RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 IGF1RP08069 1367 aa25.6■■□□□ 1.69
CBX3-203ENST00000409747 JPH4Q96JJ6 628 aa25.59■■□□□ 1.69
CBX3-203ENST00000409747 KIAA0586Q9BVV6 1533 aa25.52■■□□□ 1.68
CBX3-203ENST00000409747 CARMIL1Q5VZK9 1371 aa25.46■■□□□ 1.67
CBX3-203ENST00000409747 NPM1P06748 294 aaKnown RBP eCLIP25.32■■□□□ 1.64
CBX3-203ENST00000409747 IQGAP2Q13576 1575 aa25.32■■□□□ 1.64
CBX3-203ENST00000409747 ADCY10Q96PN6 1610 aa25.31■■□□□ 1.64
CBX3-203ENST00000409747 KIF13AQ9H1H9 1805 aa25.3■■□□□ 1.64
CBX3-203ENST00000409747 MAPKBP1O60336 1514 aa25.29■■□□□ 1.64
CBX3-203ENST00000409747 CARMIL2Q6F5E8 1435 aa25.29■■□□□ 1.64
CBX3-203ENST00000409747 RAPGEF2Q9Y4G8 1499 aa25.28■■□□□ 1.64
CBX3-203ENST00000409747 PTPRGP23470 1445 aa25.24■■□□□ 1.63
CBX3-203ENST00000409747 ABCC10Q5T3U5 1492 aa25.22■■□□□ 1.63
CBX3-203ENST00000409747 TNIKQ9UKE5 1360 aa25.22■■□□□ 1.63
CBX3-203ENST00000409747 DIP2BQ9P265 1576 aa25.17■■□□□ 1.62
CBX3-203ENST00000409747 FAM69CQ0P6D2 419 aa25.16■■□□□ 1.62
CBX3-203ENST00000409747 UGGT2Q9NYU1 1516 aa25.15■■□□□ 1.62
CBX3-203ENST00000409747 DISP1Q96F81 1524 aa25.14■■□□□ 1.61
CBX3-203ENST00000409747 ABCC2Q92887 1545 aa25.11■■□□□ 1.61
CBX3-203ENST00000409747 TTBK1Q5TCY1 1321 aaPredicted RBP25.11■■□□□ 1.61
CBX3-203ENST00000409747 CTTNBP2Q8WZ74 1663 aa25.1■■□□□ 1.61
CBX3-203ENST00000409747 UHRF1BP1LA0JNW5 1464 aa25.09■■□□□ 1.61
CBX3-203ENST00000409747 KIAA0556O60303 1618 aa25.08■■□□□ 1.6
CBX3-203ENST00000409747 UACAQ9BZF9 1416 aa25.06■■□□□ 1.6
CBX3-203ENST00000409747 PRXQ9BXM0 1461 aa25.03■■□□□ 1.6
CBX3-203ENST00000409747 PLB1Q6P1J6 1458 aa25.01■■□□□ 1.59
CBX3-203ENST00000409747 GOLGA3Q08378 1498 aa24.99■■□□□ 1.59
CBX3-203ENST00000409747 ASXL2Q76L83 1435 aa24.98■■□□□ 1.59
CBX3-203ENST00000409747 AEBP2Q6ZN18 517 aaPredicted RBP24.96■■□□□ 1.59
CBX3-203ENST00000409747 KDM5BQ9UGL1 1544 aa24.96■■□□□ 1.59
CBX3-203ENST00000409747 TSPOAP1O95153 1857 aa24.95■■□□□ 1.58
CBX3-203ENST00000409747 GLI2P10070 1586 aa24.94■■□□□ 1.58
CBX3-203ENST00000409747 KDM6BO15054 1643 aa24.93■■□□□ 1.58
CBX3-203ENST00000409747 ZCCHC11Q5TAX3 1644 aaKnown RBP24.91■■□□□ 1.58
CBX3-203ENST00000409747 EEA1Q15075 1411 aa24.87■■□□□ 1.57
CBX3-203ENST00000409747 CSRNP3Q8WYN3 585 aa24.85■■□□□ 1.57
CBX3-203ENST00000409747 EPRSP07814 1512 aaKnown RBP24.84■■□□□ 1.57
CBX3-203ENST00000409747 ABCA8O94911 1581 aa24.83■■□□□ 1.56
CBX3-203ENST00000409747 PPRC1Q5VV67 1664 aaKnown RBP24.81■■□□□ 1.56
CBX3-203ENST00000409747 MAP3K4Q9Y6R4 1608 aa24.8■■□□□ 1.56
CBX3-203ENST00000409747 FAM9AQ8IZU1 332 aaPredicted RBP24.8■■□□□ 1.56
CBX3-203ENST00000409747 WDR7Q9Y4E6 1490 aa24.79■■□□□ 1.56
CBX3-203ENST00000409747 TEX14Q8IWB6 1497 aa24.76■■□□□ 1.55
CBX3-203ENST00000409747 SAMD9Q5K651 1589 aa24.73■■□□□ 1.55
CBX3-203ENST00000409747 CFAP43Q8NDM7 1665 aa24.66■■□□□ 1.54
CBX3-203ENST00000409747 P3H3Q8IVL6 736 aa24.66■■□□□ 1.54
CBX3-203ENST00000409747 KIF21BO75037 1637 aa24.64■■□□□ 1.53
CBX3-203ENST00000409747 CD109Q6YHK3 1445 aa24.61■■□□□ 1.53
CBX3-203ENST00000409747 MAGI3Q5TCQ9 1506 aa24.61■■□□□ 1.53
CBX3-203ENST00000409747 RAPGEF6Q8TEU7 1601 aa24.61■■□□□ 1.53
CBX3-203ENST00000409747 KCNH8Q96L42 1107 aa24.59■■□□□ 1.53
CBX3-203ENST00000409747 ATP10BO94823 1461 aa24.59■■□□□ 1.53
CBX3-203ENST00000409747 COL17A1Q9UMD9 1497 aaPredicted RBP24.58■■□□□ 1.53
CBX3-203ENST00000409747 EFCAB5A4FU69 1503 aa24.55■■□□□ 1.52
CBX3-203ENST00000409747 ARID3CA6NKF2 412 aa24.52■■□□□ 1.52
CBX3-203ENST00000409747 FHOD3Q2V2M9 1422 aa24.52■■□□□ 1.52
CBX3-203ENST00000409747 KDM4FA0A1W2PPD8 638 aa24.51■■□□□ 1.51
CBX3-203ENST00000409747 RANGAP1P46060 587 aaPredicted RBP24.5■■□□□ 1.51
CBX3-203ENST00000409747 ABCA9Q8IUA7 1624 aa24.48■■□□□ 1.51
CBX3-203ENST00000409747 NUP153P49790 1475 aaKnown RBP24.48■■□□□ 1.51
CBX3-203ENST00000409747 CHIC1Q5VXU3 224 aa24.47■■□□□ 1.51
CBX3-203ENST00000409747 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.46■■□□□ 1.51
CBX3-203ENST00000409747 HNRNPUL2Q1KMD3 747 aaKnown RBP24.46■■□□□ 1.51
CBX3-203ENST00000409747 ADGRL1O94910 1474 aa24.43■■□□□ 1.5
CBX3-203ENST00000409747 PHLDB1Q86UU1 1377 aa24.41■■□□□ 1.5
CBX3-203ENST00000409747 ARAP3Q8WWN8 1544 aa24.4■■□□□ 1.5
CBX3-203ENST00000409747 UBTFP17480 764 aaKnown RBP24.38■■□□□ 1.49
CBX3-203ENST00000409747 NEO1Q92859 1461 aa24.35■■□□□ 1.49
CBX3-203ENST00000409747 PLEKHD1A6NEE1 506 aa24.34■■□□□ 1.49
CBX3-203ENST00000409747 FMN1Q68DA7 1419 aa24.31■■□□□ 1.48
CBX3-203ENST00000409747 EHMT2Q96KQ7 1210 aa24.3■■□□□ 1.48
CBX3-203ENST00000409747 ARHGAP35Q9NRY4 1499 aa24.27■■□□□ 1.48
CBX3-203ENST00000409747 HECW1Q76N89 1606 aa24.27■■□□□ 1.48
CBX3-203ENST00000409747 CFAP74Q9C0B2 1584 aa24.26■■□□□ 1.47
CBX3-203ENST00000409747 CDK13Q14004 1512 aaKnown RBP24.24■■□□□ 1.47
CBX3-203ENST00000409747 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.24■■□□□ 1.472e-7■■□□□ 11.6
CBX3-203ENST00000409747 TTC37Q6PGP7 1564 aa24.2■■□□□ 1.47
CBX3-203ENST00000409747 FANCAO15360 1455 aa24.2■■□□□ 1.46
CBX3-203ENST00000409747 RAPGEF3O95398 923 aa24.19■■□□□ 1.46
CBX3-203ENST00000409747 FRMPD1Q5SYB0 1578 aa24.19■■□□□ 1.46
CBX3-203ENST00000409747 AKNAQ7Z591 1439 aa24.16■■□□□ 1.46
CBX3-203ENST00000409747 DENND4BO75064 1496 aaPredicted RBP24.16■■□□□ 1.46
CBX3-203ENST00000409747 ATP1B4Q9UN42 357 aaPredicted RBP24.16■■□□□ 1.46
CBX3-203ENST00000409747 CDK11AQ9UQ88 783 aaPredicted RBP24.15■■□□□ 1.46
CBX3-203ENST00000409747 RICTORQ6R327 1708 aa24.13■■□□□ 1.45
CBX3-203ENST00000409747 ARHGEF40Q8TER5 1519 aa24.11■■□□□ 1.45
CBX3-203ENST00000409747 KIF14Q15058 1648 aa24.1■■□□□ 1.45
CBX3-203ENST00000409747 PLCH2O75038 1416 aa24.09■■□□□ 1.45
CBX3-203ENST00000409747 MYO5CQ9NQX4 1742 aa24.08■■□□□ 1.45
CBX3-203ENST00000409747 CLIP1P30622 1438 aa24.07■■□□□ 1.44
CBX3-203ENST00000409747 ZMYM4Q5VZL5 1548 aa24.07■■□□□ 1.44
CBX3-203ENST00000409747 TROQ12816 1431 aaPredicted RBP24.06■■□□□ 1.44
CBX3-203ENST00000409747 ADAMTSL3P82987 1691 aa24.05■■□□□ 1.44
CBX3-203ENST00000409747 HECW2Q9P2P5 1572 aa24.05■■□□□ 1.44
CBX3-203ENST00000409747 LRRIQ1Q96JM4 1722 aa24.04■■□□□ 1.44
CBX3-203ENST00000409747 CCDC18Q5T9S5 1454 aa24.04■■□□□ 1.44
CBX3-203ENST00000409747 CASKIN1Q8WXD9 1431 aa24.03■■□□□ 1.44
CBX3-203ENST00000409747 BCORL1Q5H9F3 1711 aa24.03■■□□□ 1.44
CBX3-203ENST00000409747 PCF11O94913 1555 aaKnown RBP24.03■■□□□ 1.44
CBX3-203ENST00000409747 MAGI2Q86UL8 1455 aa24.02■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms