RNA–Protein interactions for RNA: ENST00000378060.8

VPS36-201, Transcript of vacuolar protein sorting 36 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS36, Length 4,417 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-201ENST00000378060 FBLN2P98095 1184 aa11.97□□□□□ -0.49
VPS36-201ENST00000378060 SNAPC4Q5SXM2 1469 aa11.97□□□□□ -0.49
VPS36-201ENST00000378060 RAPGEF2Q9Y4G8 1499 aa11.96□□□□□ -0.49
VPS36-201ENST00000378060 DAXXQ9UER7 740 aaPredicted RBP11.95□□□□□ -0.5
VPS36-201ENST00000378060 GRIN2BQ13224 1484 aa11.94□□□□□ -0.5
VPS36-201ENST00000378060 GTF3C3Q9Y5Q9 886 aa11.93□□□□□ -0.5
VPS36-201ENST00000378060 CARMIL1Q5VZK9 1371 aa11.92□□□□□ -0.5
VPS36-201ENST00000378060 EEA1Q15075 1411 aa11.92□□□□□ -0.5
VPS36-201ENST00000378060 ERICH3Q5RHP9 1530 aa11.91□□□□□ -0.5
VPS36-201ENST00000378060 ADAMTS12P58397 1594 aa11.91□□□□□ -0.5
VPS36-201ENST00000378060 ZNF316A6NFI3 1004 aaPredicted RBP11.9□□□□□ -0.5
VPS36-201ENST00000378060 PRXQ9BXM0 1461 aa11.9□□□□□ -0.5
VPS36-201ENST00000378060 CHD1O14646 1710 aa11.88□□□□□ -0.51
VPS36-201ENST00000378060 CUL7Q14999 1698 aa11.88□□□□□ -0.51
VPS36-201ENST00000378060 KIF21BO75037 1637 aa11.87□□□□□ -0.51
VPS36-201ENST00000378060 POLR3GLQ9BT43 218 aa11.87□□□□□ -0.51
VPS36-201ENST00000378060 ACIN1Q9UKV3 1341 aaKnown RBP11.87□□□□□ -0.51
VPS36-201ENST00000378060 CHMP7Q8WUX9 453 aaPredicted RBP11.87□□□□□ -0.51
VPS36-201ENST00000378060 GOLGA3Q08378 1498 aa11.85□□□□□ -0.51
VPS36-201ENST00000378060 FHAD1B1AJZ9 1412 aa11.85□□□□□ -0.51
VPS36-201ENST00000378060 MAGI1Q96QZ7 1491 aaPredicted RBP11.84□□□□□ -0.51
VPS36-201ENST00000378060 SYNJ2O15056 1496 aa11.83□□□□□ -0.52
VPS36-201ENST00000378060 GRIN2AQ12879 1464 aa11.83□□□□□ -0.52
VPS36-201ENST00000378060 CEP170Q5SW79 1584 aa11.81□□□□□ -0.52
VPS36-201ENST00000378060 FAM50AQ14320 339 aaKnown RBP11.81□□□□□ -0.52
VPS36-201ENST00000378060 RTL5Q5HYW3 569 aaPredicted RBP11.81□□□□□ -0.52
VPS36-201ENST00000378060 ANP32CO43423 234 aa11.78□□□□□ -0.52
VPS36-201ENST00000378060 P3H3Q8IVL6 736 aa11.78□□□□□ -0.52
VPS36-201ENST00000378060 CTTNBP2Q8WZ74 1663 aa11.78□□□□□ -0.52
VPS36-201ENST00000378060 CLSPNQ9HAW4 1339 aa11.77□□□□□ -0.52
VPS36-201ENST00000378060 CEP162Q5TB80 1403 aa11.75□□□□□ -0.53
VPS36-201ENST00000378060 NEUROD1Q13562 356 aa11.74□□□□□ -0.53
VPS36-201ENST00000378060 TNIKQ9UKE5 1360 aa11.74□□□□□ -0.53
VPS36-201ENST00000378060 CDK11AQ9UQ88 783 aaPredicted RBP11.72□□□□□ -0.53
VPS36-201ENST00000378060 CNGB1Q14028 1251 aaPredicted RBP11.72□□□□□ -0.53
VPS36-201ENST00000378060 TRIM52Q96A61 297 aa11.71□□□□□ -0.53
VPS36-201ENST00000378060 NUP160Q12769 1436 aa11.71□□□□□ -0.53
VPS36-201ENST00000378060 IQGAP2Q13576 1575 aa11.71□□□□□ -0.53
VPS36-201ENST00000378060 MYT1LQ9UL68 1186 aa11.7□□□□□ -0.54
VPS36-201ENST00000378060 CLIP1P30622 1438 aa11.69□□□□□ -0.54
VPS36-201ENST00000378060 ERCC6L2Q5T890 1561 aa11.69□□□□□ -0.54
VPS36-201ENST00000378060 BCANQ96GW7 911 aa11.68□□□□□ -0.54
VPS36-201ENST00000378060 KIAA0586Q9BVV6 1533 aa11.67□□□□□ -0.54
VPS36-201ENST00000378060 FHOD3Q2V2M9 1422 aa11.67□□□□□ -0.54
VPS36-201ENST00000378060 ARHGAP35Q9NRY4 1499 aa11.67□□□□□ -0.54
VPS36-201ENST00000378060 OSCARQ8IYS5 282 aa11.67□□□□□ -0.54
VPS36-201ENST00000378060 ARAP1Q96P48 1450 aa11.66□□□□□ -0.54
VPS36-201ENST00000378060 JPH4Q96JJ6 628 aa11.66□□□□□ -0.54
VPS36-201ENST00000378060 CLASP1Q7Z460 1538 aa11.66□□□□□ -0.54
VPS36-201ENST00000378060 ARID3CA6NKF2 412 aa11.64□□□□□ -0.55
VPS36-201ENST00000378060 DISP1Q96F81 1524 aa11.63□□□□□ -0.55
VPS36-201ENST00000378060 PRG4Q92954 1404 aaPredicted RBP11.63□□□□□ -0.55
VPS36-201ENST00000378060 SAMD9Q5K651 1589 aa11.61□□□□□ -0.55
VPS36-201ENST00000378060 KIAA0556O60303 1618 aa11.61□□□□□ -0.55
VPS36-201ENST00000378060 UGGT2Q9NYU1 1516 aa11.6□□□□□ -0.55
VPS36-201ENST00000378060 SHROOM2Q13796 1616 aa11.59□□□□□ -0.55
VPS36-201ENST00000378060 EFCAB5A4FU69 1503 aa11.55□□□□□ -0.56
VPS36-201ENST00000378060 PCF11O94913 1555 aaKnown RBP11.55□□□□□ -0.56
VPS36-201ENST00000378060 PLB1Q6P1J6 1458 aa11.54□□□□□ -0.56
VPS36-201ENST00000378060 SLC4A1APQ9BWU0 796 aaKnown RBP11.54□□□□□ -0.56
VPS36-201ENST00000378060 CARMIL2Q6F5E8 1435 aa11.53□□□□□ -0.56
VPS36-201ENST00000378060 LRRIQ1Q96JM4 1722 aa11.53□□□□□ -0.56
VPS36-201ENST00000378060 ARHGEF11O15085 1522 aa11.52□□□□□ -0.56
VPS36-201ENST00000378060 VPS8Q8N3P4 1428 aa11.52□□□□□ -0.57
VPS36-201ENST00000378060 ZNF326Q5BKZ1 582 aaKnown RBP11.52□□□□□ -0.57
VPS36-201ENST00000378060 RIMBP3CA6NJZ7 1639 aa11.51□□□□□ -0.57
VPS36-201ENST00000378060 RIMBP3BA6NNM3 1639 aa11.51□□□□□ -0.57
VPS36-201ENST00000378060 RIMBP3Q9UFD9 1639 aa11.51□□□□□ -0.57
VPS36-201ENST00000378060 ANP32AP39687 249 aaKnown RBP11.51□□□□□ -0.57
VPS36-201ENST00000378060 SCAF1Q9H7N4 1312 aaKnown RBP11.5□□□□□ -0.57
VPS36-201ENST00000378060 FKBP8Q14318 412 aa11.49□□□□□ -0.57
VPS36-201ENST00000378060 PTPRGP23470 1445 aa11.49□□□□□ -0.57
VPS36-201ENST00000378060 TONSLQ96HA7 1378 aa11.49□□□□□ -0.57
VPS36-201ENST00000378060 CYB5RLQ6IPT4 315 aa11.48□□□□□ -0.57
VPS36-201ENST00000378060 CDK13Q14004 1512 aaKnown RBP11.48□□□□□ -0.57
VPS36-201ENST00000378060 RAPGEF6Q8TEU7 1601 aa11.46□□□□□ -0.57
VPS36-201ENST00000378060 FMN1Q68DA7 1419 aa11.46□□□□□ -0.57
VPS36-201ENST00000378060 KANK4Q5T7N3 995 aaPredicted RBP11.46□□□□□ -0.58
VPS36-201ENST00000378060 DDX10Q13206 875 aaKnown RBP11.45□□□□□ -0.58
VPS36-201ENST00000378060 NUP153P49790 1475 aaKnown RBP11.45□□□□□ -0.58
VPS36-201ENST00000378060 CASKIN1Q8WXD9 1431 aa11.43□□□□□ -0.58
VPS36-201ENST00000378060 ADCY10Q96PN6 1610 aa11.43□□□□□ -0.58
VPS36-201ENST00000378060 HNRNPUQ00839 825 aaKnown RBP eCLIP11.43□□□□□ -0.58
VPS36-201ENST00000378060 ABCA8O94911 1581 aa11.43□□□□□ -0.58
VPS36-201ENST00000378060 FYCO1Q9BQS8 1478 aa11.42□□□□□ -0.58
VPS36-201ENST00000378060 MIER1Q8N108 512 aa11.42□□□□□ -0.58
VPS36-201ENST00000378060 HECW1Q76N89 1606 aa11.41□□□□□ -0.58
VPS36-201ENST00000378060 UACAQ9BZF9 1416 aa11.41□□□□□ -0.58
VPS36-201ENST00000378060 MAGI3Q5TCQ9 1506 aa11.41□□□□□ -0.58
VPS36-201ENST00000378060 EPRSP07814 1512 aaKnown RBP11.4□□□□□ -0.58
VPS36-201ENST00000378060 ZBTB47Q9UFB7 747 aaPredicted RBP11.4□□□□□ -0.58
VPS36-201ENST00000378060 TIAM1Q13009 1591 aa11.39□□□□□ -0.59
VPS36-201ENST00000378060 ABCC2Q92887 1545 aa11.38□□□□□ -0.59
VPS36-201ENST00000378060 CANXP27824 592 aaKnown RBP11.38□□□□□ -0.59
VPS36-201ENST00000378060 CFAP43Q8NDM7 1665 aa11.38□□□□□ -0.59
VPS36-201ENST00000378060 ATP10BO94823 1461 aa11.37□□□□□ -0.59
VPS36-201ENST00000378060 ZCCHC11Q5TAX3 1644 aaKnown RBP11.37□□□□□ -0.59
VPS36-201ENST00000378060 DNAJC5Q9H3Z4 198 aa11.36□□□□□ -0.59
VPS36-201ENST00000378060 KCNH8Q96L42 1107 aa11.34□□□□□ -0.59
VPS36-201ENST00000378060 LRRC9Q6ZRR7 1453 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms