RNA–Protein interactions for RNA: ENST00000375750.7

MSH5-203, Transcript of mutS homolog 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MSH5, Length 2,775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-203ENST00000375750 GAPVD1Q14C86 1478 aa22.52■■□□□ 1.2
MSH5-203ENST00000375750 ERCC6Q03468 1493 aa22.52■■□□□ 1.2
MSH5-203ENST00000375750 TARBP1Q13395 1621 aaKnown RBP22.51■■□□□ 1.19
MSH5-203ENST00000375750 ARAP1Q96P48 1450 aa22.5■■□□□ 1.19
MSH5-203ENST00000375750 ABCA5Q8WWZ7 1642 aa22.49■■□□□ 1.19
MSH5-203ENST00000375750 APLP2Q06481 763 aa22.46■■□□□ 1.19
MSH5-203ENST00000375750 ARHGAP35Q9NRY4 1499 aa22.46■■□□□ 1.19
MSH5-203ENST00000375750 AQRO60306 1485 aaKnown RBP eCLIP22.45■■□□□ 1.182e-8■■■■■ 33.7
MSH5-203ENST00000375750 WDR62O43379 1518 aa22.44■■□□□ 1.18
MSH5-203ENST00000375750 CUL7Q14999 1698 aa22.43■■□□□ 1.18
MSH5-203ENST00000375750 P3H3Q8IVL6 736 aa22.38■■□□□ 1.17
MSH5-203ENST00000375750 ZNF608Q9ULD9 1512 aaPredicted RBP22.37■■□□□ 1.17
MSH5-203ENST00000375750 IFT140Q96RY7 1462 aa22.35■■□□□ 1.17
MSH5-203ENST00000375750 THOC2Q8NI27 1593 aaKnown RBP22.32■■□□□ 1.16
MSH5-203ENST00000375750 PBRM1Q86U86 1689 aa22.29■■□□□ 1.16
MSH5-203ENST00000375750 KANK4Q5T7N3 995 aaPredicted RBP22.28■■□□□ 1.16
MSH5-203ENST00000375750 GRIN2BQ13224 1484 aa22.26■■□□□ 1.15
MSH5-203ENST00000375750 FHAD1B1AJZ9 1412 aa22.24■■□□□ 1.15
MSH5-203ENST00000375750 CTTNBP2Q8WZ74 1663 aa22.24■■□□□ 1.15
MSH5-203ENST00000375750 FHOD3Q2V2M9 1422 aa22.23■■□□□ 1.15
MSH5-203ENST00000375750 DHX57Q6P158 1386 aaKnown RBP22.21■■□□□ 1.15
MSH5-203ENST00000375750 ADAMTS12P58397 1594 aa22.19■■□□□ 1.14
MSH5-203ENST00000375750 ATP1B4Q9UN42 357 aaPredicted RBP22.18■■□□□ 1.14
MSH5-203ENST00000375750 EIF4G3O43432 1585 aaKnown RBP22.17■■□□□ 1.14
MSH5-203ENST00000375750 ITGAEP38570 1179 aa22.16■■□□□ 1.14
MSH5-203ENST00000375750 SNAPC4Q5SXM2 1469 aa22.15■■□□□ 1.14
MSH5-203ENST00000375750 EFCAB5A4FU69 1503 aa22.14■■□□□ 1.13
MSH5-203ENST00000375750 PCF11O94913 1555 aaKnown RBP22.07■■□□□ 1.12
MSH5-203ENST00000375750 FBLN2P98095 1184 aa22.07■■□□□ 1.12
MSH5-203ENST00000375750 CHMP7Q8WUX9 453 aaPredicted RBP22.05■■□□□ 1.12
MSH5-203ENST00000375750 SAMD9Q5K651 1589 aa22.05■■□□□ 1.12
MSH5-203ENST00000375750 TIAM1Q13009 1591 aa22.04■■□□□ 1.12
MSH5-203ENST00000375750 FMN1Q68DA7 1419 aa22.02■■□□□ 1.12
MSH5-203ENST00000375750 SUPT16HQ9Y5B9 1047 aaKnown RBP22.02■■□□□ 1.12
MSH5-203ENST00000375750 IQGAP2Q13576 1575 aa22.02■■□□□ 1.12
MSH5-203ENST00000375750 GRIN2AQ12879 1464 aa22.02■■□□□ 1.12
MSH5-203ENST00000375750 KCNH8Q96L42 1107 aa22.02■■□□□ 1.12
MSH5-203ENST00000375750 CASKIN1Q8WXD9 1431 aa22.01■■□□□ 1.11
MSH5-203ENST00000375750 MAGI1Q96QZ7 1491 aaPredicted RBP22■■□□□ 1.11
MSH5-203ENST00000375750 MAP3K1Q13233 1512 aa21.99■■□□□ 1.11
MSH5-203ENST00000375750 CLSPNQ9HAW4 1339 aa21.99■■□□□ 1.11
MSH5-203ENST00000375750 FYCO1Q9BQS8 1478 aa21.99■■□□□ 1.11
MSH5-203ENST00000375750 LRRC9Q6ZRR7 1453 aa21.98■■□□□ 1.11
MSH5-203ENST00000375750 SYNJ2O15056 1496 aa21.96■■□□□ 1.11
MSH5-203ENST00000375750 MYT1Q01538 1121 aa21.95■■□□□ 1.1
MSH5-203ENST00000375750 KIAA0586Q9BVV6 1533 aa21.95■■□□□ 1.1
MSH5-203ENST00000375750 RRBP1Q9P2E9 1410 aaKnown RBP21.93■■□□□ 1.1
MSH5-203ENST00000375750 CCNB3Q8WWL7 1395 aa21.91■■□□□ 1.1
MSH5-203ENST00000375750 CFAP43Q8NDM7 1665 aa21.9■■□□□ 1.1
MSH5-203ENST00000375750 UGGT2Q9NYU1 1516 aa21.89■■□□□ 1.1
MSH5-203ENST00000375750 CEP170Q5SW79 1584 aa21.89■■□□□ 1.09
MSH5-203ENST00000375750 PHLDB1Q86UU1 1377 aa21.88■■□□□ 1.09
MSH5-203ENST00000375750 DISP1Q96F81 1524 aa21.85■■□□□ 1.09
MSH5-203ENST00000375750 ARID3CA6NKF2 412 aa21.84■■□□□ 1.09
MSH5-203ENST00000375750 RAB3GAP2Q9H2M9 1393 aa21.83■■□□□ 1.09
MSH5-203ENST00000375750 LRRIQ1Q96JM4 1722 aa21.83■■□□□ 1.09
MSH5-203ENST00000375750 SIN3AQ96ST3 1273 aa21.82■■□□□ 1.08
MSH5-203ENST00000375750 NUP160Q12769 1436 aa21.81■■□□□ 1.08
MSH5-203ENST00000375750 JPH4Q96JJ6 628 aa21.81■■□□□ 1.08
MSH5-203ENST00000375750 MTUS2Q5JR59 1369 aa21.81■■□□□ 1.08
MSH5-203ENST00000375750 BCANQ96GW7 911 aa21.8■■□□□ 1.08
MSH5-203ENST00000375750 KIAA0556O60303 1618 aa21.8■■□□□ 1.08
MSH5-203ENST00000375750 HIRIP3Q9BW71 556 aaPredicted RBP21.78■■□□□ 1.08
MSH5-203ENST00000375750 TSHZ2Q9NRE2 1034 aa21.78■■□□□ 1.08
MSH5-203ENST00000375750 FAM50AQ14320 339 aaKnown RBP21.77■■□□□ 1.08
MSH5-203ENST00000375750 DDX10Q13206 875 aaKnown RBP21.76■■□□□ 1.07
MSH5-203ENST00000375750 MAPKBP1O60336 1514 aa21.75■■□□□ 1.07
MSH5-203ENST00000375750 EPRSP07814 1512 aaKnown RBP21.72■■□□□ 1.07
MSH5-203ENST00000375750 HECW1Q76N89 1606 aa21.72■■□□□ 1.07
MSH5-203ENST00000375750 CDK13Q14004 1512 aaKnown RBP21.71■■□□□ 1.07
MSH5-203ENST00000375750 MAGI3Q5TCQ9 1506 aa21.7■■□□□ 1.06
MSH5-203ENST00000375750 CCDC18Q5T9S5 1454 aa21.7■■□□□ 1.06
MSH5-203ENST00000375750 CARMIL2Q6F5E8 1435 aa21.67■■□□□ 1.06
MSH5-203ENST00000375750 NCOA2Q15596 1464 aa21.67■■□□□ 1.06
MSH5-203ENST00000375750 SETD5Q9C0A6 1442 aa21.65■■□□□ 1.06
MSH5-203ENST00000375750 CHD1O14646 1710 aa21.64■■□□□ 1.06
MSH5-203ENST00000375750 EHBP1L1Q8N3D4 1523 aa21.64■■□□□ 1.05
MSH5-203ENST00000375750 NUP153P49790 1475 aaKnown RBP21.64■■□□□ 1.05
MSH5-203ENST00000375750 PLB1Q6P1J6 1458 aa21.64■■□□□ 1.05
MSH5-203ENST00000375750 FGD6Q6ZV73 1430 aa21.63■■□□□ 1.05
MSH5-203ENST00000375750 FKBP8Q14318 412 aa21.63■■□□□ 1.05
MSH5-203ENST00000375750 RAPGEF6Q8TEU7 1601 aa21.61■■□□□ 1.05
MSH5-203ENST00000375750 SUPT6HQ7KZ85 1726 aaKnown RBP21.6■■□□□ 1.05
MSH5-203ENST00000375750 PRG4Q92954 1404 aaPredicted RBP21.6■■□□□ 1.05
MSH5-203ENST00000375750 MYOM3Q5VTT5 1437 aa21.58■■□□□ 1.05
MSH5-203ENST00000375750 TRIM52Q96A61 297 aa21.57■■□□□ 1.04
MSH5-203ENST00000375750 PPP1R15AO75807 674 aaPredicted RBP21.55■■□□□ 1.04
MSH5-203ENST00000375750 ARHGEF11O15085 1522 aa21.55■■□□□ 1.04
MSH5-203ENST00000375750 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.55■■□□□ 1.04
MSH5-203ENST00000375750 CDK11AQ9UQ88 783 aaPredicted RBP21.52■■□□□ 1.04
MSH5-203ENST00000375750 PTPRGP23470 1445 aa21.49■■□□□ 1.03
MSH5-203ENST00000375750 PTPRKQ15262 1439 aa21.48■■□□□ 1.03
MSH5-203ENST00000375750 PTPN23Q9H3S7 1636 aa21.46■■□□□ 1.03
MSH5-203ENST00000375750 ABCA8O94911 1581 aa21.45■■□□□ 1.02
MSH5-203ENST00000375750 ERCC6L2Q5T890 1561 aa21.43■■□□□ 1.02
MSH5-203ENST00000375750 ANP32EQ9BTT0 268 aa21.43■■□□□ 1.02
MSH5-203ENST00000375750 ATP10BO94823 1461 aa21.42■■□□□ 1.02
MSH5-203ENST00000375750 TROQ12816 1431 aaPredicted RBP21.42■■□□□ 1.02
MSH5-203ENST00000375750 SHROOM2Q13796 1616 aa21.42■■□□□ 1.02
MSH5-203ENST00000375750 CHIC2Q9UKJ5 165 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms