RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 FAM69CQ0P6D2 419 aa30.04■■■□□ 2.4
CHMP3-203ENST00000409225 ABCC10Q5T3U5 1492 aa29.99■■■□□ 2.39
CHMP3-203ENST00000409225 NPM1P06748 294 aaKnown RBP eCLIP29.99■■■□□ 2.39
CHMP3-203ENST00000409225 RUSC2Q8N2Y8 1516 aa29.97■■■□□ 2.39
CHMP3-203ENST00000409225 MAPKBP1O60336 1514 aa29.92■■■□□ 2.38
CHMP3-203ENST00000409225 DIP2BQ9P265 1576 aa29.9■■■□□ 2.38
CHMP3-203ENST00000409225 ADCY10Q96PN6 1610 aa29.89■■■□□ 2.37
CHMP3-203ENST00000409225 KDM6BO15054 1643 aa29.82■■■□□ 2.36
CHMP3-203ENST00000409225 KDM4FA0A1W2PPD8 638 aa29.78■■■□□ 2.36
CHMP3-203ENST00000409225 KIAA0586Q9BVV6 1533 aa29.76■■■□□ 2.35
CHMP3-203ENST00000409225 TSPOAP1O95153 1857 aa29.75■■■□□ 2.35
CHMP3-203ENST00000409225 IGF1RP08069 1367 aa29.67■■■□□ 2.34
CHMP3-203ENST00000409225 TTBK1Q5TCY1 1321 aaPredicted RBP29.65■■■□□ 2.34
CHMP3-203ENST00000409225 CUL7Q14999 1698 aa29.62■■■□□ 2.33
CHMP3-203ENST00000409225 PTPRGP23470 1445 aa29.62■■■□□ 2.33
CHMP3-203ENST00000409225 KIF27Q86VH2 1401 aa29.6■■■□□ 2.33
CHMP3-203ENST00000409225 ABCC2Q92887 1545 aa29.52■■■□□ 2.32
CHMP3-203ENST00000409225 TNIKQ9UKE5 1360 aa29.51■■■□□ 2.31
CHMP3-203ENST00000409225 ASXL2Q76L83 1435 aa29.5■■■□□ 2.31
CHMP3-203ENST00000409225 CARMIL2Q6F5E8 1435 aa29.49■■■□□ 2.31
CHMP3-203ENST00000409225 ILDR1Q86SU0 546 aaPredicted RBP29.48■■■□□ 2.31
CHMP3-203ENST00000409225 CARMIL1Q5VZK9 1371 aa29.47■■■□□ 2.31
CHMP3-203ENST00000409225 PLB1Q6P1J6 1458 aa29.46■■■□□ 2.31
CHMP3-203ENST00000409225 PPRC1Q5VV67 1664 aaKnown RBP29.45■■■□□ 2.31
CHMP3-203ENST00000409225 GLI2P10070 1586 aa29.43■■■□□ 2.3
CHMP3-203ENST00000409225 ADGRL1O94910 1474 aa29.42■■■□□ 2.3
CHMP3-203ENST00000409225 IQGAP2Q13576 1575 aa29.39■■■□□ 2.3
CHMP3-203ENST00000409225 UHRF1BP1LA0JNW5 1464 aa29.38■■■□□ 2.29
CHMP3-203ENST00000409225 UACAQ9BZF9 1416 aa29.37■■■□□ 2.29
CHMP3-203ENST00000409225 COL17A1Q9UMD9 1497 aaPredicted RBP29.32■■■□□ 2.28
CHMP3-203ENST00000409225 EPRSP07814 1512 aaKnown RBP29.3■■■□□ 2.28
CHMP3-203ENST00000409225 DISP1Q96F81 1524 aa29.3■■■□□ 2.28
CHMP3-203ENST00000409225 MAP3K4Q9Y6R4 1608 aa29.27■■■□□ 2.28
CHMP3-203ENST00000409225 KDM5BQ9UGL1 1544 aa29.25■■■□□ 2.27
CHMP3-203ENST00000409225 TEX14Q8IWB6 1497 aa29.23■■■□□ 2.27
CHMP3-203ENST00000409225 ZCCHC11Q5TAX3 1644 aaKnown RBP29.22■■■□□ 2.27
CHMP3-203ENST00000409225 HECW2Q9P2P5 1572 aa29.18■■■□□ 2.26
CHMP3-203ENST00000409225 UGGT2Q9NYU1 1516 aa29.18■■■□□ 2.26
CHMP3-203ENST00000409225 KIAA0556O60303 1618 aa29.14■■■□□ 2.26
CHMP3-203ENST00000409225 RAPGEF2Q9Y4G8 1499 aa29.13■■■□□ 2.25
CHMP3-203ENST00000409225 WDR7Q9Y4E6 1490 aa29.1■■■□□ 2.25
CHMP3-203ENST00000409225 CD109Q6YHK3 1445 aa29■■■□□ 2.23
CHMP3-203ENST00000409225 KCNH8Q96L42 1107 aa28.99■■■□□ 2.23
CHMP3-203ENST00000409225 MAGI3Q5TCQ9 1506 aa28.97■■■□□ 2.23
CHMP3-203ENST00000409225 CFAP43Q8NDM7 1665 aa28.96■■■□□ 2.23
CHMP3-203ENST00000409225 CTTNBP2Q8WZ74 1663 aa28.9■■■□□ 2.22
CHMP3-203ENST00000409225 ABCA8O94911 1581 aa28.9■■■□□ 2.22
CHMP3-203ENST00000409225 GOLGA3Q08378 1498 aa28.9■■■□□ 2.22
CHMP3-203ENST00000409225 KIF21BO75037 1637 aa28.87■■■□□ 2.21
CHMP3-203ENST00000409225 ARID3CA6NKF2 412 aa28.78■■■□□ 2.2
CHMP3-203ENST00000409225 ARAP3Q8WWN8 1544 aa28.75■■■□□ 2.19
CHMP3-203ENST00000409225 FBXO41Q8TF61 875 aa28.71■■■□□ 2.19
CHMP3-203ENST00000409225 P3H3Q8IVL6 736 aa28.68■■■□□ 2.18
CHMP3-203ENST00000409225 ATP10BO94823 1461 aa28.67■■■□□ 2.18
CHMP3-203ENST00000409225 PTPRMP28827 1452 aa28.66■■■□□ 2.18
CHMP3-203ENST00000409225 PRXQ9BXM0 1461 aa28.66■■■□□ 2.18
CHMP3-203ENST00000409225 FAM9AQ8IZU1 332 aaPredicted RBP28.66■■■□□ 2.18
CHMP3-203ENST00000409225 ADAMTSL3P82987 1691 aa28.64■■■□□ 2.17
CHMP3-203ENST00000409225 RAPGEF3O95398 923 aa28.63■■■□□ 2.17
CHMP3-203ENST00000409225 ABCA9Q8IUA7 1624 aa28.62■■■□□ 2.17
CHMP3-203ENST00000409225 PHLDB1Q86UU1 1377 aa28.62■■■□□ 2.17
CHMP3-203ENST00000409225 ARID4BQ4LE39 1312 aaPredicted RBP28.55■■■□□ 2.16
CHMP3-203ENST00000409225 NEO1Q92859 1461 aa28.54■■■□□ 2.16
CHMP3-203ENST00000409225 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.53■■■□□ 2.16
CHMP3-203ENST00000409225 HNRNPUL2Q1KMD3 747 aaKnown RBP28.53■■■□□ 2.16
CHMP3-203ENST00000409225 BCORL1Q5H9F3 1711 aa28.52■■■□□ 2.16
CHMP3-203ENST00000409225 MADDQ8WXG6 1647 aa28.51■■■□□ 2.15
CHMP3-203ENST00000409225 FRMPD1Q5SYB0 1578 aa28.51■■■□□ 2.15
CHMP3-203ENST00000409225 PCF11O94913 1555 aaKnown RBP28.5■■■□□ 2.15
CHMP3-203ENST00000409225 RAPGEF6Q8TEU7 1601 aa28.49■■■□□ 2.15
CHMP3-203ENST00000409225 SAMD9Q5K651 1589 aa28.46■■■□□ 2.15
CHMP3-203ENST00000409225 LMTK3Q96Q04 1460 aa28.45■■■□□ 2.14
CHMP3-203ENST00000409225 RIMS1Q86UR5 1692 aaKnown RBP28.41■■■□□ 2.14
CHMP3-203ENST00000409225 ARHGEF40Q8TER5 1519 aa28.39■■■□□ 2.14
CHMP3-203ENST00000409225 NUP153P49790 1475 aaKnown RBP28.39■■■□□ 2.13
CHMP3-203ENST00000409225 DENND4BO75064 1496 aaPredicted RBP28.36■■■□□ 2.13
CHMP3-203ENST00000409225 RANGAP1P46060 587 aaPredicted RBP28.36■■■□□ 2.13
CHMP3-203ENST00000409225 PLPPR3Q6T4P5 718 aa28.36■■■□□ 2.13
CHMP3-203ENST00000409225 HSPA2P54652 639 aa28.33■■■□□ 2.13
CHMP3-203ENST00000409225 RICTORQ6R327 1708 aa28.32■■■□□ 2.12
CHMP3-203ENST00000409225 CSRNP3Q8WYN3 585 aa28.32■■■□□ 2.12
CHMP3-203ENST00000409225 AKNAQ7Z591 1439 aa28.32■■■□□ 2.12
CHMP3-203ENST00000409225 PLEKHD1A6NEE1 506 aa28.31■■■□□ 2.12
CHMP3-203ENST00000409225 FHOD3Q2V2M9 1422 aa28.31■■■□□ 2.12
CHMP3-203ENST00000409225 FANCAO15360 1455 aa28.29■■■□□ 2.12
CHMP3-203ENST00000409225 POGZQ7Z3K3 1410 aa28.26■■■□□ 2.12
CHMP3-203ENST00000409225 CFAP74Q9C0B2 1584 aa28.26■■■□□ 2.11
CHMP3-203ENST00000409225 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.24■■■□□ 2.11
CHMP3-203ENST00000409225 YEATS2Q9ULM3 1422 aa28.23■■■□□ 2.11
CHMP3-203ENST00000409225 ZFYVE16Q7Z3T8 1539 aa28.23■■■□□ 2.11
CHMP3-203ENST00000409225 ZMYM4Q5VZL5 1548 aa28.22■■■□□ 2.11
CHMP3-203ENST00000409225 SIGLEC1Q9BZZ2 1709 aa28.21■■■□□ 2.11
CHMP3-203ENST00000409225 TTC37Q6PGP7 1564 aa28.21■■■□□ 2.11
CHMP3-203ENST00000409225 MLECQ14165 292 aa28.21■■■□□ 2.11
CHMP3-203ENST00000409225 EFCAB5A4FU69 1503 aa28.2■■■□□ 2.1
CHMP3-203ENST00000409225 CERKQ8TCT0 537 aa28.17■■■□□ 2.1
CHMP3-203ENST00000409225 HECW1Q76N89 1606 aa28.14■■■□□ 2.1
CHMP3-203ENST00000409225 MAGI2Q86UL8 1455 aa28.14■■■□□ 2.09
CHMP3-203ENST00000409225 FER1L4A9Z1Z3 1794 aa28.13■■■□□ 2.09
CHMP3-203ENST00000409225 SCAPERQ9BY12 1400 aa28.09■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms