RNA–Protein interactions for RNA: ENST00000423141.1

NPC1L1-203, Transcript of NPC1 like intracellular cholesterol transporter 1, humanhuman

TSL 1 (best) BASIC

Gene NPC1L1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1-203ENST00000423141 NISCHQ9Y2I1 1504 aa32.51■■■□□ 2.79
NPC1L1-203ENST00000423141 SHROOM4Q9ULL8 1493 aa28.59■■■□□ 2.17
NPC1L1-203ENST00000423141 SUPT5HO00267 1087 aaKnown RBP28.32■■■□□ 2.12
NPC1L1-203ENST00000423141 HRCP23327 699 aa28.1■■■□□ 2.09
NPC1L1-203ENST00000423141 MYO15BQ96JP2 1530 aa27.94■■■□□ 2.06
NPC1L1-203ENST00000423141 CHIC1Q5VXU3 224 aa27.76■■■□□ 2.03
NPC1L1-203ENST00000423141 PCGF6Q9BYE7 350 aa27.73■■■□□ 2.03
NPC1L1-203ENST00000423141 PPARGC1BQ86YN6 1023 aaKnown RBP27.63■■■□□ 2.01
NPC1L1-203ENST00000423141 ZCCHC6Q5VYS8 1495 aaKnown RBP27.62■■■□□ 2.01
NPC1L1-203ENST00000423141 DCAF1Q9Y4B6 1507 aa27.15■■□□□ 1.94
NPC1L1-203ENST00000423141 CCDC180Q9P1Z9 1646 aa27.12■■□□□ 1.93
NPC1L1-203ENST00000423141 LOC105371045A0A1W2PR82 267 aa27.12■■□□□ 1.93
NPC1L1-203ENST00000423141 DCAF8L2P0C7V8 631 aa27.09■■□□□ 1.93
NPC1L1-203ENST00000423141 TRIM26Q12899 539 aaPredicted RBP26.86■■□□□ 1.89
NPC1L1-203ENST00000423141 PELP1Q8IZL8 1130 aaKnown RBP26.47■■□□□ 1.83
NPC1L1-203ENST00000423141 ZEB1P37275 1124 aaPredicted RBP26.46■■□□□ 1.83
NPC1L1-203ENST00000423141 SCAF1Q9H7N4 1312 aaKnown RBP26.45■■□□□ 1.82
NPC1L1-203ENST00000423141 ABCC9O60706 1549 aa26.2■■□□□ 1.79
NPC1L1-203ENST00000423141 FAM9AQ8IZU1 332 aaPredicted RBP26.2■■□□□ 1.79
NPC1L1-203ENST00000423141 TRIM41Q8WV44 630 aa26.19■■□□□ 1.78
NPC1L1-203ENST00000423141 EHMT2Q96KQ7 1210 aa26.11■■□□□ 1.77
NPC1L1-203ENST00000423141 RSF1Q96T23 1441 aaPredicted RBP26.08■■□□□ 1.77
NPC1L1-203ENST00000423141 RB1CC1Q8TDY2 1594 aa25.97■■□□□ 1.75
NPC1L1-203ENST00000423141 ACIN1Q9UKV3 1341 aaKnown RBP25.85■■□□□ 1.73
NPC1L1-203ENST00000423141 SCRIBQ14160 1630 aa25.85■■□□□ 1.73
NPC1L1-203ENST00000423141 NEUROD1Q13562 356 aa25.84■■□□□ 1.73
NPC1L1-203ENST00000423141 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.83■■□□□ 1.72
NPC1L1-203ENST00000423141 CCER1Q8TC90 406 aaPredicted RBP25.71■■□□□ 1.71
NPC1L1-203ENST00000423141 GTF3C3Q9Y5Q9 886 aa25.64■■□□□ 1.7
NPC1L1-203ENST00000423141 DIEXFQ68CQ4 756 aaKnown RBP25.59■■□□□ 1.69
NPC1L1-203ENST00000423141 CENPBP07199 599 aaPredicted RBP25.5■■□□□ 1.67
NPC1L1-203ENST00000423141 CECR2Q9BXF3 1484 aa25.48■■□□□ 1.67
NPC1L1-203ENST00000423141 TTBK1Q5TCY1 1321 aaPredicted RBP25.43■■□□□ 1.66
NPC1L1-203ENST00000423141 MROH2BQ7Z745 1585 aa25.41■■□□□ 1.66
NPC1L1-203ENST00000423141 WIZO95785 1651 aa25.32■■□□□ 1.64
NPC1L1-203ENST00000423141 MYT1Q01538 1121 aa25.27■■□□□ 1.64
NPC1L1-203ENST00000423141 EIF4G1Q04637 1599 aaKnown RBP25.19■■□□□ 1.62
NPC1L1-203ENST00000423141 WRNQ14191 1432 aaPredicted RBP eCLIP25.19■■□□□ 1.62
NPC1L1-203ENST00000423141 YTHDC1Q96MU7 727 aaKnown RBP25.19■■□□□ 1.62
NPC1L1-203ENST00000423141 ZNF316A6NFI3 1004 aaPredicted RBP25.16■■□□□ 1.62
NPC1L1-203ENST00000423141 CEP162Q5TB80 1403 aa25.14■■□□□ 1.62
NPC1L1-203ENST00000423141 BAZ1AQ9NRL2 1556 aaPredicted RBP25.09■■□□□ 1.61
NPC1L1-203ENST00000423141 CCDC88BA6NC98 1476 aa25.09■■□□□ 1.61
NPC1L1-203ENST00000423141 ABCC8Q09428 1581 aa25.08■■□□□ 1.61
NPC1L1-203ENST00000423141 MIER1Q8N108 512 aa25.01■■□□□ 1.59
NPC1L1-203ENST00000423141 SOGA1O94964 1423 aa25■■□□□ 1.59
NPC1L1-203ENST00000423141 NACADO15069 1562 aa24.96■■□□□ 1.59
NPC1L1-203ENST00000423141 TNIKQ9UKE5 1360 aa24.96■■□□□ 1.59
NPC1L1-203ENST00000423141 UBTFP17480 764 aaKnown RBP24.89■■□□□ 1.57
NPC1L1-203ENST00000423141 RUSC2Q8N2Y8 1516 aa24.87■■□□□ 1.57
NPC1L1-203ENST00000423141 HNRNPUL2Q1KMD3 747 aaKnown RBP24.83■■□□□ 1.57
NPC1L1-203ENST00000423141 CSRNP3Q8WYN3 585 aa24.83■■□□□ 1.56
NPC1L1-203ENST00000423141 TOP2AP11388 1531 aaKnown RBP24.79■■□□□ 1.56
NPC1L1-203ENST00000423141 SMARCA2P51531 1590 aa24.74■■□□□ 1.55
NPC1L1-203ENST00000423141 EEA1Q15075 1411 aa24.7■■□□□ 1.54
NPC1L1-203ENST00000423141 GOLGA3Q08378 1498 aa24.69■■□□□ 1.54
NPC1L1-203ENST00000423141 SMARCA4P51532 1647 aa24.61■■□□□ 1.53
NPC1L1-203ENST00000423141 CLIP1P30622 1438 aa24.5■■□□□ 1.51
NPC1L1-203ENST00000423141 SUPT16HQ9Y5B9 1047 aaKnown RBP24.49■■□□□ 1.51
NPC1L1-203ENST00000423141 CEP164Q9UPV0 1460 aa24.46■■□□□ 1.51
NPC1L1-203ENST00000423141 VPS8Q8N3P4 1428 aa24.45■■□□□ 1.5
NPC1L1-203ENST00000423141 RANGAP1P46060 587 aaPredicted RBP24.41■■□□□ 1.5
NPC1L1-203ENST00000423141 KIF21BO75037 1637 aa24.39■■□□□ 1.5
NPC1L1-203ENST00000423141 APLP2Q06481 763 aa24.39■■□□□ 1.5
NPC1L1-203ENST00000423141 SYNJ1O43426 1573 aa24.35■■□□□ 1.49
NPC1L1-203ENST00000423141 DHX57Q6P158 1386 aaKnown RBP24.33■■□□□ 1.49
NPC1L1-203ENST00000423141 CLSPNQ9HAW4 1339 aa24.32■■□□□ 1.48
NPC1L1-203ENST00000423141 RAPGEF2Q9Y4G8 1499 aa24.31■■□□□ 1.48
NPC1L1-203ENST00000423141 TSHZ2Q9NRE2 1034 aa24.3■■□□□ 1.48
NPC1L1-203ENST00000423141 BAZ1BQ9UIG0 1483 aaKnown RBP24.23■■□□□ 1.47
NPC1L1-203ENST00000423141 UNC13AQ9UPW8 1703 aa24.22■■□□□ 1.47
NPC1L1-203ENST00000423141 KCNH8Q96L42 1107 aa24.15■■□□□ 1.46
NPC1L1-203ENST00000423141 ANP32EQ9BTT0 268 aa24.14■■□□□ 1.46
NPC1L1-203ENST00000423141 KANK4Q5T7N3 995 aaPredicted RBP24.13■■□□□ 1.45
NPC1L1-203ENST00000423141 PABPN1Q86U42 306 aaKnown RBP eCLIP24.06■■□□□ 1.44
NPC1L1-203ENST00000423141 BCANQ96GW7 911 aa24.05■■□□□ 1.44
NPC1L1-203ENST00000423141 ARAP1Q96P48 1450 aa24.03■■□□□ 1.44
NPC1L1-203ENST00000423141 PEG3Q9GZU2 1588 aa23.99■■□□□ 1.43
NPC1L1-203ENST00000423141 RRBP1Q9P2E9 1410 aaKnown RBP23.97■■□□□ 1.43
NPC1L1-203ENST00000423141 ITGAEP38570 1179 aa23.95■■□□□ 1.42
NPC1L1-203ENST00000423141 FKBP8Q14318 412 aa23.91■■□□□ 1.42
NPC1L1-203ENST00000423141 CUX2O14529 1486 aa23.91■■□□□ 1.42
NPC1L1-203ENST00000423141 BICRAQ9NZM4 1560 aa23.88■■□□□ 1.41
NPC1L1-203ENST00000423141 TOP2BQ02880 1626 aa23.88■■□□□ 1.41
NPC1L1-203ENST00000423141 BCL11AQ9H165 835 aa23.88■■□□□ 1.41
NPC1L1-203ENST00000423141 PRXQ9BXM0 1461 aa23.88■■□□□ 1.41
NPC1L1-203ENST00000423141 CCNB3Q8WWL7 1395 aa23.88■■□□□ 1.41
NPC1L1-203ENST00000423141 ERICH3Q5RHP9 1530 aa23.86■■□□□ 1.41
NPC1L1-203ENST00000423141 ATAD2BQ9ULI0 1458 aa23.84■■□□□ 1.41
NPC1L1-203ENST00000423141 MAPKBP1O60336 1514 aa23.82■■□□□ 1.4
NPC1L1-203ENST00000423141 DDX10Q13206 875 aaKnown RBP23.82■■□□□ 1.4
NPC1L1-203ENST00000423141 RAB3GAP2Q9H2M9 1393 aa23.81■■□□□ 1.4
NPC1L1-203ENST00000423141 RBM19Q9Y4C8 960 aaKnown RBP23.75■■□□□ 1.39
NPC1L1-203ENST00000423141 BIVM-ERCC5R4GMW8 1640 aa23.74■■□□□ 1.39
NPC1L1-203ENST00000423141 WDR97A6NE52 1622 aa23.72■■□□□ 1.39
NPC1L1-203ENST00000423141 SIN3AQ96ST3 1273 aa23.71■■□□□ 1.39
NPC1L1-203ENST00000423141 ARHGAP35Q9NRY4 1499 aa23.7■■□□□ 1.39
NPC1L1-203ENST00000423141 TRIM52Q96A61 297 aa23.69■■□□□ 1.38
NPC1L1-203ENST00000423141 HIRIP3Q9BW71 556 aaPredicted RBP23.68■■□□□ 1.38
NPC1L1-203ENST00000423141 PPP1R15AO75807 674 aaPredicted RBP23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 112.8 ms