RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 AQRO60306 1485 aaKnown RBP eCLIP38.71■■■■□ 3.791e-7■■□□□ 12.9
SHOX2-201ENST00000389589 GRIN2BQ13224 1484 aa38.7■■■■□ 3.79
SHOX2-201ENST00000389589 FHAD1B1AJZ9 1412 aa38.67■■■■□ 3.78
SHOX2-201ENST00000389589 ADAMTS12P58397 1594 aa38.65■■■■□ 3.78
SHOX2-201ENST00000389589 ZNF608Q9ULD9 1512 aaPredicted RBP38.61■■■■□ 3.77
SHOX2-201ENST00000389589 EIF4G3O43432 1585 aaKnown RBP38.54■■■■□ 3.76
SHOX2-201ENST00000389589 MAP3K1Q13233 1512 aa38.53■■■■□ 3.76
SHOX2-201ENST00000389589 ZEB1P37275 1124 aaPredicted RBP38.5■■■■□ 3.75
SHOX2-201ENST00000389589 SAMD9Q5K651 1589 aa38.48■■■■□ 3.75
SHOX2-201ENST00000389589 FHOD3Q2V2M9 1422 aa38.44■■■■□ 3.74
SHOX2-201ENST00000389589 TIAM1Q13009 1591 aa38.43■■■■□ 3.74
SHOX2-201ENST00000389589 PCF11O94913 1555 aaKnown RBP38.41■■■■□ 3.74
SHOX2-201ENST00000389589 KANK4Q5T7N3 995 aaPredicted RBP38.4■■■■□ 3.74
SHOX2-201ENST00000389589 P3H3Q8IVL6 736 aa38.39■■■■□ 3.74
SHOX2-201ENST00000389589 SNAPC4Q5SXM2 1469 aa38.37■■■■□ 3.73
SHOX2-201ENST00000389589 FYCO1Q9BQS8 1478 aa38.36■■■■□ 3.73
SHOX2-201ENST00000389589 FMN1Q68DA7 1419 aa38.36■■■■□ 3.73
SHOX2-201ENST00000389589 IQGAP2Q13576 1575 aa38.35■■■■□ 3.73
SHOX2-201ENST00000389589 CFAP43Q8NDM7 1665 aa38.35■■■■□ 3.73
SHOX2-201ENST00000389589 MAGI1Q96QZ7 1491 aaPredicted RBP38.33■■■■□ 3.73
SHOX2-201ENST00000389589 CASKIN1Q8WXD9 1431 aa38.33■■■■□ 3.73
SHOX2-201ENST00000389589 GRIN2AQ12879 1464 aa38.23■■■■□ 3.71
SHOX2-201ENST00000389589 LRRC9Q6ZRR7 1453 aa38.22■■■■□ 3.71
SHOX2-201ENST00000389589 RRBP1Q9P2E9 1410 aaKnown RBP38.18■■■■□ 3.7
SHOX2-201ENST00000389589 SYNJ2O15056 1496 aa38.17■■■■□ 3.7
SHOX2-201ENST00000389589 KIAA0586Q9BVV6 1533 aa38.16■■■■□ 3.7
SHOX2-201ENST00000389589 UGGT2Q9NYU1 1516 aa38.16■■■■□ 3.7
SHOX2-201ENST00000389589 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP38.14■■■■□ 3.7
SHOX2-201ENST00000389589 CCER1Q8TC90 406 aaPredicted RBP38.11■■■■□ 3.69
SHOX2-201ENST00000389589 HNRNPUL2Q1KMD3 747 aaKnown RBP38.08■■■■□ 3.69
SHOX2-201ENST00000389589 ATP1B4Q9UN42 357 aaPredicted RBP38.08■■■■□ 3.69
SHOX2-201ENST00000389589 CHMP7Q8WUX9 453 aaPredicted RBP38.03■■■■□ 3.68
SHOX2-201ENST00000389589 CCNB3Q8WWL7 1395 aa38.01■■■■□ 3.68
SHOX2-201ENST00000389589 LRRIQ1Q96JM4 1722 aa38■■■■□ 3.67
SHOX2-201ENST00000389589 CEP170Q5SW79 1584 aa37.98■■■■□ 3.67
SHOX2-201ENST00000389589 KIAA0556O60303 1618 aa37.95■■■■□ 3.67
SHOX2-201ENST00000389589 HECW1Q76N89 1606 aa37.93■■■■□ 3.66
SHOX2-201ENST00000389589 NUP160Q12769 1436 aa37.91■■■■□ 3.66
SHOX2-201ENST00000389589 DISP1Q96F81 1524 aa37.9■■■■□ 3.66
SHOX2-201ENST00000389589 CCDC18Q5T9S5 1454 aa37.9■■■■□ 3.66
SHOX2-201ENST00000389589 PHLDB1Q86UU1 1377 aa37.86■■■■□ 3.65
SHOX2-201ENST00000389589 FBLN2P98095 1184 aa37.85■■■■□ 3.65
SHOX2-201ENST00000389589 MTUS2Q5JR59 1369 aa37.82■■■■□ 3.64
SHOX2-201ENST00000389589 EHBP1L1Q8N3D4 1523 aa37.78■■■■□ 3.64
SHOX2-201ENST00000389589 SUPT6HQ7KZ85 1726 aaKnown RBP37.75■■■■□ 3.63
SHOX2-201ENST00000389589 EPRSP07814 1512 aaKnown RBP37.73■■■■□ 3.63
SHOX2-201ENST00000389589 CARMIL2Q6F5E8 1435 aa37.69■■■■□ 3.62
SHOX2-201ENST00000389589 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP37.68■■■■□ 3.62
SHOX2-201ENST00000389589 RAPGEF6Q8TEU7 1601 aa37.66■■■■□ 3.62
SHOX2-201ENST00000389589 CHD1O14646 1710 aa37.65■■■■□ 3.62
SHOX2-201ENST00000389589 JPH4Q96JJ6 628 aa37.65■■■■□ 3.62
SHOX2-201ENST00000389589 NCOA2Q15596 1464 aa37.63■■■■□ 3.61
SHOX2-201ENST00000389589 MAGI3Q5TCQ9 1506 aa37.61■■■■□ 3.61
SHOX2-201ENST00000389589 FGD6Q6ZV73 1430 aa37.6■■■■□ 3.61
SHOX2-201ENST00000389589 ARHGEF11O15085 1522 aa37.58■■■■□ 3.61
SHOX2-201ENST00000389589 CDK13Q14004 1512 aaKnown RBP37.57■■■■□ 3.61
SHOX2-201ENST00000389589 FAM50AQ14320 339 aaKnown RBP37.56■■■■□ 3.6
SHOX2-201ENST00000389589 MYOM3Q5VTT5 1437 aa37.54■■■■□ 3.6
SHOX2-201ENST00000389589 ITGAEP38570 1179 aa37.54■■■■□ 3.6
SHOX2-201ENST00000389589 NUP153P49790 1475 aaKnown RBP37.54■■■■□ 3.6
SHOX2-201ENST00000389589 CLSPNQ9HAW4 1339 aa37.46■■■■□ 3.59
SHOX2-201ENST00000389589 DHX57Q6P158 1386 aaKnown RBP37.43■■■■□ 3.58
SHOX2-201ENST00000389589 SETD5Q9C0A6 1442 aa37.4■■■■□ 3.58
SHOX2-201ENST00000389589 PLB1Q6P1J6 1458 aa37.39■■■■□ 3.58
SHOX2-201ENST00000389589 PTPN23Q9H3S7 1636 aa37.39■■■■□ 3.58
SHOX2-201ENST00000389589 CDK11AQ9UQ88 783 aaPredicted RBP37.38■■■■□ 3.57
SHOX2-201ENST00000389589 SHROOM2Q13796 1616 aa37.37■■■■□ 3.57
SHOX2-201ENST00000389589 PRG4Q92954 1404 aaPredicted RBP37.36■■■■□ 3.57
SHOX2-201ENST00000389589 RAB3GAP2Q9H2M9 1393 aa37.35■■■■□ 3.57
SHOX2-201ENST00000389589 ABCA8O94911 1581 aa37.35■■■■□ 3.57
SHOX2-201ENST00000389589 ARID3CA6NKF2 412 aa37.33■■■■□ 3.57
SHOX2-201ENST00000389589 TCOF1Q13428 1488 aaKnown RBP37.31■■■■□ 3.56
SHOX2-201ENST00000389589 MIA2Q96PC5 1412 aa37.3■■■■□ 3.56
SHOX2-201ENST00000389589 TROQ12816 1431 aaPredicted RBP37.24■■■■□ 3.55
SHOX2-201ENST00000389589 ADCY10Q96PN6 1610 aa37.21■■■■□ 3.55
SHOX2-201ENST00000389589 PTPRGP23470 1445 aa37.2■■■■□ 3.55
SHOX2-201ENST00000389589 CLASP1Q7Z460 1538 aa37.16■■■■□ 3.54
SHOX2-201ENST00000389589 PTPRKQ15262 1439 aa37.14■■■■□ 3.54
SHOX2-201ENST00000389589 HFM1A2PYH4 1435 aa37.13■■■■□ 3.53
SHOX2-201ENST00000389589 ITSN2Q9NZM3 1697 aa37.11■■■■□ 3.53
SHOX2-201ENST00000389589 ATP10BO94823 1461 aa37.1■■■■□ 3.53
SHOX2-201ENST00000389589 KIF14Q15058 1648 aa37.04■■■■□ 3.52
SHOX2-201ENST00000389589 PLEKHD1A6NEE1 506 aa37.02■■■■□ 3.52
SHOX2-201ENST00000389589 UACAQ9BZF9 1416 aa37.01■■■■□ 3.52
SHOX2-201ENST00000389589 MAPKBP1O60336 1514 aa37.01■■■■□ 3.52
SHOX2-201ENST00000389589 AKNAQ7Z591 1439 aa37■■■■□ 3.51
SHOX2-201ENST00000389589 NAIPQ13075 1403 aa36.99■■■■□ 3.51
SHOX2-201ENST00000389589 ERCC6L2Q5T890 1561 aa36.99■■■■□ 3.51
SHOX2-201ENST00000389589 GCC2Q8IWJ2 1684 aa36.99■■■■□ 3.51
SHOX2-201ENST00000389589 DNMT1P26358 1616 aaKnown RBP36.96■■■■□ 3.51
SHOX2-201ENST00000389589 GPATCH8Q9UKJ3 1502 aaKnown RBP36.95■■■■□ 3.51
SHOX2-201ENST00000389589 ABCC2Q92887 1545 aa36.9■■■■□ 3.5
SHOX2-201ENST00000389589 DAPK1P53355 1430 aa36.89■■■■□ 3.5
SHOX2-201ENST00000389589 CDC42BPAQ5VT25 1732 aa36.89■■■■□ 3.5
SHOX2-201ENST00000389589 ABCC10Q5T3U5 1492 aa36.88■■■■□ 3.49
SHOX2-201ENST00000389589 CFDP1Q9UEE9 299 aaPredicted RBP36.87■■■■□ 3.49
SHOX2-201ENST00000389589 CAMSAP2Q08AD1 1489 aa36.86■■■■□ 3.49
SHOX2-201ENST00000389589 ROCK1Q13464 1354 aa36.83■■■■□ 3.49
SHOX2-201ENST00000389589 ABCC5O15440 1437 aa36.82■■■■□ 3.48
SHOX2-201ENST00000389589 ZNF316A6NFI3 1004 aaPredicted RBP36.81■■■■□ 3.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms