RNA–Protein interactions for RNA: ENST00000396345.1

HOXA9-202, Transcript of homeobox A9, humanhuman

TSL 2 BASIC

Gene HOXA9, Length 797 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-202ENST00000396345 RIMBP3CA6NJZ7 1639 aa31.74■■■□□ 2.67
HOXA9-202ENST00000396345 RIMBP3BA6NNM3 1639 aa31.74■■■□□ 2.67
HOXA9-202ENST00000396345 RIMBP3Q9UFD9 1639 aa31.74■■■□□ 2.67
HOXA9-202ENST00000396345 SHROOM2Q13796 1616 aa31.71■■■□□ 2.67
HOXA9-202ENST00000396345 JPH4Q96JJ6 628 aa31.7■■■□□ 2.67
HOXA9-202ENST00000396345 KIF21BO75037 1637 aa31.67■■■□□ 2.66
HOXA9-202ENST00000396345 IQGAP2Q13576 1575 aa31.64■■■□□ 2.66
HOXA9-202ENST00000396345 CTTNBP2Q8WZ74 1663 aa31.62■■■□□ 2.65
HOXA9-202ENST00000396345 PRG4Q92954 1404 aaPredicted RBP31.61■■■□□ 2.65
HOXA9-202ENST00000396345 ERCC6L2Q5T890 1561 aa31.58■■■□□ 2.65
HOXA9-202ENST00000396345 EHMT2Q96KQ7 1210 aa31.54■■■□□ 2.64
HOXA9-202ENST00000396345 ARAP1Q96P48 1450 aa31.53■■■□□ 2.64
HOXA9-202ENST00000396345 GOLGA3Q08378 1498 aa31.52■■■□□ 2.64
HOXA9-202ENST00000396345 CYB5RLQ6IPT4 315 aa31.49■■■□□ 2.63
HOXA9-202ENST00000396345 UGGT2Q9NYU1 1516 aa31.48■■■□□ 2.63
HOXA9-202ENST00000396345 UBTFP17480 764 aaKnown RBP31.45■■■□□ 2.63
HOXA9-202ENST00000396345 CARMIL2Q6F5E8 1435 aa31.44■■■□□ 2.62
HOXA9-202ENST00000396345 DISP1Q96F81 1524 aa31.39■■■□□ 2.62
HOXA9-202ENST00000396345 KIAA0556O60303 1618 aa31.33■■■□□ 2.61
HOXA9-202ENST00000396345 TNIKQ9UKE5 1360 aa31.31■■■□□ 2.6
HOXA9-202ENST00000396345 RANGAP1P46060 587 aaPredicted RBP31.29■■■□□ 2.6
HOXA9-202ENST00000396345 PTPRGP23470 1445 aa31.27■■■□□ 2.6
HOXA9-202ENST00000396345 TTBK1Q5TCY1 1321 aaPredicted RBP31.26■■■□□ 2.6
HOXA9-202ENST00000396345 SAMD9Q5K651 1589 aa31.22■■■□□ 2.59
HOXA9-202ENST00000396345 P3H3Q8IVL6 736 aa31.2■■■□□ 2.59
HOXA9-202ENST00000396345 EFCAB5A4FU69 1503 aa31.15■■■□□ 2.58
HOXA9-202ENST00000396345 LOC105371045A0A1W2PR82 267 aa31.13■■■□□ 2.57
HOXA9-202ENST00000396345 FHOD3Q2V2M9 1422 aa31.07■■■□□ 2.57
HOXA9-202ENST00000396345 ADCY10Q96PN6 1610 aa31.07■■■□□ 2.56
HOXA9-202ENST00000396345 UACAQ9BZF9 1416 aa31.07■■■□□ 2.56
HOXA9-202ENST00000396345 ARHGAP35Q9NRY4 1499 aa31.04■■■□□ 2.56
HOXA9-202ENST00000396345 TRHP20396 242 aaPredicted RBP31.04■■■□□ 2.56
HOXA9-202ENST00000396345 UHRF1BP1LA0JNW5 1464 aa31.01■■■□□ 2.56
HOXA9-202ENST00000396345 ABCC2Q92887 1545 aa31■■■□□ 2.55
HOXA9-202ENST00000396345 PLB1Q6P1J6 1458 aa31■■■□□ 2.55
HOXA9-202ENST00000396345 NPM1P06748 294 aaKnown RBP eCLIP30.99■■■□□ 2.55
HOXA9-202ENST00000396345 CLIP1P30622 1438 aa30.98■■■□□ 2.55
HOXA9-202ENST00000396345 ABCA8O94911 1581 aa30.97■■■□□ 2.55
HOXA9-202ENST00000396345 CEP162Q5TB80 1403 aa30.9■■■□□ 2.54
HOXA9-202ENST00000396345 RAPGEF6Q8TEU7 1601 aa30.87■■■□□ 2.53
HOXA9-202ENST00000396345 FMN1Q68DA7 1419 aa30.87■■■□□ 2.53
HOXA9-202ENST00000396345 KDM5BQ9UGL1 1544 aa30.86■■■□□ 2.53
HOXA9-202ENST00000396345 ZCCHC11Q5TAX3 1644 aaKnown RBP30.81■■■□□ 2.52
HOXA9-202ENST00000396345 MAPKBP1O60336 1514 aa30.8■■■□□ 2.52
HOXA9-202ENST00000396345 ARID3CA6NKF2 412 aa30.77■■■□□ 2.52
HOXA9-202ENST00000396345 NUP153P49790 1475 aaKnown RBP30.76■■■□□ 2.51
HOXA9-202ENST00000396345 ATP10BO94823 1461 aa30.73■■■□□ 2.51
HOXA9-202ENST00000396345 ASXL2Q76L83 1435 aa30.72■■■□□ 2.51
HOXA9-202ENST00000396345 ATP1B4Q9UN42 357 aaPredicted RBP30.71■■■□□ 2.51
HOXA9-202ENST00000396345 HECW1Q76N89 1606 aa30.69■■■□□ 2.5
HOXA9-202ENST00000396345 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.67■■■□□ 2.5
HOXA9-202ENST00000396345 HNRNPUL2Q1KMD3 747 aaKnown RBP30.67■■■□□ 2.5
HOXA9-202ENST00000396345 CASKIN1Q8WXD9 1431 aa30.66■■■□□ 2.5
HOXA9-202ENST00000396345 PCF11O94913 1555 aaKnown RBP30.65■■■□□ 2.5
HOXA9-202ENST00000396345 ABCC10Q5T3U5 1492 aa30.63■■■□□ 2.49
HOXA9-202ENST00000396345 WDR7Q9Y4E6 1490 aa30.61■■■□□ 2.49
HOXA9-202ENST00000396345 EPRSP07814 1512 aaKnown RBP30.6■■■□□ 2.49
HOXA9-202ENST00000396345 DIP2BQ9P265 1576 aa30.59■■■□□ 2.49
HOXA9-202ENST00000396345 FYCO1Q9BQS8 1478 aa30.59■■■□□ 2.49
HOXA9-202ENST00000396345 FAM69CQ0P6D2 419 aa30.59■■■□□ 2.49
HOXA9-202ENST00000396345 KIF13AQ9H1H9 1805 aa30.59■■■□□ 2.49
HOXA9-202ENST00000396345 CDK13Q14004 1512 aaKnown RBP30.58■■■□□ 2.49
HOXA9-202ENST00000396345 LRRIQ1Q96JM4 1722 aa30.53■■■□□ 2.48
HOXA9-202ENST00000396345 PLEKHD1A6NEE1 506 aa30.52■■■□□ 2.48
HOXA9-202ENST00000396345 KCNH8Q96L42 1107 aa30.52■■■□□ 2.48
HOXA9-202ENST00000396345 CCDC18Q5T9S5 1454 aa30.5■■■□□ 2.47
HOXA9-202ENST00000396345 VPS8Q8N3P4 1428 aa30.5■■■□□ 2.47
HOXA9-202ENST00000396345 GLI2P10070 1586 aa30.49■■■□□ 2.47
HOXA9-202ENST00000396345 CDK11AQ9UQ88 783 aaPredicted RBP30.47■■■□□ 2.47
HOXA9-202ENST00000396345 MAP3K4Q9Y6R4 1608 aa30.36■■■□□ 2.45
HOXA9-202ENST00000396345 TSPOAP1O95153 1857 aa30.36■■■□□ 2.45
HOXA9-202ENST00000396345 TROQ12816 1431 aaPredicted RBP30.35■■■□□ 2.45
HOXA9-202ENST00000396345 CFAP43Q8NDM7 1665 aa30.33■■■□□ 2.45
HOXA9-202ENST00000396345 ABCA9Q8IUA7 1624 aa30.32■■■□□ 2.44
HOXA9-202ENST00000396345 CD109Q6YHK3 1445 aa30.31■■■□□ 2.44
HOXA9-202ENST00000396345 MAGI3Q5TCQ9 1506 aa30.29■■■□□ 2.44
HOXA9-202ENST00000396345 PPRC1Q5VV67 1664 aaKnown RBP30.26■■■□□ 2.43
HOXA9-202ENST00000396345 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.26■■■□□ 2.43
HOXA9-202ENST00000396345 KIF14Q15058 1648 aa30.25■■■□□ 2.43
HOXA9-202ENST00000396345 TIAM1Q13009 1591 aa30.24■■■□□ 2.43
HOXA9-202ENST00000396345 MTUS2Q5JR59 1369 aa30.23■■■□□ 2.43
HOXA9-202ENST00000396345 TTC37Q6PGP7 1564 aa30.22■■■□□ 2.43
HOXA9-202ENST00000396345 TEX14Q8IWB6 1497 aa30.21■■■□□ 2.43
HOXA9-202ENST00000396345 APLP2Q06481 763 aa30.2■■■□□ 2.43
HOXA9-202ENST00000396345 MAP3K1Q13233 1512 aa30.2■■■□□ 2.42
HOXA9-202ENST00000396345 EHBP1L1Q8N3D4 1523 aa30.17■■■□□ 2.42
HOXA9-202ENST00000396345 LRRC9Q6ZRR7 1453 aa30.12■■■□□ 2.41
HOXA9-202ENST00000396345 PLCH2O75038 1416 aa30.1■■■□□ 2.41
HOXA9-202ENST00000396345 MYO5CQ9NQX4 1742 aa30.1■■■□□ 2.41
HOXA9-202ENST00000396345 KANK4Q5T7N3 995 aaPredicted RBP30.09■■■□□ 2.41
HOXA9-202ENST00000396345 NEO1Q92859 1461 aa30.05■■■□□ 2.4
HOXA9-202ENST00000396345 SUPT6HQ7KZ85 1726 aaKnown RBP30.04■■■□□ 2.4
HOXA9-202ENST00000396345 KDM6BO15054 1643 aa30.04■■■□□ 2.4
HOXA9-202ENST00000396345 ARAP3Q8WWN8 1544 aa30.03■■■□□ 2.4
HOXA9-202ENST00000396345 FANCAO15360 1455 aa30.03■■■□□ 2.4
HOXA9-202ENST00000396345 PHLDB1Q86UU1 1377 aa30.03■■■□□ 2.4
HOXA9-202ENST00000396345 AEBP2Q6ZN18 517 aaPredicted RBP30.02■■■□□ 2.4
HOXA9-202ENST00000396345 CFAP74Q9C0B2 1584 aa30.02■■■□□ 2.4
HOXA9-202ENST00000396345 CCNB3Q8WWL7 1395 aa30.01■■■□□ 2.39
HOXA9-202ENST00000396345 CDC42BPAQ5VT25 1732 aa30■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms