RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 NISCHQ9Y2I1 1504 aa19.69■□□□□ 0.74
TDP1-202ENST00000393452 CCDC180Q9P1Z9 1646 aa16.99■□□□□ 0.31
TDP1-202ENST00000393452 ZCCHC6Q5VYS8 1495 aaKnown RBP16.62■□□□□ 0.25
TDP1-202ENST00000393452 SHROOM4Q9ULL8 1493 aa16.32■□□□□ 0.2
TDP1-202ENST00000393452 DCAF1Q9Y4B6 1507 aa16.29■□□□□ 0.2
TDP1-202ENST00000393452 DCAF8L2P0C7V8 631 aa16.12■□□□□ 0.17
TDP1-202ENST00000393452 MYO15BQ96JP2 1530 aa15.96■□□□□ 0.14
TDP1-202ENST00000393452 SUPT5HO00267 1087 aaKnown RBP15.87■□□□□ 0.13
TDP1-202ENST00000393452 ABCC9O60706 1549 aa15.75■□□□□ 0.11
TDP1-202ENST00000393452 NACADO15069 1562 aa15.73■□□□□ 0.11
TDP1-202ENST00000393452 SCRIBQ14160 1630 aa15.68■□□□□ 0.1
TDP1-202ENST00000393452 RB1CC1Q8TDY2 1594 aa15.5■□□□□ 0.07
TDP1-202ENST00000393452 RSF1Q96T23 1441 aaPredicted RBP15.43■□□□□ 0.06
TDP1-202ENST00000393452 CHIC1Q5VXU3 224 aa15.42■□□□□ 0.06
TDP1-202ENST00000393452 CECR2Q9BXF3 1484 aa15.3■□□□□ 0.04
TDP1-202ENST00000393452 UNC13AQ9UPW8 1703 aa15.26■□□□□ 0.03
TDP1-202ENST00000393452 MROH2BQ7Z745 1585 aa15.24■□□□□ 0.03
TDP1-202ENST00000393452 BAZ1AQ9NRL2 1556 aaPredicted RBP15.17■□□□□ 0.02
TDP1-202ENST00000393452 WIZO95785 1651 aa15.14■□□□□ 0.01
TDP1-202ENST00000393452 BICRAQ9NZM4 1560 aa15.08■□□□□ 0
TDP1-202ENST00000393452 SMARCA4P51532 1647 aa15.06■□□□□ 0
TDP1-202ENST00000393452 TOP2AP11388 1531 aaKnown RBP14.97□□□□□ -0.01
TDP1-202ENST00000393452 PABPN1Q86U42 306 aaKnown RBP eCLIP14.93□□□□□ -0.02
TDP1-202ENST00000393452 EIF4G1Q04637 1599 aaKnown RBP14.9□□□□□ -0.02
TDP1-202ENST00000393452 TRIM41Q8WV44 630 aa14.89□□□□□ -0.03
TDP1-202ENST00000393452 PEG3Q9GZU2 1588 aa14.88□□□□□ -0.03
TDP1-202ENST00000393452 SMARCA2P51531 1590 aa14.85□□□□□ -0.03
TDP1-202ENST00000393452 LOC105371045A0A1W2PR82 267 aa14.84□□□□□ -0.03
TDP1-202ENST00000393452 CCDC88BA6NC98 1476 aa14.84□□□□□ -0.03
TDP1-202ENST00000393452 ATAD2BQ9ULI0 1458 aa14.72□□□□□ -0.05
TDP1-202ENST00000393452 ABCC8Q09428 1581 aa14.65□□□□□ -0.06
TDP1-202ENST00000393452 BAZ1BQ9UIG0 1483 aaKnown RBP14.65□□□□□ -0.06
TDP1-202ENST00000393452 FAM9AQ8IZU1 332 aaPredicted RBP14.63□□□□□ -0.07
TDP1-202ENST00000393452 HMGXB3Q12766 1538 aa14.54□□□□□ -0.08
TDP1-202ENST00000393452 NCAPD3P42695 1498 aa14.54□□□□□ -0.08
TDP1-202ENST00000393452 PCGF6Q9BYE7 350 aa14.53□□□□□ -0.08
TDP1-202ENST00000393452 WRNQ14191 1432 aaPredicted RBP eCLIP14.5□□□□□ -0.09
TDP1-202ENST00000393452 DNAJC5BQ9UF47 199 aa14.48□□□□□ -0.09
TDP1-202ENST00000393452 EEA1Q15075 1411 aa14.47□□□□□ -0.09
TDP1-202ENST00000393452 SOGA1O94964 1423 aa14.45□□□□□ -0.1
TDP1-202ENST00000393452 SYNJ1O43426 1573 aa14.44□□□□□ -0.1
TDP1-202ENST00000393452 TRIM26Q12899 539 aaPredicted RBP14.44□□□□□ -0.1
TDP1-202ENST00000393452 HRCP23327 699 aa14.42□□□□□ -0.1
TDP1-202ENST00000393452 EHMT2Q96KQ7 1210 aa14.41□□□□□ -0.1
TDP1-202ENST00000393452 RUSC2Q8N2Y8 1516 aa14.39□□□□□ -0.11
TDP1-202ENST00000393452 CSRNP3Q8WYN3 585 aa14.37□□□□□ -0.11
TDP1-202ENST00000393452 TOP2BQ02880 1626 aa14.35□□□□□ -0.11
TDP1-202ENST00000393452 TNIKQ9UKE5 1360 aa14.33□□□□□ -0.12
TDP1-202ENST00000393452 CFTRP13569 1480 aa14.32□□□□□ -0.12
TDP1-202ENST00000393452 BIVM-ERCC5R4GMW8 1640 aa14.32□□□□□ -0.12
TDP1-202ENST00000393452 GOLGA3Q08378 1498 aa14.29□□□□□ -0.12
TDP1-202ENST00000393452 CEP162Q5TB80 1403 aa14.28□□□□□ -0.12
TDP1-202ENST00000393452 KIF21BO75037 1637 aa14.28□□□□□ -0.12
TDP1-202ENST00000393452 CC2D2AQ9P2K1 1620 aa14.27□□□□□ -0.13
TDP1-202ENST00000393452 PRDM2Q13029 1718 aa14.26□□□□□ -0.13
TDP1-202ENST00000393452 CEP164Q9UPV0 1460 aa14.26□□□□□ -0.13
TDP1-202ENST00000393452 CUX1P39880 1505 aa14.22□□□□□ -0.13
TDP1-202ENST00000393452 UBTFP17480 764 aaKnown RBP14.2□□□□□ -0.14
TDP1-202ENST00000393452 CADPSQ9ULU8 1353 aa14.19□□□□□ -0.14
TDP1-202ENST00000393452 RAPGEF2Q9Y4G8 1499 aa14.14□□□□□ -0.15
TDP1-202ENST00000393452 PRXQ9BXM0 1461 aa14.11□□□□□ -0.15
TDP1-202ENST00000393452 ERICH3Q5RHP9 1530 aa14.11□□□□□ -0.15
TDP1-202ENST00000393452 PPARGC1BQ86YN6 1023 aaKnown RBP14.09□□□□□ -0.15
TDP1-202ENST00000393452 KIF27Q86VH2 1401 aa14.08□□□□□ -0.15
TDP1-202ENST00000393452 CLIP1P30622 1438 aa14.08□□□□□ -0.16
TDP1-202ENST00000393452 FANCD2Q9BXW9 1451 aa14.03□□□□□ -0.16
TDP1-202ENST00000393452 ZEB1P37275 1124 aaPredicted RBP14.02□□□□□ -0.16
TDP1-202ENST00000393452 VPS8Q8N3P4 1428 aa14.02□□□□□ -0.17
TDP1-202ENST00000393452 FGD5Q6ZNL6 1462 aa14□□□□□ -0.17
TDP1-202ENST00000393452 CUX2O14529 1486 aa13.97□□□□□ -0.17
TDP1-202ENST00000393452 LAMC3Q9Y6N6 1575 aa13.97□□□□□ -0.17
TDP1-202ENST00000393452 DNMBPQ6XZF7 1577 aa13.96□□□□□ -0.17
TDP1-202ENST00000393452 NESP48681 1621 aa13.96□□□□□ -0.17
TDP1-202ENST00000393452 IGF1RP08069 1367 aa13.95□□□□□ -0.18
TDP1-202ENST00000393452 TOPBP1Q92547 1522 aa13.92□□□□□ -0.18
TDP1-202ENST00000393452 ARAP1Q96P48 1450 aa13.91□□□□□ -0.18
TDP1-202ENST00000393452 ABCA10Q8WWZ4 1543 aa13.89□□□□□ -0.19
TDP1-202ENST00000393452 POLA1P09884 1462 aaPredicted RBP13.89□□□□□ -0.19
TDP1-202ENST00000393452 TTBK1Q5TCY1 1321 aaPredicted RBP13.89□□□□□ -0.19
TDP1-202ENST00000393452 CARMIL1Q5VZK9 1371 aa13.87□□□□□ -0.19
TDP1-202ENST00000393452 RANGAP1P46060 587 aaPredicted RBP13.85□□□□□ -0.19
TDP1-202ENST00000393452 RAD54L2Q9Y4B4 1467 aa13.85□□□□□ -0.19
TDP1-202ENST00000393452 URB2Q14146 1524 aaKnown RBP13.85□□□□□ -0.19
TDP1-202ENST00000393452 ARHGAP35Q9NRY4 1499 aa13.84□□□□□ -0.19
TDP1-202ENST00000393452 PDS5BQ9NTI5 1447 aa13.84□□□□□ -0.19
TDP1-202ENST00000393452 APLP2Q06481 763 aa13.83□□□□□ -0.19
TDP1-202ENST00000393452 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.82□□□□□ -0.2
TDP1-202ENST00000393452 WDR97A6NE52 1622 aa13.82□□□□□ -0.2
TDP1-202ENST00000393452 DNAJC5Q9H3Z4 198 aa13.79□□□□□ -0.2
TDP1-202ENST00000393452 CUL7Q14999 1698 aa13.79□□□□□ -0.2
TDP1-202ENST00000393452 KIF21AQ7Z4S6 1674 aa13.78□□□□□ -0.2
TDP1-202ENST00000393452 CCER1Q8TC90 406 aaPredicted RBP13.78□□□□□ -0.2
TDP1-202ENST00000393452 ABCA5Q8WWZ7 1642 aa13.75□□□□□ -0.21
TDP1-202ENST00000393452 MAP3K1Q13233 1512 aa13.71□□□□□ -0.21
TDP1-202ENST00000393452 KANK4Q5T7N3 995 aaPredicted RBP13.71□□□□□ -0.21
TDP1-202ENST00000393452 TARBP1Q13395 1621 aaKnown RBP13.69□□□□□ -0.22
TDP1-202ENST00000393452 CTTNBP2Q8WZ74 1663 aa13.69□□□□□ -0.22
TDP1-202ENST00000393452 GAPVD1Q14C86 1478 aa13.69□□□□□ -0.22
TDP1-202ENST00000393452 TDRD9Q8NDG6 1382 aaKnown RBP13.67□□□□□ -0.22
TDP1-202ENST00000393452 EFCAB5A4FU69 1503 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms