RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 NISCHQ9Y2I1 1504 aa24■■□□□ 1.43
VPS53-202ENST00000389040 CCDC180Q9P1Z9 1646 aa21.21■□□□□ 0.99
VPS53-202ENST00000389040 ABCC9O60706 1549 aa20.5■□□□□ 0.87
VPS53-202ENST00000389040 ZCCHC6Q5VYS8 1495 aaKnown RBP20.03■□□□□ 0.8
VPS53-202ENST00000389040 MYO15BQ96JP2 1530 aa20■□□□□ 0.79
VPS53-202ENST00000389040 NACADO15069 1562 aa19.97■□□□□ 0.79
VPS53-202ENST00000389040 DCAF1Q9Y4B6 1507 aa19.96■□□□□ 0.79
VPS53-202ENST00000389040 DCAF8L2P0C7V8 631 aa19.93■□□□□ 0.78
VPS53-202ENST00000389040 RB1CC1Q8TDY2 1594 aa19.9■□□□□ 0.78
VPS53-202ENST00000389040 SCRIBQ14160 1630 aa19.27■□□□□ 0.68
VPS53-202ENST00000389040 UNC13AQ9UPW8 1703 aa19.25■□□□□ 0.67
VPS53-202ENST00000389040 SHROOM4Q9ULL8 1493 aa19.23■□□□□ 0.67
VPS53-202ENST00000389040 PABPN1Q86U42 306 aaKnown RBP eCLIP19.21■□□□□ 0.67
VPS53-202ENST00000389040 BICRAQ9NZM4 1560 aa19.21■□□□□ 0.67
VPS53-202ENST00000389040 CHIC1Q5VXU3 224 aa18.88■□□□□ 0.61
VPS53-202ENST00000389040 EIF4G1Q04637 1599 aaKnown RBP18.72■□□□□ 0.59
VPS53-202ENST00000389040 AEBP2Q6ZN18 517 aaPredicted RBP18.71■□□□□ 0.59
VPS53-202ENST00000389040 DNAJC5BQ9UF47 199 aa18.64■□□□□ 0.57
VPS53-202ENST00000389040 BAZ1AQ9NRL2 1556 aaPredicted RBP18.61■□□□□ 0.57
VPS53-202ENST00000389040 CECR2Q9BXF3 1484 aa18.6■□□□□ 0.57
VPS53-202ENST00000389040 CC2D2AQ9P2K1 1620 aa18.56■□□□□ 0.56
VPS53-202ENST00000389040 SMARCA4P51532 1647 aa18.52■□□□□ 0.56
VPS53-202ENST00000389040 NCAPD3P42695 1498 aa18.45■□□□□ 0.54
VPS53-202ENST00000389040 SMARCA2P51531 1590 aa18.44■□□□□ 0.54
VPS53-202ENST00000389040 MROH2BQ7Z745 1585 aa18.44■□□□□ 0.54
VPS53-202ENST00000389040 ATAD2BQ9ULI0 1458 aa18.44■□□□□ 0.54
VPS53-202ENST00000389040 PEG3Q9GZU2 1588 aa18.42■□□□□ 0.54
VPS53-202ENST00000389040 RSF1Q96T23 1441 aaPredicted RBP18.37■□□□□ 0.53
VPS53-202ENST00000389040 HMGXB3Q12766 1538 aa18.33■□□□□ 0.53
VPS53-202ENST00000389040 BAZ1BQ9UIG0 1483 aaKnown RBP18.28■□□□□ 0.52
VPS53-202ENST00000389040 WIZO95785 1651 aa18.19■□□□□ 0.5
VPS53-202ENST00000389040 TOP2AP11388 1531 aaKnown RBP18.1■□□□□ 0.49
VPS53-202ENST00000389040 SUPT5HO00267 1087 aaKnown RBP18■□□□□ 0.47
VPS53-202ENST00000389040 CADPSQ9ULU8 1353 aa17.92■□□□□ 0.46
VPS53-202ENST00000389040 CCDC88BA6NC98 1476 aa17.9■□□□□ 0.46
VPS53-202ENST00000389040 LAMC3Q9Y6N6 1575 aa17.88■□□□□ 0.45
VPS53-202ENST00000389040 CFTRP13569 1480 aa17.84■□□□□ 0.45
VPS53-202ENST00000389040 PDS5BQ9NTI5 1447 aa17.81■□□□□ 0.44
VPS53-202ENST00000389040 NESP48681 1621 aa17.77■□□□□ 0.44
VPS53-202ENST00000389040 ERCC6Q03468 1493 aa17.71■□□□□ 0.43
VPS53-202ENST00000389040 FANCD2Q9BXW9 1451 aa17.65■□□□□ 0.42
VPS53-202ENST00000389040 CEP164Q9UPV0 1460 aa17.61■□□□□ 0.41
VPS53-202ENST00000389040 PRDM2Q13029 1718 aa17.56■□□□□ 0.4
VPS53-202ENST00000389040 MRC2Q9UBG0 1479 aa17.55■□□□□ 0.4
VPS53-202ENST00000389040 KIF21AQ7Z4S6 1674 aa17.52■□□□□ 0.4
VPS53-202ENST00000389040 CUX2O14529 1486 aa17.52■□□□□ 0.4
VPS53-202ENST00000389040 ABCC8Q09428 1581 aa17.51■□□□□ 0.39
VPS53-202ENST00000389040 THOC2Q8NI27 1593 aaKnown RBP17.47■□□□□ 0.39
VPS53-202ENST00000389040 WDR62O43379 1518 aa17.47■□□□□ 0.39
VPS53-202ENST00000389040 URB2Q14146 1524 aaKnown RBP17.42■□□□□ 0.38
VPS53-202ENST00000389040 DNMBPQ6XZF7 1577 aa17.37■□□□□ 0.37
VPS53-202ENST00000389040 TOPBP1Q92547 1522 aa17.37■□□□□ 0.37
VPS53-202ENST00000389040 WRNQ14191 1432 aaPredicted RBP eCLIP17.32■□□□□ 0.36
VPS53-202ENST00000389040 CUX1P39880 1505 aa17.29■□□□□ 0.36
VPS53-202ENST00000389040 IFT140Q96RY7 1462 aa17.27■□□□□ 0.36
VPS53-202ENST00000389040 POLA1P09884 1462 aaPredicted RBP17.24■□□□□ 0.35
VPS53-202ENST00000389040 TOP2BQ02880 1626 aa17.22■□□□□ 0.35
VPS53-202ENST00000389040 SOGA1O94964 1423 aa17.22■□□□□ 0.35
VPS53-202ENST00000389040 FGD5Q6ZNL6 1462 aa17.21■□□□□ 0.35
VPS53-202ENST00000389040 BIVM-ERCC5R4GMW8 1640 aa17.19■□□□□ 0.34
VPS53-202ENST00000389040 SYNJ1O43426 1573 aa17.16■□□□□ 0.34
VPS53-202ENST00000389040 TARBP1Q13395 1621 aaKnown RBP17.14■□□□□ 0.33
VPS53-202ENST00000389040 WDR97A6NE52 1622 aa17.13■□□□□ 0.33
VPS53-202ENST00000389040 RAD54L2Q9Y4B4 1467 aa17.12■□□□□ 0.33
VPS53-202ENST00000389040 ABCA10Q8WWZ4 1543 aa17.12■□□□□ 0.33
VPS53-202ENST00000389040 TRIM41Q8WV44 630 aa17.09■□□□□ 0.33
VPS53-202ENST00000389040 ZNF608Q9ULD9 1512 aaPredicted RBP17.07■□□□□ 0.32
VPS53-202ENST00000389040 TDRD9Q8NDG6 1382 aaKnown RBP17.05■□□□□ 0.32
VPS53-202ENST00000389040 AQRO60306 1485 aaKnown RBP eCLIP17.03■□□□□ 0.327e-8■■■■■ 27.9
VPS53-202ENST00000389040 GAPVD1Q14C86 1478 aa17.01■□□□□ 0.31
VPS53-202ENST00000389040 GRIN2BQ13224 1484 aa17■□□□□ 0.31
VPS53-202ENST00000389040 EIF4G3O43432 1585 aaKnown RBP16.99■□□□□ 0.31
VPS53-202ENST00000389040 KIF27Q86VH2 1401 aa16.98■□□□□ 0.31
VPS53-202ENST00000389040 ABCA5Q8WWZ7 1642 aa16.95■□□□□ 0.3
VPS53-202ENST00000389040 MAGI1Q96QZ7 1491 aaPredicted RBP16.94■□□□□ 0.3
VPS53-202ENST00000389040 ERICH3Q5RHP9 1530 aa16.93■□□□□ 0.3
VPS53-202ENST00000389040 IGF1RP08069 1367 aa16.88■□□□□ 0.29
VPS53-202ENST00000389040 SNAPC4Q5SXM2 1469 aa16.87■□□□□ 0.29
VPS53-202ENST00000389040 OSCARQ8IYS5 282 aa16.86■□□□□ 0.29
VPS53-202ENST00000389040 CHMP7Q8WUX9 453 aaPredicted RBP16.86■□□□□ 0.29
VPS53-202ENST00000389040 SYNJ2O15056 1496 aa16.86■□□□□ 0.29
VPS53-202ENST00000389040 FHAD1B1AJZ9 1412 aa16.85■□□□□ 0.29
VPS53-202ENST00000389040 EEA1Q15075 1411 aa16.85■□□□□ 0.29
VPS53-202ENST00000389040 PBRM1Q86U86 1689 aa16.82■□□□□ 0.28
VPS53-202ENST00000389040 FBLN2P98095 1184 aa16.8■□□□□ 0.28
VPS53-202ENST00000389040 PHF23Q9BUL5 403 aaPredicted RBP16.8■□□□□ 0.28
VPS53-202ENST00000389040 CARMIL1Q5VZK9 1371 aa16.79■□□□□ 0.28
VPS53-202ENST00000389040 ADAMTS12P58397 1594 aa16.77■□□□□ 0.28
VPS53-202ENST00000389040 CUL7Q14999 1698 aa16.76■□□□□ 0.27
VPS53-202ENST00000389040 CSRNP3Q8WYN3 585 aa16.76■□□□□ 0.27
VPS53-202ENST00000389040 GRIN2AQ12879 1464 aa16.75■□□□□ 0.27
VPS53-202ENST00000389040 DNAJC5Q9H3Z4 198 aa16.74■□□□□ 0.27
VPS53-202ENST00000389040 RUSC2Q8N2Y8 1516 aa16.74■□□□□ 0.27
VPS53-202ENST00000389040 NUP160Q12769 1436 aa16.7■□□□□ 0.26
VPS53-202ENST00000389040 RAPGEF2Q9Y4G8 1499 aa16.7■□□□□ 0.26
VPS53-202ENST00000389040 PRXQ9BXM0 1461 aa16.69■□□□□ 0.26
VPS53-202ENST00000389040 CHD1O14646 1710 aa16.67■□□□□ 0.26
VPS53-202ENST00000389040 CLASP1Q7Z460 1538 aa16.61■□□□□ 0.25
VPS53-202ENST00000389040 KIAA0586Q9BVV6 1533 aa16.61■□□□□ 0.25
VPS53-202ENST00000389040 FAM9AQ8IZU1 332 aaPredicted RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms