RNA–Protein interactions for RNA: ENST00000423141.1

NPC1L1-203, Transcript of NPC1 like intracellular cholesterol transporter 1, humanhuman

TSL 1 (best) BASIC

Gene NPC1L1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1-203ENST00000423141 NEFLP07196 543 aa23.65■■□□□ 1.38
NPC1L1-203ENST00000423141 SETD5Q9C0A6 1442 aa23.61■■□□□ 1.37
NPC1L1-203ENST00000423141 KIF27Q86VH2 1401 aa23.59■■□□□ 1.37
NPC1L1-203ENST00000423141 CUX1P39880 1505 aa23.58■■□□□ 1.37
NPC1L1-203ENST00000423141 MSH5O43196 834 aa23.54■■□□□ 1.36
NPC1L1-203ENST00000423141 PHLDB1Q86UU1 1377 aa23.53■■□□□ 1.36
NPC1L1-203ENST00000423141 TIAM1Q13009 1591 aa23.52■■□□□ 1.36
NPC1L1-203ENST00000423141 CCER2I3L3R5 266 aa23.52■■□□□ 1.36
NPC1L1-203ENST00000423141 FAM50AQ14320 339 aaKnown RBP23.52■■□□□ 1.36
NPC1L1-203ENST00000423141 ANP32CO43423 234 aa23.51■■□□□ 1.35
NPC1L1-203ENST00000423141 LRRC9Q6ZRR7 1453 aa23.45■■□□□ 1.35
NPC1L1-203ENST00000423141 MAP3K1Q13233 1512 aa23.4■■□□□ 1.34
NPC1L1-203ENST00000423141 IRX6P78412 446 aaPredicted RBP23.4■■□□□ 1.34
NPC1L1-203ENST00000423141 TIMELESSQ9UNS1 1208 aa23.4■■□□□ 1.34
NPC1L1-203ENST00000423141 IGF1RP08069 1367 aa23.34■■□□□ 1.33
NPC1L1-203ENST00000423141 P3H3Q8IVL6 736 aa23.31■■□□□ 1.32
NPC1L1-203ENST00000423141 ATP1B4Q9UN42 357 aaPredicted RBP23.31■■□□□ 1.32
NPC1L1-203ENST00000423141 HNRNPUQ00839 825 aaKnown RBP eCLIP23.3■■□□□ 1.32
NPC1L1-203ENST00000423141 FANCIQ9NVI1 1328 aa23.3■■□□□ 1.32
NPC1L1-203ENST00000423141 TONSLQ96HA7 1378 aa23.27■■□□□ 1.32
NPC1L1-203ENST00000423141 CDK11AQ9UQ88 783 aaPredicted RBP23.26■■□□□ 1.31
NPC1L1-203ENST00000423141 PCF11O94913 1555 aaKnown RBP23.25■■□□□ 1.31
NPC1L1-203ENST00000423141 CARMIL1Q5VZK9 1371 aa23.24■■□□□ 1.31
NPC1L1-203ENST00000423141 CFAP43Q8NDM7 1665 aa23.24■■□□□ 1.31
NPC1L1-203ENST00000423141 CFTRP13569 1480 aa23.23■■□□□ 1.31
NPC1L1-203ENST00000423141 FHAD1B1AJZ9 1412 aa23.21■■□□□ 1.31
NPC1L1-203ENST00000423141 ERICH6Q7L0X2 663 aa23.2■■□□□ 1.3
NPC1L1-203ENST00000423141 HMGXB3Q12766 1538 aa23.17■■□□□ 1.3
NPC1L1-203ENST00000423141 NCAPD3P42695 1498 aa23.17■■□□□ 1.3
NPC1L1-203ENST00000423141 FHOD3Q2V2M9 1422 aa23.15■■□□□ 1.3
NPC1L1-203ENST00000423141 CCDC18Q5T9S5 1454 aa23.14■■□□□ 1.29
NPC1L1-203ENST00000423141 PTPRKQ15262 1439 aa23.1■■□□□ 1.29
NPC1L1-203ENST00000423141 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.1■■□□□ 1.29
NPC1L1-203ENST00000423141 CCDC184Q52MB2 194 aa23.09■■□□□ 1.29
NPC1L1-203ENST00000423141 WASHC2AQ641Q2 1341 aa23.08■■□□□ 1.29
NPC1L1-203ENST00000423141 KDM5BQ9UGL1 1544 aa23.08■■□□□ 1.29
NPC1L1-203ENST00000423141 UACAQ9BZF9 1416 aa23.08■■□□□ 1.28
NPC1L1-203ENST00000423141 FGD6Q6ZV73 1430 aa23.07■■□□□ 1.28
NPC1L1-203ENST00000423141 PPP4R2Q9NY27 417 aa23.06■■□□□ 1.28
NPC1L1-203ENST00000423141 FGD5Q6ZNL6 1462 aa23.06■■□□□ 1.28
NPC1L1-203ENST00000423141 AQRO60306 1485 aaKnown RBP eCLIP23.05■■□□□ 1.285e-8■■■□□ 17.4
NPC1L1-203ENST00000423141 FYCO1Q9BQS8 1478 aa23.05■■□□□ 1.28
NPC1L1-203ENST00000423141 HFM1A2PYH4 1435 aa23.04■■□□□ 1.28
NPC1L1-203ENST00000423141 HSPA5P11021 654 aaKnown RBP23.03■■□□□ 1.28
NPC1L1-203ENST00000423141 B4GALNT3Q6L9W6 998 aa23.03■■□□□ 1.28
NPC1L1-203ENST00000423141 PTPN23Q9H3S7 1636 aa23.02■■□□□ 1.28
NPC1L1-203ENST00000423141 CASKIN1Q8WXD9 1431 aa23.02■■□□□ 1.28
NPC1L1-203ENST00000423141 ERICH6BQ5W0A0 696 aa22.99■■□□□ 1.27
NPC1L1-203ENST00000423141 NAIPQ13075 1403 aa22.98■■□□□ 1.27
NPC1L1-203ENST00000423141 DEKP35659 375 aaKnown RBP22.97■■□□□ 1.27
NPC1L1-203ENST00000423141 FAM9BQ8IZU0 186 aa22.96■■□□□ 1.27
NPC1L1-203ENST00000423141 PRDM2Q13029 1718 aa22.94■■□□□ 1.26
NPC1L1-203ENST00000423141 MTUS2Q5JR59 1369 aa22.92■■□□□ 1.26
NPC1L1-203ENST00000423141 C11orf95C9JLR9 678 aaPredicted RBP22.91■■□□□ 1.26
NPC1L1-203ENST00000423141 CNTLNQ9NXG0 1405 aa22.91■■□□□ 1.26
NPC1L1-203ENST00000423141 NCOA2Q15596 1464 aa22.9■■□□□ 1.26
NPC1L1-203ENST00000423141 EFCAB5A4FU69 1503 aa22.89■■□□□ 1.26
NPC1L1-203ENST00000423141 EIF4G2P78344 907 aaKnown RBP eCLIP22.89■■□□□ 1.25
NPC1L1-203ENST00000423141 PRKRIP1Q9H875 184 aaPredicted RBP22.89■■□□□ 1.25
NPC1L1-203ENST00000423141 MRS2Q9HD23 443 aa22.88■■□□□ 1.25
NPC1L1-203ENST00000423141 PAK3O75914 559 aaPredicted RBP22.87■■□□□ 1.25
NPC1L1-203ENST00000423141 MYT1LQ9UL68 1186 aa22.87■■□□□ 1.25
NPC1L1-203ENST00000423141 SNAPC4Q5SXM2 1469 aa22.87■■□□□ 1.25
NPC1L1-203ENST00000423141 RRP7BPQ9NSQ0 103 aa22.87■■□□□ 1.25
NPC1L1-203ENST00000423141 FMN1Q68DA7 1419 aa22.86■■□□□ 1.25
NPC1L1-203ENST00000423141 NBR1Q14596 966 aa22.86■■□□□ 1.25
NPC1L1-203ENST00000423141 ZBED9Q6R2W3 1325 aa22.86■■□□□ 1.25
NPC1L1-203ENST00000423141 CADPSQ9ULU8 1353 aa22.86■■□□□ 1.25
NPC1L1-203ENST00000423141 DENND4BO75064 1496 aaPredicted RBP22.85■■□□□ 1.25
NPC1L1-203ENST00000423141 NOP58Q9Y2X3 529 aaKnown RBP22.85■■□□□ 1.25
NPC1L1-203ENST00000423141 CHIC2Q9UKJ5 165 aa22.84■■□□□ 1.25
NPC1L1-203ENST00000423141 MYOM3Q5VTT5 1437 aa22.83■■□□□ 1.25
NPC1L1-203ENST00000423141 RAD54L2Q9Y4B4 1467 aa22.83■■□□□ 1.25
NPC1L1-203ENST00000423141 CCDC7Q96M83 1385 aa22.81■■□□□ 1.24
NPC1L1-203ENST00000423141 LRRIQ1Q96JM4 1722 aa22.8■■□□□ 1.24
NPC1L1-203ENST00000423141 L3MBTL2Q969R5 705 aa22.79■■□□□ 1.24
NPC1L1-203ENST00000423141 NCOA1Q15788 1441 aa22.78■■□□□ 1.24
NPC1L1-203ENST00000423141 FOXD1Q16676 465 aa22.77■■□□□ 1.24
NPC1L1-203ENST00000423141 CTTNBP2Q8WZ74 1663 aa22.76■■□□□ 1.23
NPC1L1-203ENST00000423141 AKNAQ7Z591 1439 aa22.75■■□□□ 1.23
NPC1L1-203ENST00000423141 KDM6BO15054 1643 aa22.74■■□□□ 1.23
NPC1L1-203ENST00000423141 HECW1Q76N89 1606 aa22.7■■□□□ 1.23
NPC1L1-203ENST00000423141 NBPF8Q3BBV2 869 aa22.7■■□□□ 1.22
NPC1L1-203ENST00000423141 MPHOSPH9Q99550 1183 aa22.7■■□□□ 1.22
NPC1L1-203ENST00000423141 ABCA10Q8WWZ4 1543 aa22.7■■□□□ 1.22
NPC1L1-203ENST00000423141 SUPT6HQ7KZ85 1726 aaKnown RBP22.7■■□□□ 1.22
NPC1L1-203ENST00000423141 CNGB1Q14028 1251 aaPredicted RBP22.7■■□□□ 1.22
NPC1L1-203ENST00000423141 KIF7Q2M1P5 1343 aa22.69■■□□□ 1.22
NPC1L1-203ENST00000423141 GRIN2BQ13224 1484 aa22.69■■□□□ 1.22
NPC1L1-203ENST00000423141 SENP3-EIF4A1A0A087X0R7 540 aa22.69■■□□□ 1.22
NPC1L1-203ENST00000423141 POLA1P09884 1462 aaPredicted RBP22.67■■□□□ 1.22
NPC1L1-203ENST00000423141 FANCD2Q9BXW9 1451 aa22.67■■□□□ 1.22
NPC1L1-203ENST00000423141 CC2D2AQ9P2K1 1620 aa22.66■■□□□ 1.22
NPC1L1-203ENST00000423141 MAGI3Q5TCQ9 1506 aa22.66■■□□□ 1.22
NPC1L1-203ENST00000423141 UGGT2Q9NYU1 1516 aa22.66■■□□□ 1.22
NPC1L1-203ENST00000423141 GCC2Q8IWJ2 1684 aa22.66■■□□□ 1.22
NPC1L1-203ENST00000423141 CUL7Q14999 1698 aa22.65■■□□□ 1.22
NPC1L1-203ENST00000423141 EHBP1L1Q8N3D4 1523 aa22.65■■□□□ 1.22
NPC1L1-203ENST00000423141 SMG6Q86US8 1419 aaKnown RBP22.64■■□□□ 1.21
NPC1L1-203ENST00000423141 CCDC136Q96JN2 1154 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms