RNA–Protein interactions for RNA: ENST00000397443.6

CPNE1-204, Transcript of copine 1, humanhuman

APPRIS P1 TSL 5

Gene CPNE1, Length 1,928 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-204ENST00000397443 CTTNBP2Q8WZ74 1663 aa33.89■■■■□ 3.02
CPNE1-204ENST00000397443 CHD1O14646 1710 aa33.87■■■■□ 3.01
CPNE1-204ENST00000397443 CLIP1P30622 1438 aa33.84■■■■□ 3.01
CPNE1-204ENST00000397443 CEP170Q5SW79 1584 aa33.8■■■■□ 3
CPNE1-204ENST00000397443 NUP160Q12769 1436 aa33.73■■■□□ 2.99
CPNE1-204ENST00000397443 IQGAP2Q13576 1575 aa33.71■■■□□ 2.99
CPNE1-204ENST00000397443 KIAA0586Q9BVV6 1533 aa33.7■■■□□ 2.99
CPNE1-204ENST00000397443 P3H3Q8IVL6 736 aa33.67■■■□□ 2.98
CPNE1-204ENST00000397443 ARHGAP35Q9NRY4 1499 aa33.65■■■□□ 2.98
CPNE1-204ENST00000397443 ARAP1Q96P48 1450 aa33.56■■■□□ 2.96
CPNE1-204ENST00000397443 JPH4Q96JJ6 628 aa33.52■■■□□ 2.96
CPNE1-204ENST00000397443 FHOD3Q2V2M9 1422 aa33.52■■■□□ 2.96
CPNE1-204ENST00000397443 EFCAB5A4FU69 1503 aa33.51■■■□□ 2.96
CPNE1-204ENST00000397443 UGGT2Q9NYU1 1516 aa33.5■■■□□ 2.95
CPNE1-204ENST00000397443 SAMD9Q5K651 1589 aa33.48■■■□□ 2.95
CPNE1-204ENST00000397443 OSCARQ8IYS5 282 aa33.44■■■□□ 2.94
CPNE1-204ENST00000397443 TTBK1Q5TCY1 1321 aaPredicted RBP33.43■■■□□ 2.94
CPNE1-204ENST00000397443 VPS8Q8N3P4 1428 aa33.42■■■□□ 2.94
CPNE1-204ENST00000397443 CLASP1Q7Z460 1538 aa33.42■■■□□ 2.94
CPNE1-204ENST00000397443 DISP1Q96F81 1524 aa33.41■■■□□ 2.94
CPNE1-204ENST00000397443 KIAA0556O60303 1618 aa33.38■■■□□ 2.93
CPNE1-204ENST00000397443 PRG4Q92954 1404 aaPredicted RBP33.36■■■□□ 2.93
CPNE1-204ENST00000397443 CARMIL2Q6F5E8 1435 aa33.33■■■□□ 2.93
CPNE1-204ENST00000397443 SHROOM2Q13796 1616 aa33.32■■■□□ 2.92
CPNE1-204ENST00000397443 ATP1B4Q9UN42 357 aaPredicted RBP33.28■■■□□ 2.92
CPNE1-204ENST00000397443 FMN1Q68DA7 1419 aa33.25■■■□□ 2.91
CPNE1-204ENST00000397443 ERCC6L2Q5T890 1561 aa33.24■■■□□ 2.91
CPNE1-204ENST00000397443 PPARGC1BQ86YN6 1023 aaKnown RBP33.24■■■□□ 2.91
CPNE1-204ENST00000397443 PCF11O94913 1555 aaKnown RBP33.2■■■□□ 2.91
CPNE1-204ENST00000397443 APLP2Q06481 763 aa33.16■■■□□ 2.9
CPNE1-204ENST00000397443 CASKIN1Q8WXD9 1431 aa33.12■■■□□ 2.89
CPNE1-204ENST00000397443 FYCO1Q9BQS8 1478 aa33.09■■■□□ 2.89
CPNE1-204ENST00000397443 PTPRGP23470 1445 aa33.09■■■□□ 2.89
CPNE1-204ENST00000397443 ARID3CA6NKF2 412 aa33.06■■■□□ 2.88
CPNE1-204ENST00000397443 PLB1Q6P1J6 1458 aa33.05■■■□□ 2.88
CPNE1-204ENST00000397443 RAPGEF6Q8TEU7 1601 aa32.99■■■□□ 2.87
CPNE1-204ENST00000397443 HECW1Q76N89 1606 aa32.97■■■□□ 2.87
CPNE1-204ENST00000397443 LRRIQ1Q96JM4 1722 aa32.95■■■□□ 2.87
CPNE1-204ENST00000397443 KANK4Q5T7N3 995 aaPredicted RBP32.94■■■□□ 2.86
CPNE1-204ENST00000397443 TIAM1Q13009 1591 aa32.93■■■□□ 2.86
CPNE1-204ENST00000397443 ABCA8O94911 1581 aa32.91■■■□□ 2.86
CPNE1-204ENST00000397443 NUP153P49790 1475 aaKnown RBP32.91■■■□□ 2.86
CPNE1-204ENST00000397443 CDK13Q14004 1512 aaKnown RBP32.88■■■□□ 2.85
CPNE1-204ENST00000397443 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.88■■■□□ 2.85
CPNE1-204ENST00000397443 HNRNPUL2Q1KMD3 747 aaKnown RBP32.88■■■□□ 2.85
CPNE1-204ENST00000397443 EPRSP07814 1512 aaKnown RBP32.88■■■□□ 2.85
CPNE1-204ENST00000397443 CFAP43Q8NDM7 1665 aa32.87■■■□□ 2.85
CPNE1-204ENST00000397443 ARHGEF11O15085 1522 aa32.87■■■□□ 2.85
CPNE1-204ENST00000397443 UACAQ9BZF9 1416 aa32.87■■■□□ 2.85
CPNE1-204ENST00000397443 MAP3K1Q13233 1512 aa32.83■■■□□ 2.85
CPNE1-204ENST00000397443 CCDC18Q5T9S5 1454 aa32.83■■■□□ 2.85
CPNE1-204ENST00000397443 LRRC9Q6ZRR7 1453 aa32.78■■■□□ 2.84
CPNE1-204ENST00000397443 ABCC2Q92887 1545 aa32.76■■■□□ 2.83
CPNE1-204ENST00000397443 RIMBP3CA6NJZ7 1639 aa32.76■■■□□ 2.83
CPNE1-204ENST00000397443 RIMBP3BA6NNM3 1639 aa32.76■■■□□ 2.83
CPNE1-204ENST00000397443 RIMBP3Q9UFD9 1639 aa32.76■■■□□ 2.83
CPNE1-204ENST00000397443 MTUS2Q5JR59 1369 aa32.75■■■□□ 2.83
CPNE1-204ENST00000397443 ATP10BO94823 1461 aa32.71■■■□□ 2.83
CPNE1-204ENST00000397443 MAGI3Q5TCQ9 1506 aa32.69■■■□□ 2.82
CPNE1-204ENST00000397443 ADCY10Q96PN6 1610 aa32.67■■■□□ 2.82
CPNE1-204ENST00000397443 CYB5RLQ6IPT4 315 aa32.67■■■□□ 2.82
CPNE1-204ENST00000397443 UHRF1BP1LA0JNW5 1464 aa32.66■■■□□ 2.82
CPNE1-204ENST00000397443 CDK11AQ9UQ88 783 aaPredicted RBP32.65■■■□□ 2.82
CPNE1-204ENST00000397443 EHBP1L1Q8N3D4 1523 aa32.61■■■□□ 2.81
CPNE1-204ENST00000397443 TRIM26Q12899 539 aaPredicted RBP32.59■■■□□ 2.81
CPNE1-204ENST00000397443 PLEKHD1A6NEE1 506 aa32.57■■■□□ 2.81
CPNE1-204ENST00000397443 ZCCHC11Q5TAX3 1644 aaKnown RBP32.57■■■□□ 2.81
CPNE1-204ENST00000397443 KDM5BQ9UGL1 1544 aa32.56■■■□□ 2.8
CPNE1-204ENST00000397443 PCGF6Q9BYE7 350 aa32.55■■■□□ 2.8
CPNE1-204ENST00000397443 SUPT6HQ7KZ85 1726 aaKnown RBP32.52■■■□□ 2.8
CPNE1-204ENST00000397443 TROQ12816 1431 aaPredicted RBP32.52■■■□□ 2.8
CPNE1-204ENST00000397443 NCOA2Q15596 1464 aa32.5■■■□□ 2.79
CPNE1-204ENST00000397443 PHLDB1Q86UU1 1377 aa32.5■■■□□ 2.79
CPNE1-204ENST00000397443 NPM1P06748 294 aaKnown RBP eCLIP32.48■■■□□ 2.79
CPNE1-204ENST00000397443 KIF14Q15058 1648 aa32.43■■■□□ 2.78
CPNE1-204ENST00000397443 KCNH8Q96L42 1107 aa32.42■■■□□ 2.78
CPNE1-204ENST00000397443 ASXL2Q76L83 1435 aa32.34■■■□□ 2.77
CPNE1-204ENST00000397443 CCNB3Q8WWL7 1395 aa32.32■■■□□ 2.77
CPNE1-204ENST00000397443 MYOM3Q5VTT5 1437 aa32.32■■■□□ 2.76
CPNE1-204ENST00000397443 WDR7Q9Y4E6 1490 aa32.31■■■□□ 2.76
CPNE1-204ENST00000397443 RRBP1Q9P2E9 1410 aaKnown RBP32.3■■■□□ 2.76
CPNE1-204ENST00000397443 FAM50AQ14320 339 aaKnown RBP32.29■■■□□ 2.76
CPNE1-204ENST00000397443 FGD6Q6ZV73 1430 aa32.27■■■□□ 2.76
CPNE1-204ENST00000397443 ABCC10Q5T3U5 1492 aa32.25■■■□□ 2.75
CPNE1-204ENST00000397443 DNAJC5Q9H3Z4 198 aa32.25■■■□□ 2.75
CPNE1-204ENST00000397443 TTC37Q6PGP7 1564 aa32.22■■■□□ 2.75
CPNE1-204ENST00000397443 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32.22■■■□□ 2.751e-38■■□□□ 13.2
CPNE1-204ENST00000397443 GPATCH8Q9UKJ3 1502 aaKnown RBP32.21■■■□□ 2.75
CPNE1-204ENST00000397443 ITGAEP38570 1179 aa32.2■■■□□ 2.75
CPNE1-204ENST00000397443 CFDP1Q9UEE9 299 aaPredicted RBP32.18■■■□□ 2.74
CPNE1-204ENST00000397443 CDC42BPAQ5VT25 1732 aa32.17■■■□□ 2.74
CPNE1-204ENST00000397443 ZNF777Q9ULD5 760 aaPredicted RBP32.16■■■□□ 2.74
CPNE1-204ENST00000397443 ITSN2Q9NZM3 1697 aa32.16■■■□□ 2.74
CPNE1-204ENST00000397443 PTPN23Q9H3S7 1636 aa32.15■■■□□ 2.74
CPNE1-204ENST00000397443 MAPKBP1O60336 1514 aa32.13■■■□□ 2.73
CPNE1-204ENST00000397443 MIA2Q96PC5 1412 aa32.13■■■□□ 2.73
CPNE1-204ENST00000397443 ZNF644Q9H582 1327 aaPredicted RBP32.12■■■□□ 2.73
CPNE1-204ENST00000397443 MYO5CQ9NQX4 1742 aa32.08■■■□□ 2.73
CPNE1-204ENST00000397443 PREX2Q70Z35 1606 aa32.06■■■□□ 2.72
CPNE1-204ENST00000397443 CDC42BPBQ9Y5S2 1711 aa32.06■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms