RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 NISCHQ9Y2I1 1504 aa42.56■■■■■ 4.4
CHMP3-203ENST00000409225 ABCC9O60706 1549 aa39.01■■■■□ 3.84
CHMP3-203ENST00000409225 CCDC180Q9P1Z9 1646 aa38.38■■■■□ 3.74
CHMP3-203ENST00000409225 DNAJC5BQ9UF47 199 aa37.07■■■■□ 3.52
CHMP3-203ENST00000409225 RB1CC1Q8TDY2 1594 aa36.83■■■■□ 3.49
CHMP3-203ENST00000409225 NACADO15069 1562 aa36.44■■■■□ 3.42
CHMP3-203ENST00000409225 DCAF8L2P0C7V8 631 aa36.26■■■■□ 3.4
CHMP3-203ENST00000409225 PABPN1Q86U42 306 aaKnown RBP eCLIP36.26■■■■□ 3.4
CHMP3-203ENST00000409225 UNC13AQ9UPW8 1703 aa35.99■■■■□ 3.35
CHMP3-203ENST00000409225 BICRAQ9NZM4 1560 aa35.79■■■■□ 3.32
CHMP3-203ENST00000409225 MYO15BQ96JP2 1530 aa35.71■■■■□ 3.31
CHMP3-203ENST00000409225 SHROOM4Q9ULL8 1493 aa35.2■■■■□ 3.23
CHMP3-203ENST00000409225 CECR2Q9BXF3 1484 aa35.18■■■■□ 3.22
CHMP3-203ENST00000409225 CC2D2AQ9P2K1 1620 aa35.17■■■■□ 3.22
CHMP3-203ENST00000409225 ZCCHC6Q5VYS8 1495 aaKnown RBP35.15■■■■□ 3.22
CHMP3-203ENST00000409225 DCAF1Q9Y4B6 1507 aa35.07■■■■□ 3.21
CHMP3-203ENST00000409225 SCRIBQ14160 1630 aa35.03■■■■□ 3.2
CHMP3-203ENST00000409225 EIF4G1Q04637 1599 aaKnown RBP34.96■■■■□ 3.19
CHMP3-203ENST00000409225 DNAJC5Q9H3Z4 198 aa34.41■■■■□ 3.1
CHMP3-203ENST00000409225 CUX2O14529 1486 aa33.8■■■■□ 3
CHMP3-203ENST00000409225 ERCC6Q03468 1493 aa33.72■■■□□ 2.99
CHMP3-203ENST00000409225 NCAPD3P42695 1498 aa33.65■■■□□ 2.98
CHMP3-203ENST00000409225 ATAD2BQ9ULI0 1458 aa33.49■■■□□ 2.95
CHMP3-203ENST00000409225 NESP48681 1621 aa33.36■■■□□ 2.93
CHMP3-203ENST00000409225 SMARCA2P51531 1590 aa33.35■■■□□ 2.93
CHMP3-203ENST00000409225 HMGXB3Q12766 1538 aa33.35■■■□□ 2.93
CHMP3-203ENST00000409225 SMARCA4P51532 1647 aa33.32■■■□□ 2.92
CHMP3-203ENST00000409225 BAZ1BQ9UIG0 1483 aaKnown RBP33.16■■■□□ 2.9
CHMP3-203ENST00000409225 THOC2Q8NI27 1593 aaKnown RBP33.09■■■□□ 2.89
CHMP3-203ENST00000409225 BAZ1AQ9NRL2 1556 aaPredicted RBP33.06■■■□□ 2.88
CHMP3-203ENST00000409225 LAMC3Q9Y6N6 1575 aa32.97■■■□□ 2.87
CHMP3-203ENST00000409225 PEG3Q9GZU2 1588 aa32.96■■■□□ 2.87
CHMP3-203ENST00000409225 KIF21AQ7Z4S6 1674 aa32.88■■■□□ 2.85
CHMP3-203ENST00000409225 PDS5BQ9NTI5 1447 aa32.83■■■□□ 2.85
CHMP3-203ENST00000409225 MROH2BQ7Z745 1585 aa32.81■■■□□ 2.84
CHMP3-203ENST00000409225 TRIM41Q8WV44 630 aa32.76■■■□□ 2.83
CHMP3-203ENST00000409225 CADPSQ9ULU8 1353 aa32.62■■■□□ 2.81
CHMP3-203ENST00000409225 MRC2Q9UBG0 1479 aa32.59■■■□□ 2.81
CHMP3-203ENST00000409225 WDR62O43379 1518 aa32.51■■■□□ 2.79
CHMP3-203ENST00000409225 WIZO95785 1651 aa32.4■■■□□ 2.78
CHMP3-203ENST00000409225 CEP164Q9UPV0 1460 aa32.35■■■□□ 2.77
CHMP3-203ENST00000409225 FANCD2Q9BXW9 1451 aa32.27■■■□□ 2.76
CHMP3-203ENST00000409225 OSCARQ8IYS5 282 aa32.19■■■□□ 2.74
CHMP3-203ENST00000409225 CFTRP13569 1480 aa32.12■■■□□ 2.73
CHMP3-203ENST00000409225 URB2Q14146 1524 aaKnown RBP32.04■■■□□ 2.72
CHMP3-203ENST00000409225 TOP2AP11388 1531 aaKnown RBP31.93■■■□□ 2.7
CHMP3-203ENST00000409225 RSF1Q96T23 1441 aaPredicted RBP31.92■■■□□ 2.7
CHMP3-203ENST00000409225 RIMBP3CA6NJZ7 1639 aa31.83■■■□□ 2.69
CHMP3-203ENST00000409225 RIMBP3BA6NNM3 1639 aa31.83■■■□□ 2.69
CHMP3-203ENST00000409225 RIMBP3Q9UFD9 1639 aa31.83■■■□□ 2.69
CHMP3-203ENST00000409225 ZNF608Q9ULD9 1512 aaPredicted RBP31.75■■■□□ 2.67
CHMP3-203ENST00000409225 PRDM2Q13029 1718 aa31.73■■■□□ 2.67
CHMP3-203ENST00000409225 IFT140Q96RY7 1462 aa31.72■■■□□ 2.67
CHMP3-203ENST00000409225 ARHGEF11O15085 1522 aa31.67■■■□□ 2.66
CHMP3-203ENST00000409225 TOPBP1Q92547 1522 aa31.59■■■□□ 2.65
CHMP3-203ENST00000409225 CCDC88BA6NC98 1476 aa31.59■■■□□ 2.65
CHMP3-203ENST00000409225 EIF4G3O43432 1585 aaKnown RBP31.52■■■□□ 2.64
CHMP3-203ENST00000409225 CYB5RLQ6IPT4 315 aa31.5■■■□□ 2.63
CHMP3-203ENST00000409225 ABCC8Q09428 1581 aa31.44■■■□□ 2.62
CHMP3-203ENST00000409225 DNMBPQ6XZF7 1577 aa31.42■■■□□ 2.62
CHMP3-203ENST00000409225 AQRO60306 1485 aaKnown RBP eCLIP31.4■■■□□ 2.624e-6■■□□□ 13.9
CHMP3-203ENST00000409225 CHD1O14646 1710 aa31.39■■■□□ 2.62
CHMP3-203ENST00000409225 TRHP20396 242 aaPredicted RBP31.36■■■□□ 2.61
CHMP3-203ENST00000409225 FBLN2P98095 1184 aa31.34■■■□□ 2.61
CHMP3-203ENST00000409225 ARAP1Q96P48 1450 aa31.33■■■□□ 2.61
CHMP3-203ENST00000409225 TARBP1Q13395 1621 aaKnown RBP31.33■■■□□ 2.61
CHMP3-203ENST00000409225 POLA1P09884 1462 aaPredicted RBP31.24■■■□□ 2.59
CHMP3-203ENST00000409225 RAD54L2Q9Y4B4 1467 aa31.16■■■□□ 2.58
CHMP3-203ENST00000409225 TDRD9Q8NDG6 1382 aaKnown RBP31.13■■■□□ 2.57
CHMP3-203ENST00000409225 SOGA1O94964 1423 aa31.09■■■□□ 2.57
CHMP3-203ENST00000409225 SNAPC4Q5SXM2 1469 aa31.06■■■□□ 2.56
CHMP3-203ENST00000409225 CLASP1Q7Z460 1538 aa31.01■■■□□ 2.55
CHMP3-203ENST00000409225 CHMP7Q8WUX9 453 aaPredicted RBP30.99■■■□□ 2.55
CHMP3-203ENST00000409225 FGD5Q6ZNL6 1462 aa30.97■■■□□ 2.55
CHMP3-203ENST00000409225 SYNJ1O43426 1573 aa30.95■■■□□ 2.54
CHMP3-203ENST00000409225 WDR97A6NE52 1622 aa30.94■■■□□ 2.54
CHMP3-203ENST00000409225 MAGI1Q96QZ7 1491 aaPredicted RBP30.91■■■□□ 2.54
CHMP3-203ENST00000409225 GRIN2BQ13224 1484 aa30.88■■■□□ 2.53
CHMP3-203ENST00000409225 CUX1P39880 1505 aa30.86■■■□□ 2.53
CHMP3-203ENST00000409225 AEBP2Q6ZN18 517 aaPredicted RBP30.84■■■□□ 2.53
CHMP3-203ENST00000409225 SYNJ2O15056 1496 aa30.83■■■□□ 2.53
CHMP3-203ENST00000409225 GAPVD1Q14C86 1478 aa30.74■■■□□ 2.51
CHMP3-203ENST00000409225 PBRM1Q86U86 1689 aa30.71■■■□□ 2.51
CHMP3-203ENST00000409225 ABCA5Q8WWZ7 1642 aa30.57■■■□□ 2.48
CHMP3-203ENST00000409225 ABCA10Q8WWZ4 1543 aa30.57■■■□□ 2.48
CHMP3-203ENST00000409225 ERCC6L2Q5T890 1561 aa30.53■■■□□ 2.48
CHMP3-203ENST00000409225 GRIN2AQ12879 1464 aa30.47■■■□□ 2.47
CHMP3-203ENST00000409225 CEP170Q5SW79 1584 aa30.41■■■□□ 2.46
CHMP3-203ENST00000409225 ADAMTS12P58397 1594 aa30.39■■■□□ 2.46
CHMP3-203ENST00000409225 NUP160Q12769 1436 aa30.39■■■□□ 2.45
CHMP3-203ENST00000409225 WRNQ14191 1432 aaPredicted RBP eCLIP30.35■■■□□ 2.45
CHMP3-203ENST00000409225 SHROOM2Q13796 1616 aa30.29■■■□□ 2.44
CHMP3-203ENST00000409225 FHAD1B1AJZ9 1412 aa30.28■■■□□ 2.44
CHMP3-203ENST00000409225 KIF13AQ9H1H9 1805 aa30.2■■■□□ 2.43
CHMP3-203ENST00000409225 TOP2BQ02880 1626 aa30.19■■■□□ 2.42
CHMP3-203ENST00000409225 BIVM-ERCC5R4GMW8 1640 aa30.19■■■□□ 2.42
CHMP3-203ENST00000409225 SUPT5HO00267 1087 aaKnown RBP30.18■■■□□ 2.42
CHMP3-203ENST00000409225 PRG4Q92954 1404 aaPredicted RBP30.17■■■□□ 2.42
CHMP3-203ENST00000409225 ERICH3Q5RHP9 1530 aa30.16■■■□□ 2.42
CHMP3-203ENST00000409225 JPH4Q96JJ6 628 aa30.09■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms