RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 NISCHQ9Y2I1 1504 aa26.97■■□□□ 1.91
SHROOM1-203ENST00000378679 DCAF8L2P0C7V8 631 aa25.75■■□□□ 1.71
SHROOM1-203ENST00000378679 SHROOM4Q9ULL8 1493 aa24.56■■□□□ 1.52
SHROOM1-203ENST00000378679 SUPT5HO00267 1087 aaKnown RBP24.47■■□□□ 1.51
SHROOM1-203ENST00000378679 EHMT2Q96KQ7 1210 aa23.14■■□□□ 1.3
SHROOM1-203ENST00000378679 ABCC9O60706 1549 aa22.91■■□□□ 1.26
SHROOM1-203ENST00000378679 FAM9AQ8IZU1 332 aaPredicted RBP22.91■■□□□ 1.26
SHROOM1-203ENST00000378679 TRIM41Q8WV44 630 aa22.72■■□□□ 1.23
SHROOM1-203ENST00000378679 PABPN1Q86U42 306 aaKnown RBP eCLIP22.44■■□□□ 1.18
SHROOM1-203ENST00000378679 ZCCHC6Q5VYS8 1495 aaKnown RBP22.42■■□□□ 1.18
SHROOM1-203ENST00000378679 CCDC180Q9P1Z9 1646 aa22.39■■□□□ 1.17
SHROOM1-203ENST00000378679 CHIC1Q5VXU3 224 aa22.38■■□□□ 1.17
SHROOM1-203ENST00000378679 APLP2Q06481 763 aa22.29■■□□□ 1.16
SHROOM1-203ENST00000378679 PCGF6Q9BYE7 350 aa22.27■■□□□ 1.16
SHROOM1-203ENST00000378679 RANGAP1P46060 587 aaPredicted RBP22.25■■□□□ 1.15
SHROOM1-203ENST00000378679 TTBK1Q5TCY1 1321 aaPredicted RBP22.24■■□□□ 1.15
SHROOM1-203ENST00000378679 UBTFP17480 764 aaKnown RBP22.18■■□□□ 1.14
SHROOM1-203ENST00000378679 LOC105371045A0A1W2PR82 267 aa22.09■■□□□ 1.13
SHROOM1-203ENST00000378679 SCRIBQ14160 1630 aa21.97■■□□□ 1.11
SHROOM1-203ENST00000378679 PPARGC1BQ86YN6 1023 aaKnown RBP21.86■■□□□ 1.09
SHROOM1-203ENST00000378679 ATP1B4Q9UN42 357 aaPredicted RBP21.84■■□□□ 1.09
SHROOM1-203ENST00000378679 CCER1Q8TC90 406 aaPredicted RBP21.61■■□□□ 1.05
SHROOM1-203ENST00000378679 TRIM26Q12899 539 aaPredicted RBP21.59■■□□□ 1.05
SHROOM1-203ENST00000378679 RB1CC1Q8TDY2 1594 aa21.58■■□□□ 1.05
SHROOM1-203ENST00000378679 NACADO15069 1562 aa21.56■■□□□ 1.04
SHROOM1-203ENST00000378679 DCAF1Q9Y4B6 1507 aa21.55■■□□□ 1.04
SHROOM1-203ENST00000378679 HRCP23327 699 aa21.54■■□□□ 1.04
SHROOM1-203ENST00000378679 ZEB1P37275 1124 aaPredicted RBP21.46■■□□□ 1.03
SHROOM1-203ENST00000378679 RSF1Q96T23 1441 aaPredicted RBP21.45■■□□□ 1.02
SHROOM1-203ENST00000378679 CSRNP3Q8WYN3 585 aa21.3■■□□□ 1
SHROOM1-203ENST00000378679 ITGAEP38570 1179 aa21.26■□□□□ 0.99
SHROOM1-203ENST00000378679 CECR2Q9BXF3 1484 aa21.23■□□□□ 0.99
SHROOM1-203ENST00000378679 HNRNPUL2Q1KMD3 747 aaKnown RBP21.23■□□□□ 0.99
SHROOM1-203ENST00000378679 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.2■□□□□ 0.99
SHROOM1-203ENST00000378679 PELP1Q8IZL8 1130 aaKnown RBP21.08■□□□□ 0.97
SHROOM1-203ENST00000378679 MYO15BQ96JP2 1530 aa21.03■□□□□ 0.96
SHROOM1-203ENST00000378679 BAZ1AQ9NRL2 1556 aaPredicted RBP21.02■□□□□ 0.96
SHROOM1-203ENST00000378679 YTHDC1Q96MU7 727 aaKnown RBP20.97■□□□□ 0.95
SHROOM1-203ENST00000378679 FBLN2P98095 1184 aa20.96■□□□□ 0.95
SHROOM1-203ENST00000378679 MROH2BQ7Z745 1585 aa20.94■□□□□ 0.94
SHROOM1-203ENST00000378679 BAZ1BQ9UIG0 1483 aaKnown RBP20.94■□□□□ 0.94
SHROOM1-203ENST00000378679 P3H3Q8IVL6 736 aa20.94■□□□□ 0.94
SHROOM1-203ENST00000378679 FAM50AQ14320 339 aaKnown RBP20.87■□□□□ 0.93
SHROOM1-203ENST00000378679 CENPBP07199 599 aaPredicted RBP20.84■□□□□ 0.93
SHROOM1-203ENST00000378679 WRNQ14191 1432 aaPredicted RBP eCLIP20.78■□□□□ 0.92
SHROOM1-203ENST00000378679 MYT1LQ9UL68 1186 aa20.74■□□□□ 0.91
SHROOM1-203ENST00000378679 ARID3CA6NKF2 412 aa20.71■□□□□ 0.91
SHROOM1-203ENST00000378679 CCDC88BA6NC98 1476 aa20.66■□□□□ 0.9
SHROOM1-203ENST00000378679 EEA1Q15075 1411 aa20.61■□□□□ 0.89
SHROOM1-203ENST00000378679 WIZO95785 1651 aa20.59■□□□□ 0.89
SHROOM1-203ENST00000378679 TRIM52Q96A61 297 aa20.54■□□□□ 0.88
SHROOM1-203ENST00000378679 CLIP1P30622 1438 aa20.54■□□□□ 0.88
SHROOM1-203ENST00000378679 SMARCA2P51531 1590 aa20.5■□□□□ 0.87
SHROOM1-203ENST00000378679 NEUROD1Q13562 356 aa20.5■□□□□ 0.87
SHROOM1-203ENST00000378679 SOGA1O94964 1423 aa20.49■□□□□ 0.87
SHROOM1-203ENST00000378679 CEP162Q5TB80 1403 aa20.49■□□□□ 0.87
SHROOM1-203ENST00000378679 GOLGA3Q08378 1498 aa20.48■□□□□ 0.87
SHROOM1-203ENST00000378679 KIF27Q86VH2 1401 aa20.47■□□□□ 0.87
SHROOM1-203ENST00000378679 ATAD2BQ9ULI0 1458 aa20.45■□□□□ 0.86
SHROOM1-203ENST00000378679 TOP2AP11388 1531 aaKnown RBP20.45■□□□□ 0.86
SHROOM1-203ENST00000378679 POLR3GLQ9BT43 218 aa20.44■□□□□ 0.86
SHROOM1-203ENST00000378679 ABCC8Q09428 1581 aa20.44■□□□□ 0.86
SHROOM1-203ENST00000378679 TNIKQ9UKE5 1360 aa20.42■□□□□ 0.86
SHROOM1-203ENST00000378679 GTF3C3Q9Y5Q9 886 aa20.42■□□□□ 0.86
SHROOM1-203ENST00000378679 DIEXFQ68CQ4 756 aaKnown RBP20.41■□□□□ 0.86
SHROOM1-203ENST00000378679 SMARCA4P51532 1647 aa20.41■□□□□ 0.86
SHROOM1-203ENST00000378679 CDK11AQ9UQ88 783 aaPredicted RBP20.41■□□□□ 0.86
SHROOM1-203ENST00000378679 CHMP7Q8WUX9 453 aaPredicted RBP20.4■□□□□ 0.86
SHROOM1-203ENST00000378679 CEP164Q9UPV0 1460 aa20.37■□□□□ 0.85
SHROOM1-203ENST00000378679 ZNF777Q9ULD5 760 aaPredicted RBP20.37■□□□□ 0.85
SHROOM1-203ENST00000378679 MYT1Q01538 1121 aa20.32■□□□□ 0.84
SHROOM1-203ENST00000378679 CNGB1Q14028 1251 aaPredicted RBP20.31■□□□□ 0.84
SHROOM1-203ENST00000378679 SCAF1Q9H7N4 1312 aaKnown RBP20.3■□□□□ 0.84
SHROOM1-203ENST00000378679 CUX2O14529 1486 aa20.27■□□□□ 0.84
SHROOM1-203ENST00000378679 CADPSQ9ULU8 1353 aa20.25■□□□□ 0.83
SHROOM1-203ENST00000378679 MTUS2Q5JR59 1369 aa20.24■□□□□ 0.83
SHROOM1-203ENST00000378679 CARMIL1Q5VZK9 1371 aa20.22■□□□□ 0.83
SHROOM1-203ENST00000378679 ERCC6Q03468 1493 aa20.19■□□□□ 0.82
SHROOM1-203ENST00000378679 ZNF316A6NFI3 1004 aaPredicted RBP20.19■□□□□ 0.82
SHROOM1-203ENST00000378679 ZNF326Q5BKZ1 582 aaKnown RBP20.19■□□□□ 0.82
SHROOM1-203ENST00000378679 CHIC2Q9UKJ5 165 aa20.18■□□□□ 0.82
SHROOM1-203ENST00000378679 NEFLP07196 543 aa20.17■□□□□ 0.82
SHROOM1-203ENST00000378679 PDS5BQ9NTI5 1447 aa20.14■□□□□ 0.81
SHROOM1-203ENST00000378679 ACIN1Q9UKV3 1341 aaKnown RBP20.13■□□□□ 0.81
SHROOM1-203ENST00000378679 TDRD9Q8NDG6 1382 aaKnown RBP20.12■□□□□ 0.81
SHROOM1-203ENST00000378679 ERICH6Q7L0X2 663 aa20.06■□□□□ 0.8
SHROOM1-203ENST00000378679 RUSC2Q8N2Y8 1516 aa20.05■□□□□ 0.8
SHROOM1-203ENST00000378679 NCAPD3P42695 1498 aa20.05■□□□□ 0.8
SHROOM1-203ENST00000378679 NPM1P06748 294 aaKnown RBP eCLIP20.04■□□□□ 0.8
SHROOM1-203ENST00000378679 EIF4G1Q04637 1599 aaKnown RBP20.01■□□□□ 0.79
SHROOM1-203ENST00000378679 PLEKHD1A6NEE1 506 aa19.98■□□□□ 0.79
SHROOM1-203ENST00000378679 TSPY4P0CV99 314 aa19.98■□□□□ 0.79
SHROOM1-203ENST00000378679 TSPY10P0CW01 314 aa19.98■□□□□ 0.79
SHROOM1-203ENST00000378679 RRP7BPQ9NSQ0 103 aa19.97■□□□□ 0.79
SHROOM1-203ENST00000378679 VPS8Q8N3P4 1428 aa19.96■□□□□ 0.79
SHROOM1-203ENST00000378679 TONSLQ96HA7 1378 aa19.96■□□□□ 0.79
SHROOM1-203ENST00000378679 SLC4A1APQ9BWU0 796 aaKnown RBP19.94■□□□□ 0.78
SHROOM1-203ENST00000378679 KCNH8Q96L42 1107 aa19.94■□□□□ 0.78
SHROOM1-203ENST00000378679 FANCD2Q9BXW9 1451 aa19.94■□□□□ 0.78
SHROOM1-203ENST00000378679 RAPGEF2Q9Y4G8 1499 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms