RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 RRBP1Q9P2E9 1410 aaKnown RBP13.67□□□□□ -0.22
TDP1-202ENST00000393452 HNRNPUL2Q1KMD3 747 aaKnown RBP13.67□□□□□ -0.22
TDP1-202ENST00000393452 FHAD1B1AJZ9 1412 aa13.67□□□□□ -0.22
TDP1-202ENST00000393452 TIAM1Q13009 1591 aa13.66□□□□□ -0.22
TDP1-202ENST00000393452 MRC2Q9UBG0 1479 aa13.65□□□□□ -0.22
TDP1-202ENST00000393452 PCF11O94913 1555 aaKnown RBP13.61□□□□□ -0.23
TDP1-202ENST00000393452 CFAP43Q8NDM7 1665 aa13.61□□□□□ -0.23
TDP1-202ENST00000393452 AQRO60306 1485 aaKnown RBP eCLIP13.61□□□□□ -0.232e-7■■■■□ 20.2
TDP1-202ENST00000393452 LRRC9Q6ZRR7 1453 aa13.6□□□□□ -0.23
TDP1-202ENST00000393452 FHOD3Q2V2M9 1422 aa13.59□□□□□ -0.23
TDP1-202ENST00000393452 FYCO1Q9BQS8 1478 aa13.59□□□□□ -0.23
TDP1-202ENST00000393452 PBRM1Q86U86 1689 aa13.59□□□□□ -0.23
TDP1-202ENST00000393452 SAMD9Q5K651 1589 aa13.58□□□□□ -0.24
TDP1-202ENST00000393452 CCNB3Q8WWL7 1395 aa13.58□□□□□ -0.24
TDP1-202ENST00000393452 CASKIN1Q8WXD9 1431 aa13.57□□□□□ -0.24
TDP1-202ENST00000393452 WDR62O43379 1518 aa13.57□□□□□ -0.24
TDP1-202ENST00000393452 FMN1Q68DA7 1419 aa13.56□□□□□ -0.24
TDP1-202ENST00000393452 P3H3Q8IVL6 736 aa13.55□□□□□ -0.24
TDP1-202ENST00000393452 ADAMTS12P58397 1594 aa13.53□□□□□ -0.24
TDP1-202ENST00000393452 SNAPC4Q5SXM2 1469 aa13.53□□□□□ -0.24
TDP1-202ENST00000393452 IFT140Q96RY7 1462 aa13.53□□□□□ -0.24
TDP1-202ENST00000393452 GRIN2BQ13224 1484 aa13.52□□□□□ -0.25
TDP1-202ENST00000393452 CLSPNQ9HAW4 1339 aa13.51□□□□□ -0.25
TDP1-202ENST00000393452 PHLDB1Q86UU1 1377 aa13.51□□□□□ -0.25
TDP1-202ENST00000393452 DHX57Q6P158 1386 aaKnown RBP13.49□□□□□ -0.25
TDP1-202ENST00000393452 THOC2Q8NI27 1593 aaKnown RBP13.48□□□□□ -0.25
TDP1-202ENST00000393452 ZNF608Q9ULD9 1512 aaPredicted RBP13.47□□□□□ -0.25
TDP1-202ENST00000393452 IQGAP2Q13576 1575 aa13.46□□□□□ -0.25
TDP1-202ENST00000393452 LRRIQ1Q96JM4 1722 aa13.46□□□□□ -0.26
TDP1-202ENST00000393452 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.44□□□□□ -0.26
TDP1-202ENST00000393452 ERCC6Q03468 1493 aa13.43□□□□□ -0.26
TDP1-202ENST00000393452 ATP1B4Q9UN42 357 aaPredicted RBP13.43□□□□□ -0.26
TDP1-202ENST00000393452 EIF4G3O43432 1585 aaKnown RBP13.42□□□□□ -0.26
TDP1-202ENST00000393452 UGGT2Q9NYU1 1516 aa13.42□□□□□ -0.26
TDP1-202ENST00000393452 KIAA0586Q9BVV6 1533 aa13.38□□□□□ -0.27
TDP1-202ENST00000393452 ZNF316A6NFI3 1004 aaPredicted RBP13.38□□□□□ -0.27
TDP1-202ENST00000393452 MTUS2Q5JR59 1369 aa13.38□□□□□ -0.27
TDP1-202ENST00000393452 RAB3GAP2Q9H2M9 1393 aa13.38□□□□□ -0.27
TDP1-202ENST00000393452 ITGAEP38570 1179 aa13.38□□□□□ -0.27
TDP1-202ENST00000393452 CCDC18Q5T9S5 1454 aa13.37□□□□□ -0.27
TDP1-202ENST00000393452 FGD6Q6ZV73 1430 aa13.37□□□□□ -0.27
TDP1-202ENST00000393452 SETD5Q9C0A6 1442 aa13.37□□□□□ -0.27
TDP1-202ENST00000393452 EHBP1L1Q8N3D4 1523 aa13.37□□□□□ -0.27
TDP1-202ENST00000393452 HECW1Q76N89 1606 aa13.37□□□□□ -0.27
TDP1-202ENST00000393452 GRIN2AQ12879 1464 aa13.37□□□□□ -0.27
TDP1-202ENST00000393452 DIEXFQ68CQ4 756 aaKnown RBP13.37□□□□□ -0.27
TDP1-202ENST00000393452 MAGI1Q96QZ7 1491 aaPredicted RBP13.36□□□□□ -0.27
TDP1-202ENST00000393452 FAM50AQ14320 339 aaKnown RBP13.36□□□□□ -0.27
TDP1-202ENST00000393452 SUPT6HQ7KZ85 1726 aaKnown RBP13.35□□□□□ -0.27
TDP1-202ENST00000393452 NCOA2Q15596 1464 aa13.35□□□□□ -0.27
TDP1-202ENST00000393452 ARHGEF11O15085 1522 aa13.34□□□□□ -0.27
TDP1-202ENST00000393452 MAGI3Q5TCQ9 1506 aa13.33□□□□□ -0.27
TDP1-202ENST00000393452 MYOM3Q5VTT5 1437 aa13.33□□□□□ -0.28
TDP1-202ENST00000393452 KIAA0556O60303 1618 aa13.33□□□□□ -0.28
TDP1-202ENST00000393452 EPRSP07814 1512 aaKnown RBP13.33□□□□□ -0.28
TDP1-202ENST00000393452 DISP1Q96F81 1524 aa13.33□□□□□ -0.28
TDP1-202ENST00000393452 SYNJ2O15056 1496 aa13.32□□□□□ -0.28
TDP1-202ENST00000393452 MAPKBP1O60336 1514 aa13.32□□□□□ -0.28
TDP1-202ENST00000393452 CEP170Q5SW79 1584 aa13.28□□□□□ -0.28
TDP1-202ENST00000393452 CDK13Q14004 1512 aaKnown RBP13.26□□□□□ -0.29
TDP1-202ENST00000393452 NUP160Q12769 1436 aa13.26□□□□□ -0.29
TDP1-202ENST00000393452 PTPN23Q9H3S7 1636 aa13.26□□□□□ -0.29
TDP1-202ENST00000393452 PTPRKQ15262 1439 aa13.26□□□□□ -0.29
TDP1-202ENST00000393452 TCOF1Q13428 1488 aaKnown RBP13.25□□□□□ -0.29
TDP1-202ENST00000393452 HFM1A2PYH4 1435 aa13.25□□□□□ -0.29
TDP1-202ENST00000393452 CHMP7Q8WUX9 453 aaPredicted RBP13.25□□□□□ -0.29
TDP1-202ENST00000393452 RAPGEF6Q8TEU7 1601 aa13.24□□□□□ -0.29
TDP1-202ENST00000393452 NUP153P49790 1475 aaKnown RBP13.23□□□□□ -0.29
TDP1-202ENST00000393452 MIA2Q96PC5 1412 aa13.22□□□□□ -0.29
TDP1-202ENST00000393452 NAIPQ13075 1403 aa13.2□□□□□ -0.3
TDP1-202ENST00000393452 CARMIL2Q6F5E8 1435 aa13.18□□□□□ -0.3
TDP1-202ENST00000393452 UACAQ9BZF9 1416 aa13.18□□□□□ -0.3
TDP1-202ENST00000393452 AKNAQ7Z591 1439 aa13.17□□□□□ -0.3
TDP1-202ENST00000393452 JPH4Q96JJ6 628 aa13.17□□□□□ -0.3
TDP1-202ENST00000393452 TIMELESSQ9UNS1 1208 aa13.17□□□□□ -0.3
TDP1-202ENST00000393452 FBLN2P98095 1184 aa13.16□□□□□ -0.3
TDP1-202ENST00000393452 GCC2Q8IWJ2 1684 aa13.15□□□□□ -0.3
TDP1-202ENST00000393452 PLB1Q6P1J6 1458 aa13.15□□□□□ -0.3
TDP1-202ENST00000393452 CDK11AQ9UQ88 783 aaPredicted RBP13.14□□□□□ -0.31
TDP1-202ENST00000393452 ARID3CA6NKF2 412 aa13.14□□□□□ -0.31
TDP1-202ENST00000393452 TROQ12816 1431 aaPredicted RBP13.13□□□□□ -0.31
TDP1-202ENST00000393452 SIN3AQ96ST3 1273 aa13.13□□□□□ -0.31
TDP1-202ENST00000393452 ADCY10Q96PN6 1610 aa13.12□□□□□ -0.31
TDP1-202ENST00000393452 ABCA8O94911 1581 aa13.11□□□□□ -0.31
TDP1-202ENST00000393452 MIER1Q8N108 512 aa13.1□□□□□ -0.31
TDP1-202ENST00000393452 DNMT1P26358 1616 aaKnown RBP13.1□□□□□ -0.31
TDP1-202ENST00000393452 PRG4Q92954 1404 aaPredicted RBP13.09□□□□□ -0.31
TDP1-202ENST00000393452 ROCK1Q13464 1354 aa13.08□□□□□ -0.32
TDP1-202ENST00000393452 DAPK1P53355 1430 aa13.08□□□□□ -0.32
TDP1-202ENST00000393452 NEUROD1Q13562 356 aa13.08□□□□□ -0.32
TDP1-202ENST00000393452 ITSN2Q9NZM3 1697 aa13.08□□□□□ -0.32
TDP1-202ENST00000393452 RRP7BPQ9NSQ0 103 aa13.07□□□□□ -0.32
TDP1-202ENST00000393452 CHD1O14646 1710 aa13.07□□□□□ -0.32
TDP1-202ENST00000393452 KDM6BO15054 1643 aa13.06□□□□□ -0.32
TDP1-202ENST00000393452 CHIC2Q9UKJ5 165 aa13.06□□□□□ -0.32
TDP1-202ENST00000393452 ABCC5O15440 1437 aa13.06□□□□□ -0.32
TDP1-202ENST00000393452 ACIN1Q9UKV3 1341 aaKnown RBP13.06□□□□□ -0.32
TDP1-202ENST00000393452 KIF14Q15058 1648 aa13.06□□□□□ -0.32
TDP1-202ENST00000393452 PPP1R15AO75807 674 aaPredicted RBP13.06□□□□□ -0.32
TDP1-202ENST00000393452 GPATCH8Q9UKJ3 1502 aaKnown RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms