RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 BCANQ96GW7 911 aa19.92■□□□□ 0.78
SHROOM1-203ENST00000378679 KANK4Q5T7N3 995 aaPredicted RBP19.92■□□□□ 0.78
SHROOM1-203ENST00000378679 FHAD1B1AJZ9 1412 aa19.92■□□□□ 0.78
SHROOM1-203ENST00000378679 ANP32CO43423 234 aa19.91■□□□□ 0.78
SHROOM1-203ENST00000378679 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.87■□□□□ 0.773e-8■■■■□ 21
SHROOM1-203ENST00000378679 BICRAQ9NZM4 1560 aa19.86■□□□□ 0.77
SHROOM1-203ENST00000378679 CFDP1Q9UEE9 299 aaPredicted RBP19.86■□□□□ 0.77
SHROOM1-203ENST00000378679 CCNB3Q8WWL7 1395 aa19.82■□□□□ 0.76
SHROOM1-203ENST00000378679 DDX10Q13206 875 aaKnown RBP19.77■□□□□ 0.76
SHROOM1-203ENST00000378679 IGF1RP08069 1367 aa19.76■□□□□ 0.75
SHROOM1-203ENST00000378679 FGD5Q6ZNL6 1462 aa19.74■□□□□ 0.75
SHROOM1-203ENST00000378679 CFTRP13569 1480 aa19.73■□□□□ 0.75
SHROOM1-203ENST00000378679 CHGAP10645 457 aaKnown RBP19.73■□□□□ 0.75
SHROOM1-203ENST00000378679 HIRIP3Q9BW71 556 aaPredicted RBP19.72■□□□□ 0.75
SHROOM1-203ENST00000378679 RAD54L2Q9Y4B4 1467 aa19.7■□□□□ 0.74
SHROOM1-203ENST00000378679 FHOD3Q2V2M9 1422 aa19.7■□□□□ 0.74
SHROOM1-203ENST00000378679 KDM2AQ9Y2K7 1162 aa19.69■□□□□ 0.74
SHROOM1-203ENST00000378679 FMN1Q68DA7 1419 aa19.68■□□□□ 0.74
SHROOM1-203ENST00000378679 SIN3AQ96ST3 1273 aa19.67■□□□□ 0.74
SHROOM1-203ENST00000378679 NESP48681 1621 aa19.65■□□□□ 0.74
SHROOM1-203ENST00000378679 CC2D2AQ9P2K1 1620 aa19.64■□□□□ 0.73
SHROOM1-203ENST00000378679 HMGXB3Q12766 1538 aa19.64■□□□□ 0.73
SHROOM1-203ENST00000378679 DNAJC5BQ9UF47 199 aa19.63■□□□□ 0.73
SHROOM1-203ENST00000378679 JPH4Q96JJ6 628 aa19.62■□□□□ 0.73
SHROOM1-203ENST00000378679 ESF1Q9H501 851 aaKnown RBP19.62■□□□□ 0.73
SHROOM1-203ENST00000378679 CARMIL2Q6F5E8 1435 aa19.62■□□□□ 0.73
SHROOM1-203ENST00000378679 SYNJ1O43426 1573 aa19.61■□□□□ 0.73
SHROOM1-203ENST00000378679 GAPVD1Q14C86 1478 aa19.58■□□□□ 0.72
SHROOM1-203ENST00000378679 ARHGAP35Q9NRY4 1499 aa19.58■□□□□ 0.72
SHROOM1-203ENST00000378679 MIER1Q8N108 512 aa19.57■□□□□ 0.72
SHROOM1-203ENST00000378679 CLSPNQ9HAW4 1339 aa19.57■□□□□ 0.72
SHROOM1-203ENST00000378679 STAG3Q9UJ98 1225 aa19.55■□□□□ 0.72
SHROOM1-203ENST00000378679 RGL3Q3MIN7 710 aa19.55■□□□□ 0.72
SHROOM1-203ENST00000378679 EIF4G2P78344 907 aaKnown RBP eCLIP19.54■□□□□ 0.72
SHROOM1-203ENST00000378679 SETD5Q9C0A6 1442 aa19.51■□□□□ 0.71
SHROOM1-203ENST00000378679 AQRO60306 1485 aaKnown RBP eCLIP19.5■□□□□ 0.711e-7■■■■■ 31.6
SHROOM1-203ENST00000378679 PLPPR3Q6T4P5 718 aa19.5■□□□□ 0.71
SHROOM1-203ENST00000378679 UNC13AQ9UPW8 1703 aa19.48■□□□□ 0.71
SHROOM1-203ENST00000378679 CUX1P39880 1505 aa19.47■□□□□ 0.71
SHROOM1-203ENST00000378679 RAB3GAP2Q9H2M9 1393 aa19.46■□□□□ 0.71
SHROOM1-203ENST00000378679 TOP2BQ02880 1626 aa19.42■□□□□ 0.7
SHROOM1-203ENST00000378679 FAM9BQ8IZU0 186 aa19.42■□□□□ 0.7
SHROOM1-203ENST00000378679 PEG3Q9GZU2 1588 aa19.41■□□□□ 0.7
SHROOM1-203ENST00000378679 HNRNPUQ00839 825 aaKnown RBP eCLIP19.41■□□□□ 0.7
SHROOM1-203ENST00000378679 TOPBP1Q92547 1522 aa19.4■□□□□ 0.7
SHROOM1-203ENST00000378679 PRXQ9BXM0 1461 aa19.39■□□□□ 0.7
SHROOM1-203ENST00000378679 POLA1P09884 1462 aaPredicted RBP19.39■□□□□ 0.69
SHROOM1-203ENST00000378679 FOXD1Q16676 465 aa19.39■□□□□ 0.69
SHROOM1-203ENST00000378679 SENP3Q9H4L4 574 aaPredicted RBP19.38■□□□□ 0.69
SHROOM1-203ENST00000378679 KIF21BO75037 1637 aa19.38■□□□□ 0.69
SHROOM1-203ENST00000378679 TIMELESSQ9UNS1 1208 aa19.35■□□□□ 0.69
SHROOM1-203ENST00000378679 EFCAB2Q5VUJ9 269 aa19.34■□□□□ 0.69
SHROOM1-203ENST00000378679 TMC1Q8TDI8 760 aa19.33■□□□□ 0.68
SHROOM1-203ENST00000378679 MRS2Q9HD23 443 aa19.33■□□□□ 0.68
SHROOM1-203ENST00000378679 ARAP1Q96P48 1450 aa19.33■□□□□ 0.68
SHROOM1-203ENST00000378679 PKD2Q13563 968 aa19.32■□□□□ 0.68
SHROOM1-203ENST00000378679 CARD11Q9BXL7 1154 aa19.32■□□□□ 0.68
SHROOM1-203ENST00000378679 PTPRGP23470 1445 aa19.32■□□□□ 0.68
SHROOM1-203ENST00000378679 HNRNPMP52272 730 aaKnown RBP eCLIP19.32■□□□□ 0.68
SHROOM1-203ENST00000378679 MPHOSPH9Q99550 1183 aa19.31■□□□□ 0.68
SHROOM1-203ENST00000378679 ERICH3Q5RHP9 1530 aa19.31■□□□□ 0.68
SHROOM1-203ENST00000378679 CCDC18Q5T9S5 1454 aa19.3■□□□□ 0.68
SHROOM1-203ENST00000378679 GRIN2BQ13224 1484 aa19.29■□□□□ 0.68
SHROOM1-203ENST00000378679 FKBP8Q14318 412 aa19.28■□□□□ 0.68
SHROOM1-203ENST00000378679 SALL2Q9Y467 1007 aaPredicted RBP19.28■□□□□ 0.68
SHROOM1-203ENST00000378679 MRC2Q9UBG0 1479 aa19.28■□□□□ 0.68
SHROOM1-203ENST00000378679 DCAF11Q8TEB1 546 aa19.26■□□□□ 0.67
SHROOM1-203ENST00000378679 ANKRD30AQ9BXX3 1397 aa19.24■□□□□ 0.67
SHROOM1-203ENST00000378679 NUP155O75694 1391 aa19.24■□□□□ 0.67
SHROOM1-203ENST00000378679 DNMBPQ6XZF7 1577 aa19.22■□□□□ 0.67
SHROOM1-203ENST00000378679 ARID4BQ4LE39 1312 aaPredicted RBP19.22■□□□□ 0.67
SHROOM1-203ENST00000378679 DHX57Q6P158 1386 aaKnown RBP19.22■□□□□ 0.67
SHROOM1-203ENST00000378679 PHLDB1Q86UU1 1377 aa19.21■□□□□ 0.67
SHROOM1-203ENST00000378679 NEFMP07197 916 aa19.2■□□□□ 0.66
SHROOM1-203ENST00000378679 GGT6Q6P531 493 aa19.2■□□□□ 0.66
SHROOM1-203ENST00000378679 PPP1R15AO75807 674 aaPredicted RBP19.19■□□□□ 0.66
SHROOM1-203ENST00000378679 IFT140Q96RY7 1462 aa19.18■□□□□ 0.66
SHROOM1-203ENST00000378679 RSPH4AQ5TD94 716 aa19.17■□□□□ 0.66
SHROOM1-203ENST00000378679 OSCARQ8IYS5 282 aa19.17■□□□□ 0.66
SHROOM1-203ENST00000378679 LRRC9Q6ZRR7 1453 aa19.16■□□□□ 0.66
SHROOM1-203ENST00000378679 CASKIN1Q8WXD9 1431 aa19.16■□□□□ 0.66
SHROOM1-203ENST00000378679 ZNF644Q9H582 1327 aaPredicted RBP19.16■□□□□ 0.66
SHROOM1-203ENST00000378679 LAMC3Q9Y6N6 1575 aa19.16■□□□□ 0.66
SHROOM1-203ENST00000378679 DAXXQ9UER7 740 aaPredicted RBP19.15■□□□□ 0.66
SHROOM1-203ENST00000378679 ABCA10Q8WWZ4 1543 aa19.15■□□□□ 0.66
SHROOM1-203ENST00000378679 L3MBTL2Q969R5 705 aa19.14■□□□□ 0.65
SHROOM1-203ENST00000378679 KANK1Q14678 1352 aa19.12■□□□□ 0.65
SHROOM1-203ENST00000378679 HSPA5P11021 654 aaKnown RBP19.12■□□□□ 0.65
SHROOM1-203ENST00000378679 SPAG9O60271 1321 aaKnown RBP19.12■□□□□ 0.65
SHROOM1-203ENST00000378679 CANXP27824 592 aaKnown RBP19.12■□□□□ 0.65
SHROOM1-203ENST00000378679 KIF3BO15066 747 aa19.12■□□□□ 0.65
SHROOM1-203ENST00000378679 MLECQ14165 292 aa19.12■□□□□ 0.65
SHROOM1-203ENST00000378679 FGD6Q6ZV73 1430 aa19.12■□□□□ 0.65
SHROOM1-203ENST00000378679 SENP3-EIF4A1A0A087X0R7 540 aa19.09■□□□□ 0.65
SHROOM1-203ENST00000378679 WDR43Q15061 677 aaKnown RBP eCLIP19.09■□□□□ 0.65
SHROOM1-203ENST00000378679 CYB5RLQ6IPT4 315 aa19.09■□□□□ 0.65
SHROOM1-203ENST00000378679 MYOM3Q5VTT5 1437 aa19.08■□□□□ 0.65
SHROOM1-203ENST00000378679 SLC24A1O60721 1099 aa19.08■□□□□ 0.64
SHROOM1-203ENST00000378679 IRX6P78412 446 aaPredicted RBP19.08■□□□□ 0.64
SHROOM1-203ENST00000378679 CDCA8Q53HL2 280 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms