RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CEP170Q5SW79 1584 aa16.58■□□□□ 0.25
VPS53-202ENST00000389040 JPH4Q96JJ6 628 aa16.56■□□□□ 0.24
VPS53-202ENST00000389040 KIF21BO75037 1637 aa16.54■□□□□ 0.24
VPS53-202ENST00000389040 GOLGA3Q08378 1498 aa16.48■□□□□ 0.23
VPS53-202ENST00000389040 SHROOM2Q13796 1616 aa16.48■□□□□ 0.23
VPS53-202ENST00000389040 ARHGEF11O15085 1522 aa16.47■□□□□ 0.23
VPS53-202ENST00000389040 IQGAP2Q13576 1575 aa16.47■□□□□ 0.23
VPS53-202ENST00000389040 PRG4Q92954 1404 aaPredicted RBP16.46■□□□□ 0.23
VPS53-202ENST00000389040 CARMIL2Q6F5E8 1435 aa16.45■□□□□ 0.22
VPS53-202ENST00000389040 UGGT2Q9NYU1 1516 aa16.44■□□□□ 0.22
VPS53-202ENST00000389040 UBTFP17480 764 aaKnown RBP16.43■□□□□ 0.22
VPS53-202ENST00000389040 RIMBP3CA6NJZ7 1639 aa16.4■□□□□ 0.22
VPS53-202ENST00000389040 RIMBP3BA6NNM3 1639 aa16.4■□□□□ 0.22
VPS53-202ENST00000389040 RIMBP3Q9UFD9 1639 aa16.4■□□□□ 0.22
VPS53-202ENST00000389040 CTTNBP2Q8WZ74 1663 aa16.38■□□□□ 0.21
VPS53-202ENST00000389040 TNIKQ9UKE5 1360 aa16.36■□□□□ 0.21
VPS53-202ENST00000389040 DISP1Q96F81 1524 aa16.35■□□□□ 0.21
VPS53-202ENST00000389040 LOC105371045A0A1W2PR82 267 aa16.35■□□□□ 0.21
VPS53-202ENST00000389040 CYB5RLQ6IPT4 315 aa16.35■□□□□ 0.21
VPS53-202ENST00000389040 ARAP1Q96P48 1450 aa16.34■□□□□ 0.21
VPS53-202ENST00000389040 PTPRGP23470 1445 aa16.33■□□□□ 0.2
VPS53-202ENST00000389040 ERCC6L2Q5T890 1561 aa16.31■□□□□ 0.2
VPS53-202ENST00000389040 EFCAB5A4FU69 1503 aa16.29■□□□□ 0.2
VPS53-202ENST00000389040 KIAA0556O60303 1618 aa16.29■□□□□ 0.2
VPS53-202ENST00000389040 EHMT2Q96KQ7 1210 aa16.27■□□□□ 0.2
VPS53-202ENST00000389040 SAMD9Q5K651 1589 aa16.26■□□□□ 0.19
VPS53-202ENST00000389040 UHRF1BP1LA0JNW5 1464 aa16.22■□□□□ 0.19
VPS53-202ENST00000389040 UACAQ9BZF9 1416 aa16.21■□□□□ 0.19
VPS53-202ENST00000389040 NPM1P06748 294 aaKnown RBP eCLIP16.19■□□□□ 0.18
VPS53-202ENST00000389040 RANGAP1P46060 587 aaPredicted RBP16.19■□□□□ 0.18
VPS53-202ENST00000389040 P3H3Q8IVL6 736 aa16.19■□□□□ 0.18
VPS53-202ENST00000389040 ARHGAP35Q9NRY4 1499 aa16.19■□□□□ 0.18
VPS53-202ENST00000389040 CLIP1P30622 1438 aa16.19■□□□□ 0.18
VPS53-202ENST00000389040 FMN1Q68DA7 1419 aa16.18■□□□□ 0.18
VPS53-202ENST00000389040 FHOD3Q2V2M9 1422 aa16.15■□□□□ 0.18
VPS53-202ENST00000389040 ABCC2Q92887 1545 aa16.15■□□□□ 0.18
VPS53-202ENST00000389040 TTBK1Q5TCY1 1321 aaPredicted RBP16.14■□□□□ 0.17
VPS53-202ENST00000389040 CEP162Q5TB80 1403 aa16.14■□□□□ 0.17
VPS53-202ENST00000389040 ABCA8O94911 1581 aa16.12■□□□□ 0.17
VPS53-202ENST00000389040 PLB1Q6P1J6 1458 aa16.12■□□□□ 0.17
VPS53-202ENST00000389040 KDM5BQ9UGL1 1544 aa16.11■□□□□ 0.17
VPS53-202ENST00000389040 ADCY10Q96PN6 1610 aa16.1■□□□□ 0.17
VPS53-202ENST00000389040 MAPKBP1O60336 1514 aa16.06■□□□□ 0.16
VPS53-202ENST00000389040 CASKIN1Q8WXD9 1431 aa16.05■□□□□ 0.16
VPS53-202ENST00000389040 RAPGEF6Q8TEU7 1601 aa16.05■□□□□ 0.16
VPS53-202ENST00000389040 NUP153P49790 1475 aaKnown RBP16.03■□□□□ 0.16
VPS53-202ENST00000389040 ATP10BO94823 1461 aa16.02■□□□□ 0.15
VPS53-202ENST00000389040 CDK11AQ9UQ88 783 aaPredicted RBP16.02■□□□□ 0.15
VPS53-202ENST00000389040 FYCO1Q9BQS8 1478 aa16■□□□□ 0.15
VPS53-202ENST00000389040 ASXL2Q76L83 1435 aa15.99■□□□□ 0.15
VPS53-202ENST00000389040 HECW1Q76N89 1606 aa15.98■□□□□ 0.15
VPS53-202ENST00000389040 PLEKHD1A6NEE1 506 aa15.98■□□□□ 0.15
VPS53-202ENST00000389040 VPS8Q8N3P4 1428 aa15.97■□□□□ 0.15
VPS53-202ENST00000389040 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.97■□□□□ 0.15
VPS53-202ENST00000389040 HNRNPUL2Q1KMD3 747 aaKnown RBP15.97■□□□□ 0.15
VPS53-202ENST00000389040 PCGF6Q9BYE7 350 aa15.97■□□□□ 0.15
VPS53-202ENST00000389040 CCDC18Q5T9S5 1454 aa15.97■□□□□ 0.15
VPS53-202ENST00000389040 ZCCHC11Q5TAX3 1644 aaKnown RBP15.96■□□□□ 0.15
VPS53-202ENST00000389040 ATP1B4Q9UN42 357 aaPredicted RBP15.96■□□□□ 0.15
VPS53-202ENST00000389040 EPRSP07814 1512 aaKnown RBP15.96■□□□□ 0.15
VPS53-202ENST00000389040 ABCC10Q5T3U5 1492 aa15.96■□□□□ 0.14
VPS53-202ENST00000389040 WDR7Q9Y4E6 1490 aa15.96■□□□□ 0.14
VPS53-202ENST00000389040 TRHP20396 242 aaPredicted RBP15.94■□□□□ 0.14
VPS53-202ENST00000389040 FAM69CQ0P6D2 419 aa15.91■□□□□ 0.14
VPS53-202ENST00000389040 PCF11O94913 1555 aaKnown RBP15.91■□□□□ 0.14
VPS53-202ENST00000389040 ARID3CA6NKF2 412 aa15.9■□□□□ 0.14
VPS53-202ENST00000389040 GLI2P10070 1586 aa15.89■□□□□ 0.13
VPS53-202ENST00000389040 MAP3K1Q13233 1512 aa15.87■□□□□ 0.13
VPS53-202ENST00000389040 KCNH8Q96L42 1107 aa15.86■□□□□ 0.13
VPS53-202ENST00000389040 DIP2BQ9P265 1576 aa15.86■□□□□ 0.13
VPS53-202ENST00000389040 CDK13Q14004 1512 aaKnown RBP15.86■□□□□ 0.13
VPS53-202ENST00000389040 TROQ12816 1431 aaPredicted RBP15.86■□□□□ 0.13
VPS53-202ENST00000389040 APLP2Q06481 763 aa15.86■□□□□ 0.13
VPS53-202ENST00000389040 TRIM26Q12899 539 aaPredicted RBP15.86■□□□□ 0.13
VPS53-202ENST00000389040 CD109Q6YHK3 1445 aa15.81■□□□□ 0.12
VPS53-202ENST00000389040 MTUS2Q5JR59 1369 aa15.8■□□□□ 0.12
VPS53-202ENST00000389040 PHLDB1Q86UU1 1377 aa15.79■□□□□ 0.12
VPS53-202ENST00000389040 MAGI3Q5TCQ9 1506 aa15.78■□□□□ 0.12
VPS53-202ENST00000389040 HRCP23327 699 aa15.78■□□□□ 0.12
VPS53-202ENST00000389040 TEX14Q8IWB6 1497 aa15.77■□□□□ 0.12
VPS53-202ENST00000389040 ABCA9Q8IUA7 1624 aa15.77■□□□□ 0.12
VPS53-202ENST00000389040 TIAM1Q13009 1591 aa15.76■□□□□ 0.11
VPS53-202ENST00000389040 KIF13AQ9H1H9 1805 aa15.76■□□□□ 0.11
VPS53-202ENST00000389040 MAP3K4Q9Y6R4 1608 aa15.76■□□□□ 0.11
VPS53-202ENST00000389040 CFAP43Q8NDM7 1665 aa15.76■□□□□ 0.11
VPS53-202ENST00000389040 LRRIQ1Q96JM4 1722 aa15.75■□□□□ 0.11
VPS53-202ENST00000389040 KIF14Q15058 1648 aa15.75■□□□□ 0.11
VPS53-202ENST00000389040 EHBP1L1Q8N3D4 1523 aa15.75■□□□□ 0.11
VPS53-202ENST00000389040 LRRC9Q6ZRR7 1453 aa15.74■□□□□ 0.11
VPS53-202ENST00000389040 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.74■□□□□ 0.11
VPS53-202ENST00000389040 PLCH2O75038 1416 aa15.73■□□□□ 0.11
VPS53-202ENST00000389040 ARAP3Q8WWN8 1544 aa15.73■□□□□ 0.11
VPS53-202ENST00000389040 NEO1Q92859 1461 aa15.7■□□□□ 0.1
VPS53-202ENST00000389040 EFCAB2Q5VUJ9 269 aa15.7■□□□□ 0.1
VPS53-202ENST00000389040 KANK4Q5T7N3 995 aaPredicted RBP15.69■□□□□ 0.1
VPS53-202ENST00000389040 CCNB3Q8WWL7 1395 aa15.68■□□□□ 0.1
VPS53-202ENST00000389040 TTC37Q6PGP7 1564 aa15.66■□□□□ 0.1
VPS53-202ENST00000389040 FANCAO15360 1455 aa15.65■□□□□ 0.1
VPS53-202ENST00000389040 GPATCH8Q9UKJ3 1502 aaKnown RBP15.65■□□□□ 0.1
VPS53-202ENST00000389040 NCOA2Q15596 1464 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms