RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 JPH4Q96JJ6 628 aa28.92■■■□□ 2.22
CUX2-202ENST00000397643 ABCC10Q5T3U5 1492 aa28.81■■■□□ 2.2
CUX2-202ENST00000397643 MAPKBP1O60336 1514 aa28.79■■■□□ 2.2
CUX2-202ENST00000397643 ADCY10Q96PN6 1610 aa28.77■■■□□ 2.2
CUX2-202ENST00000397643 DIP2BQ9P265 1576 aa28.75■■■□□ 2.19
CUX2-202ENST00000397643 FAM69CQ0P6D2 419 aa28.72■■■□□ 2.19
CUX2-202ENST00000397643 KIAA0586Q9BVV6 1533 aa28.7■■■□□ 2.19
CUX2-202ENST00000397643 IGF1RP08069 1367 aa28.67■■■□□ 2.18
CUX2-202ENST00000397643 NPM1P06748 294 aaKnown RBP eCLIP28.65■■■□□ 2.18
CUX2-202ENST00000397643 CUL7Q14999 1698 aa28.64■■■□□ 2.17
CUX2-202ENST00000397643 KIF27Q86VH2 1401 aa28.6■■■□□ 2.17
CUX2-202ENST00000397643 KDM6BO15054 1643 aa28.54■■■□□ 2.16
CUX2-202ENST00000397643 TSPOAP1O95153 1857 aa28.49■■■□□ 2.15
CUX2-202ENST00000397643 PTPRGP23470 1445 aa28.47■■■□□ 2.15
CUX2-202ENST00000397643 CARMIL1Q5VZK9 1371 aa28.45■■■□□ 2.14
CUX2-202ENST00000397643 KDM4FA0A1W2PPD8 638 aa28.44■■■□□ 2.14
CUX2-202ENST00000397643 ABCC2Q92887 1545 aa28.42■■■□□ 2.14
CUX2-202ENST00000397643 TNIKQ9UKE5 1360 aa28.4■■■□□ 2.14
CUX2-202ENST00000397643 IQGAP2Q13576 1575 aa28.38■■■□□ 2.13
CUX2-202ENST00000397643 CARMIL2Q6F5E8 1435 aa28.37■■■□□ 2.13
CUX2-202ENST00000397643 PPRC1Q5VV67 1664 aaKnown RBP28.35■■■□□ 2.13
CUX2-202ENST00000397643 ASXL2Q76L83 1435 aa28.35■■■□□ 2.13
CUX2-202ENST00000397643 GLI2P10070 1586 aa28.34■■■□□ 2.13
CUX2-202ENST00000397643 UHRF1BP1LA0JNW5 1464 aa28.34■■■□□ 2.13
CUX2-202ENST00000397643 TTBK1Q5TCY1 1321 aaPredicted RBP28.33■■■□□ 2.13
CUX2-202ENST00000397643 PLB1Q6P1J6 1458 aa28.32■■■□□ 2.12
CUX2-202ENST00000397643 DISP1Q96F81 1524 aa28.32■■■□□ 2.12
CUX2-202ENST00000397643 UACAQ9BZF9 1416 aa28.27■■■□□ 2.12
CUX2-202ENST00000397643 UGGT2Q9NYU1 1516 aa28.22■■■□□ 2.11
CUX2-202ENST00000397643 KDM5BQ9UGL1 1544 aa28.22■■■□□ 2.11
CUX2-202ENST00000397643 EPRSP07814 1512 aaKnown RBP28.19■■■□□ 2.1
CUX2-202ENST00000397643 COL17A1Q9UMD9 1497 aaPredicted RBP28.19■■■□□ 2.1
CUX2-202ENST00000397643 MAP3K4Q9Y6R4 1608 aa28.18■■■□□ 2.1
CUX2-202ENST00000397643 RAPGEF2Q9Y4G8 1499 aa28.15■■■□□ 2.1
CUX2-202ENST00000397643 KIAA0556O60303 1618 aa28.15■■■□□ 2.1
CUX2-202ENST00000397643 ZCCHC11Q5TAX3 1644 aaKnown RBP28.15■■■□□ 2.1
CUX2-202ENST00000397643 ADGRL1O94910 1474 aa28.14■■■□□ 2.09
CUX2-202ENST00000397643 TEX14Q8IWB6 1497 aa28.06■■■□□ 2.08
CUX2-202ENST00000397643 WDR7Q9Y4E6 1490 aa28.02■■■□□ 2.08
CUX2-202ENST00000397643 CTTNBP2Q8WZ74 1663 aa27.97■■■□□ 2.07
CUX2-202ENST00000397643 ABCA8O94911 1581 aa27.93■■■□□ 2.06
CUX2-202ENST00000397643 ILDR1Q86SU0 546 aaPredicted RBP27.92■■■□□ 2.06
CUX2-202ENST00000397643 MAGI3Q5TCQ9 1506 aa27.9■■■□□ 2.06
CUX2-202ENST00000397643 CFAP43Q8NDM7 1665 aa27.88■■■□□ 2.05
CUX2-202ENST00000397643 HECW2Q9P2P5 1572 aa27.88■■■□□ 2.05
CUX2-202ENST00000397643 GOLGA3Q08378 1498 aa27.88■■■□□ 2.05
CUX2-202ENST00000397643 CD109Q6YHK3 1445 aa27.84■■■□□ 2.05
CUX2-202ENST00000397643 PRXQ9BXM0 1461 aa27.83■■■□□ 2.04
CUX2-202ENST00000397643 KCNH8Q96L42 1107 aa27.77■■■□□ 2.04
CUX2-202ENST00000397643 KIF21BO75037 1637 aa27.7■■■□□ 2.03
CUX2-202ENST00000397643 ARAP3Q8WWN8 1544 aa27.68■■■□□ 2.02
CUX2-202ENST00000397643 ATP10BO94823 1461 aa27.67■■■□□ 2.02
CUX2-202ENST00000397643 ABCA9Q8IUA7 1624 aa27.62■■■□□ 2.01
CUX2-202ENST00000397643 ARID3CA6NKF2 412 aa27.6■■■□□ 2.01
CUX2-202ENST00000397643 SAMD9Q5K651 1589 aa27.59■■■□□ 2.01
CUX2-202ENST00000397643 P3H3Q8IVL6 736 aa27.56■■■□□ 2
CUX2-202ENST00000397643 PHLDB1Q86UU1 1377 aa27.53■■■□□ 2
CUX2-202ENST00000397643 ADAMTSL3P82987 1691 aa27.52■■■□□ 2
CUX2-202ENST00000397643 RAPGEF6Q8TEU7 1601 aa27.52■■■□□ 2
CUX2-202ENST00000397643 FRMPD1Q5SYB0 1578 aa27.5■■□□□ 1.99
CUX2-202ENST00000397643 NEO1Q92859 1461 aa27.5■■□□□ 1.99
CUX2-202ENST00000397643 PTPRMP28827 1452 aa27.48■■□□□ 1.99
CUX2-202ENST00000397643 RAPGEF3O95398 923 aa27.46■■□□□ 1.99
CUX2-202ENST00000397643 NUP153P49790 1475 aaKnown RBP27.45■■□□□ 1.99
CUX2-202ENST00000397643 FAM9AQ8IZU1 332 aaPredicted RBP27.45■■□□□ 1.98
CUX2-202ENST00000397643 CSRNP3Q8WYN3 585 aa27.41■■□□□ 1.98
CUX2-202ENST00000397643 BCORL1Q5H9F3 1711 aa27.41■■□□□ 1.98
CUX2-202ENST00000397643 MADDQ8WXG6 1647 aa27.37■■□□□ 1.97
CUX2-202ENST00000397643 FHOD3Q2V2M9 1422 aa27.35■■□□□ 1.97
CUX2-202ENST00000397643 ARHGEF40Q8TER5 1519 aa27.35■■□□□ 1.97
CUX2-202ENST00000397643 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.32■■□□□ 1.96
CUX2-202ENST00000397643 HNRNPUL2Q1KMD3 747 aaKnown RBP27.32■■□□□ 1.96
CUX2-202ENST00000397643 RICTORQ6R327 1708 aa27.32■■□□□ 1.96
CUX2-202ENST00000397643 PCF11O94913 1555 aaKnown RBP27.31■■□□□ 1.96
CUX2-202ENST00000397643 LMTK3Q96Q04 1460 aa27.29■■□□□ 1.96
CUX2-202ENST00000397643 FBXO41Q8TF61 875 aa27.28■■□□□ 1.96
CUX2-202ENST00000397643 DENND4BO75064 1496 aaPredicted RBP27.27■■□□□ 1.96
CUX2-202ENST00000397643 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.26■■□□□ 1.96
CUX2-202ENST00000397643 EEA1Q15075 1411 aa27.25■■□□□ 1.95
CUX2-202ENST00000397643 AKNAQ7Z591 1439 aa27.24■■□□□ 1.95
CUX2-202ENST00000397643 ARID4BQ4LE39 1312 aaPredicted RBP27.24■■□□□ 1.95
CUX2-202ENST00000397643 TTC37Q6PGP7 1564 aa27.24■■□□□ 1.95
CUX2-202ENST00000397643 FANCAO15360 1455 aa27.24■■□□□ 1.95
CUX2-202ENST00000397643 RIMS1Q86UR5 1692 aaKnown RBP27.24■■□□□ 1.95
CUX2-202ENST00000397643 CFAP74Q9C0B2 1584 aa27.23■■□□□ 1.95
CUX2-202ENST00000397643 ZMYM4Q5VZL5 1548 aa27.22■■□□□ 1.95
CUX2-202ENST00000397643 RANGAP1P46060 587 aaPredicted RBP27.22■■□□□ 1.95
CUX2-202ENST00000397643 PLEKHD1A6NEE1 506 aa27.21■■□□□ 1.95
CUX2-202ENST00000397643 SIGLEC1Q9BZZ2 1709 aa27.21■■□□□ 1.95
CUX2-202ENST00000397643 EFCAB5A4FU69 1503 aa27.2■■□□□ 1.94
CUX2-202ENST00000397643 YEATS2Q9ULM3 1422 aa27.16■■□□□ 1.94
CUX2-202ENST00000397643 ZFYVE16Q7Z3T8 1539 aa27.15■■□□□ 1.94
CUX2-202ENST00000397643 CDK13Q14004 1512 aaKnown RBP27.14■■□□□ 1.94
CUX2-202ENST00000397643 MAGI2Q86UL8 1455 aa27.11■■□□□ 1.93
CUX2-202ENST00000397643 HECW1Q76N89 1606 aa27.1■■□□□ 1.93
CUX2-202ENST00000397643 POGZQ7Z3K3 1410 aa27.09■■□□□ 1.93
CUX2-202ENST00000397643 PLCH2O75038 1416 aa27.06■■□□□ 1.92
CUX2-202ENST00000397643 HSPA2P54652 639 aa27.05■■□□□ 1.92
CUX2-202ENST00000397643 SCAPERQ9BY12 1400 aa27.03■■□□□ 1.92
CUX2-202ENST00000397643 FER1L4A9Z1Z3 1794 aa27.02■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms