RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 CHD1O14646 1710 aa24.92■■□□□ 1.58
SHMT2-202ENST00000414700 CTTNBP2Q8WZ74 1663 aa24.91■■□□□ 1.58
SHMT2-202ENST00000414700 CEP170Q5SW79 1584 aa24.86■■□□□ 1.57
SHMT2-202ENST00000414700 CLIP1P30622 1438 aa24.81■■□□□ 1.56
SHMT2-202ENST00000414700 NUP160Q12769 1436 aa24.8■■□□□ 1.56
SHMT2-202ENST00000414700 IQGAP2Q13576 1575 aa24.77■■□□□ 1.56
SHMT2-202ENST00000414700 KIAA0586Q9BVV6 1533 aa24.75■■□□□ 1.55
SHMT2-202ENST00000414700 ARHGAP35Q9NRY4 1499 aa24.72■■□□□ 1.55
SHMT2-202ENST00000414700 P3H3Q8IVL6 736 aa24.66■■□□□ 1.54
SHMT2-202ENST00000414700 ARAP1Q96P48 1450 aa24.66■■□□□ 1.54
SHMT2-202ENST00000414700 SAMD9Q5K651 1589 aa24.63■■□□□ 1.53
SHMT2-202ENST00000414700 UGGT2Q9NYU1 1516 aa24.63■■□□□ 1.53
SHMT2-202ENST00000414700 EFCAB5A4FU69 1503 aa24.6■■□□□ 1.53
SHMT2-202ENST00000414700 JPH4Q96JJ6 628 aa24.6■■□□□ 1.53
SHMT2-202ENST00000414700 CLASP1Q7Z460 1538 aa24.59■■□□□ 1.53
SHMT2-202ENST00000414700 FHOD3Q2V2M9 1422 aa24.59■■□□□ 1.53
SHMT2-202ENST00000414700 DISP1Q96F81 1524 aa24.57■■□□□ 1.52
SHMT2-202ENST00000414700 OSCARQ8IYS5 282 aa24.53■■□□□ 1.52
SHMT2-202ENST00000414700 KIAA0556O60303 1618 aa24.53■■□□□ 1.52
SHMT2-202ENST00000414700 SHROOM2Q13796 1616 aa24.52■■□□□ 1.52
SHMT2-202ENST00000414700 VPS8Q8N3P4 1428 aa24.52■■□□□ 1.52
SHMT2-202ENST00000414700 PRG4Q92954 1404 aaPredicted RBP24.48■■□□□ 1.51
SHMT2-202ENST00000414700 ERCC6L2Q5T890 1561 aa24.46■■□□□ 1.51
SHMT2-202ENST00000414700 TTBK1Q5TCY1 1321 aaPredicted RBP24.45■■□□□ 1.5
SHMT2-202ENST00000414700 CARMIL2Q6F5E8 1435 aa24.43■■□□□ 1.5
SHMT2-202ENST00000414700 PCF11O94913 1555 aaKnown RBP24.39■■□□□ 1.49
SHMT2-202ENST00000414700 FMN1Q68DA7 1419 aa24.38■■□□□ 1.49
SHMT2-202ENST00000414700 PPARGC1BQ86YN6 1023 aaKnown RBP24.33■■□□□ 1.49
SHMT2-202ENST00000414700 ATP1B4Q9UN42 357 aaPredicted RBP24.31■■□□□ 1.48
SHMT2-202ENST00000414700 CASKIN1Q8WXD9 1431 aa24.3■■□□□ 1.48
SHMT2-202ENST00000414700 FYCO1Q9BQS8 1478 aa24.28■■□□□ 1.48
SHMT2-202ENST00000414700 PLB1Q6P1J6 1458 aa24.27■■□□□ 1.48
SHMT2-202ENST00000414700 LRRIQ1Q96JM4 1722 aa24.27■■□□□ 1.48
SHMT2-202ENST00000414700 PTPRGP23470 1445 aa24.27■■□□□ 1.48
SHMT2-202ENST00000414700 RAPGEF6Q8TEU7 1601 aa24.23■■□□□ 1.47
SHMT2-202ENST00000414700 ARID3CA6NKF2 412 aa24.21■■□□□ 1.47
SHMT2-202ENST00000414700 APLP2Q06481 763 aa24.2■■□□□ 1.47
SHMT2-202ENST00000414700 HECW1Q76N89 1606 aa24.2■■□□□ 1.46
SHMT2-202ENST00000414700 ABCA8O94911 1581 aa24.19■■□□□ 1.46
SHMT2-202ENST00000414700 NUP153P49790 1475 aaKnown RBP24.19■■□□□ 1.46
SHMT2-202ENST00000414700 TIAM1Q13009 1591 aa24.18■■□□□ 1.46
SHMT2-202ENST00000414700 KANK4Q5T7N3 995 aaPredicted RBP24.17■■□□□ 1.46
SHMT2-202ENST00000414700 ARHGEF11O15085 1522 aa24.17■■□□□ 1.46
SHMT2-202ENST00000414700 CFAP43Q8NDM7 1665 aa24.15■■□□□ 1.46
SHMT2-202ENST00000414700 EPRSP07814 1512 aaKnown RBP24.15■■□□□ 1.46
SHMT2-202ENST00000414700 CDK13Q14004 1512 aaKnown RBP24.15■■□□□ 1.46
SHMT2-202ENST00000414700 HRCP23327 699 aa24.15■■□□□ 1.46
SHMT2-202ENST00000414700 UACAQ9BZF9 1416 aa24.12■■□□□ 1.45
SHMT2-202ENST00000414700 MAP3K1Q13233 1512 aa24.11■■□□□ 1.45
SHMT2-202ENST00000414700 RIMBP3CA6NJZ7 1639 aa24.09■■□□□ 1.45
SHMT2-202ENST00000414700 RIMBP3BA6NNM3 1639 aa24.09■■□□□ 1.45
SHMT2-202ENST00000414700 RIMBP3Q9UFD9 1639 aa24.09■■□□□ 1.45
SHMT2-202ENST00000414700 CCDC18Q5T9S5 1454 aa24.08■■□□□ 1.45
SHMT2-202ENST00000414700 ABCC2Q92887 1545 aa24.07■■□□□ 1.44
SHMT2-202ENST00000414700 LRRC9Q6ZRR7 1453 aa24.06■■□□□ 1.44
SHMT2-202ENST00000414700 MAGI3Q5TCQ9 1506 aa24.05■■□□□ 1.44
SHMT2-202ENST00000414700 ATP10BO94823 1461 aa24.03■■□□□ 1.44
SHMT2-202ENST00000414700 ADCY10Q96PN6 1610 aa24.03■■□□□ 1.44
SHMT2-202ENST00000414700 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.03■■□□□ 1.44
SHMT2-202ENST00000414700 HNRNPUL2Q1KMD3 747 aaKnown RBP24.03■■□□□ 1.44
SHMT2-202ENST00000414700 UHRF1BP1LA0JNW5 1464 aa24■■□□□ 1.43
SHMT2-202ENST00000414700 MTUS2Q5JR59 1369 aa23.98■■□□□ 1.43
SHMT2-202ENST00000414700 CYB5RLQ6IPT4 315 aa23.96■■□□□ 1.43
SHMT2-202ENST00000414700 ZCCHC11Q5TAX3 1644 aaKnown RBP23.94■■□□□ 1.42
SHMT2-202ENST00000414700 EHBP1L1Q8N3D4 1523 aa23.93■■□□□ 1.42
SHMT2-202ENST00000414700 KDM5BQ9UGL1 1544 aa23.93■■□□□ 1.42
SHMT2-202ENST00000414700 CDK11AQ9UQ88 783 aaPredicted RBP23.89■■□□□ 1.41
SHMT2-202ENST00000414700 SUPT6HQ7KZ85 1726 aaKnown RBP23.86■■□□□ 1.41
SHMT2-202ENST00000414700 TROQ12816 1431 aaPredicted RBP23.86■■□□□ 1.41
SHMT2-202ENST00000414700 PHLDB1Q86UU1 1377 aa23.86■■□□□ 1.41
SHMT2-202ENST00000414700 PLEKHD1A6NEE1 506 aa23.86■■□□□ 1.41
SHMT2-202ENST00000414700 NCOA2Q15596 1464 aa23.85■■□□□ 1.41
SHMT2-202ENST00000414700 TRIM26Q12899 539 aaPredicted RBP23.84■■□□□ 1.41
SHMT2-202ENST00000414700 KIF14Q15058 1648 aa23.84■■□□□ 1.41
SHMT2-202ENST00000414700 PCGF6Q9BYE7 350 aa23.79■■□□□ 1.4
SHMT2-202ENST00000414700 NPM1P06748 294 aaKnown RBP eCLIP23.76■■□□□ 1.39
SHMT2-202ENST00000414700 KCNH8Q96L42 1107 aa23.74■■□□□ 1.39
SHMT2-202ENST00000414700 ASXL2Q76L83 1435 aa23.74■■□□□ 1.39
SHMT2-202ENST00000414700 WDR7Q9Y4E6 1490 aa23.72■■□□□ 1.39
SHMT2-202ENST00000414700 DNAJC5Q9H3Z4 198 aa23.71■■□□□ 1.39
SHMT2-202ENST00000414700 MYOM3Q5VTT5 1437 aa23.71■■□□□ 1.39
SHMT2-202ENST00000414700 RRBP1Q9P2E9 1410 aaKnown RBP23.71■■□□□ 1.39
SHMT2-202ENST00000414700 ABCC10Q5T3U5 1492 aa23.71■■□□□ 1.39
SHMT2-202ENST00000414700 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.68■■□□□ 1.38
SHMT2-202ENST00000414700 TTC37Q6PGP7 1564 aa23.68■■□□□ 1.38
SHMT2-202ENST00000414700 FGD6Q6ZV73 1430 aa23.68■■□□□ 1.38
SHMT2-202ENST00000414700 CCNB3Q8WWL7 1395 aa23.67■■□□□ 1.38
SHMT2-202ENST00000414700 CDC42BPAQ5VT25 1732 aa23.66■■□□□ 1.38
SHMT2-202ENST00000414700 GPATCH8Q9UKJ3 1502 aaKnown RBP23.65■■□□□ 1.38
SHMT2-202ENST00000414700 MAPKBP1O60336 1514 aa23.63■■□□□ 1.37
SHMT2-202ENST00000414700 FAM50AQ14320 339 aaKnown RBP23.61■■□□□ 1.37
SHMT2-202ENST00000414700 ITSN2Q9NZM3 1697 aa23.61■■□□□ 1.37
SHMT2-202ENST00000414700 PTPN23Q9H3S7 1636 aa23.6■■□□□ 1.37
SHMT2-202ENST00000414700 CDC42BPBQ9Y5S2 1711 aa23.59■■□□□ 1.37
SHMT2-202ENST00000414700 MIA2Q96PC5 1412 aa23.58■■□□□ 1.36
SHMT2-202ENST00000414700 ZNF644Q9H582 1327 aaPredicted RBP23.57■■□□□ 1.36
SHMT2-202ENST00000414700 PREX2Q70Z35 1606 aa23.57■■□□□ 1.36
SHMT2-202ENST00000414700 CFDP1Q9UEE9 299 aaPredicted RBP23.57■■□□□ 1.36
SHMT2-202ENST00000414700 MYO5CQ9NQX4 1742 aa23.57■■□□□ 1.36
SHMT2-202ENST00000414700 ABCA9Q8IUA7 1624 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms