q7L0X2 663 aa15.18■□□□□ 0.02
TCOF1-204ENST00000427724 MROH2BQ7Z745 1585 aa15.18■□□□□ 0.02
TCOF1-204ENST00000427724 MLECQ14165 292 aa15.17■□□□□ 0.02
TCOF1-204ENST00000427724 KIF27Q86VH2 1401 aa15.15■□□□□ 0.02
TCOF1-204ENST00000427724 MTUS2Q5JR59 1369 aa15.13■□□□□ 0.01
TCOF1-204ENST00000427724 ZNF316A6NFI3 1004 aaPredicted RBP15.13■□□□□ 0.01
TCOF1-204ENST00000427724 SOGA1O94964 1423 aa15.13■□□□□ 0.01
TCOF1-204ENST00000427724 ATAD2BQ9ULI0 1458 aa15.12■□□□□ 0.01
TCOF1-204ENST00000427724 CUX2O14529 1486 aa15.11■□□□□ 0.01
TCOF1-204ENST00000427724 AEBP2Q6ZN18 517 aaPredicted RBP15.08■□□□□ 0
TCOF1-204ENST00000427724 PLEKHG5O94827 1062 aa15.07■□□□□ 0
TCOF1-204ENST00000427724 C14orf37Q86TY3 774 aa15.07■□□□□ 0
TCOF1-204ENST00000427724 CARMIL1Q5VZK9 1371 aa15.03■□□□□ -0
TCOF1-204ENST00000427724 CCDC88BA6NC98 1476 aa15.03■□□□□ -0
TCOF1-204ENST00000427724 CEP164Q9UPV0 1460 aa15.03■□□□□ -0
TCOF1-204ENST00000427724 EIF4G1Q04637 1599 aaKnown RBP15.03■□□□□ -0
TCOF1-204ENST00000427724 PPP1R15AO75807 674 aaPredicted RBP15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms