RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ADAMTS12P58397 1594 aa21.62■■□□□ 1.05
PTPRF-202ENST00000372405 FHAD1B1AJZ9 1412 aa21.58■■□□□ 1.05
PTPRF-202ENST00000372405 SNAPC4Q5SXM2 1469 aa21.52■■□□□ 1.04
PTPRF-202ENST00000372405 EFCAB5A4FU69 1503 aa21.46■■□□□ 1.03
PTPRF-202ENST00000372405 TTBK1Q5TCY1 1321 aaPredicted RBP21.46■■□□□ 1.03
PTPRF-202ENST00000372405 MAGI1Q96QZ7 1491 aaPredicted RBP21.44■■□□□ 1.02
PTPRF-202ENST00000372405 SAMD9Q5K651 1589 aa21.42■■□□□ 1.02
PTPRF-202ENST00000372405 GRIN2AQ12879 1464 aa21.4■■□□□ 1.02
PTPRF-202ENST00000372405 FHOD3Q2V2M9 1422 aa21.4■■□□□ 1.02
PTPRF-202ENST00000372405 P3H3Q8IVL6 736 aa21.39■■□□□ 1.02
PTPRF-202ENST00000372405 IQGAP2Q13576 1575 aa21.38■■□□□ 1.01
PTPRF-202ENST00000372405 SYNJ2O15056 1496 aa21.37■■□□□ 1.01
PTPRF-202ENST00000372405 APLP2Q06481 763 aa21.36■■□□□ 1.01
PTPRF-202ENST00000372405 PCF11O94913 1555 aaKnown RBP21.34■■□□□ 1.01
PTPRF-202ENST00000372405 KIAA0586Q9BVV6 1533 aa21.3■■□□□ 1
PTPRF-202ENST00000372405 CEP170Q5SW79 1584 aa21.3■■□□□ 1
PTPRF-202ENST00000372405 KANK4Q5T7N3 995 aaPredicted RBP21.3■■□□□ 1
PTPRF-202ENST00000372405 CHMP7Q8WUX9 453 aaPredicted RBP21.28■■□□□ 1
PTPRF-202ENST00000372405 UGGT2Q9NYU1 1516 aa21.28■■□□□ 1
PTPRF-202ENST00000372405 TIAM1Q13009 1591 aa21.27■■□□□ 1
PTPRF-202ENST00000372405 MAP3K1Q13233 1512 aa21.26■□□□□ 0.99
PTPRF-202ENST00000372405 FMN1Q68DA7 1419 aa21.25■□□□□ 0.99
PTPRF-202ENST00000372405 CASKIN1Q8WXD9 1431 aa21.25■□□□□ 0.99
PTPRF-202ENST00000372405 FYCO1Q9BQS8 1478 aa21.25■□□□□ 0.99
PTPRF-202ENST00000372405 NUP160Q12769 1436 aa21.24■□□□□ 0.99
PTPRF-202ENST00000372405 CFAP43Q8NDM7 1665 aa21.23■□□□□ 0.99
PTPRF-202ENST00000372405 FBLN2P98095 1184 aa21.23■□□□□ 0.99
PTPRF-202ENST00000372405 DISP1Q96F81 1524 aa21.2■□□□□ 0.98
PTPRF-202ENST00000372405 LRRIQ1Q96JM4 1722 aa21.19■□□□□ 0.98
PTPRF-202ENST00000372405 KIAA0556O60303 1618 aa21.18■□□□□ 0.98
PTPRF-202ENST00000372405 CHD1O14646 1710 aa21.18■□□□□ 0.98
PTPRF-202ENST00000372405 HRCP23327 699 aa21.16■□□□□ 0.98
PTPRF-202ENST00000372405 LRRC9Q6ZRR7 1453 aa21.16■□□□□ 0.98
PTPRF-202ENST00000372405 ATP1B4Q9UN42 357 aaPredicted RBP21.13■□□□□ 0.97
PTPRF-202ENST00000372405 JPH4Q96JJ6 628 aa21.06■□□□□ 0.96
PTPRF-202ENST00000372405 RRBP1Q9P2E9 1410 aaKnown RBP21.05■□□□□ 0.96
PTPRF-202ENST00000372405 HECW1Q76N89 1606 aa21.05■□□□□ 0.96
PTPRF-202ENST00000372405 PHLDB1Q86UU1 1377 aa21■□□□□ 0.95
PTPRF-202ENST00000372405 EPRSP07814 1512 aaKnown RBP20.99■□□□□ 0.95
PTPRF-202ENST00000372405 CCDC18Q5T9S5 1454 aa20.99■□□□□ 0.95
PTPRF-202ENST00000372405 CARMIL2Q6F5E8 1435 aa20.98■□□□□ 0.95
PTPRF-202ENST00000372405 MAGI3Q5TCQ9 1506 aa20.98■□□□□ 0.95
PTPRF-202ENST00000372405 RAPGEF6Q8TEU7 1601 aa20.98■□□□□ 0.95
PTPRF-202ENST00000372405 HNRNPUL2Q1KMD3 747 aaKnown RBP20.97■□□□□ 0.95
PTPRF-202ENST00000372405 CDK13Q14004 1512 aaKnown RBP20.96■□□□□ 0.95
PTPRF-202ENST00000372405 SHROOM2Q13796 1616 aa20.96■□□□□ 0.95
PTPRF-202ENST00000372405 CCNB3Q8WWL7 1395 aa20.96■□□□□ 0.95
PTPRF-202ENST00000372405 NUP153P49790 1475 aaKnown RBP20.95■□□□□ 0.94
PTPRF-202ENST00000372405 MTUS2Q5JR59 1369 aa20.94■□□□□ 0.94
PTPRF-202ENST00000372405 PRG4Q92954 1404 aaPredicted RBP20.93■□□□□ 0.94
PTPRF-202ENST00000372405 PLB1Q6P1J6 1458 aa20.93■□□□□ 0.94
PTPRF-202ENST00000372405 EHBP1L1Q8N3D4 1523 aa20.93■□□□□ 0.94
PTPRF-202ENST00000372405 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.91■□□□□ 0.94
PTPRF-202ENST00000372405 CLASP1Q7Z460 1538 aa20.9■□□□□ 0.94
PTPRF-202ENST00000372405 SUPT6HQ7KZ85 1726 aaKnown RBP20.89■□□□□ 0.93
PTPRF-202ENST00000372405 ARID3CA6NKF2 412 aa20.88■□□□□ 0.93
PTPRF-202ENST00000372405 NCOA2Q15596 1464 aa20.88■□□□□ 0.93
PTPRF-202ENST00000372405 ARHGEF11O15085 1522 aa20.87■□□□□ 0.93
PTPRF-202ENST00000372405 ABCA8O94911 1581 aa20.87■□□□□ 0.93
PTPRF-202ENST00000372405 ERCC6L2Q5T890 1561 aa20.86■□□□□ 0.93
PTPRF-202ENST00000372405 FGD6Q6ZV73 1430 aa20.81■□□□□ 0.92
PTPRF-202ENST00000372405 PTPRGP23470 1445 aa20.79■□□□□ 0.92
PTPRF-202ENST00000372405 MYOM3Q5VTT5 1437 aa20.79■□□□□ 0.92
PTPRF-202ENST00000372405 CCER1Q8TC90 406 aaPredicted RBP20.79■□□□□ 0.92
PTPRF-202ENST00000372405 ZEB1P37275 1124 aaPredicted RBP20.76■□□□□ 0.91
PTPRF-202ENST00000372405 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.76■□□□□ 0.919e-9■□□□□ 10.3
PTPRF-202ENST00000372405 FAM50AQ14320 339 aaKnown RBP20.76■□□□□ 0.91
PTPRF-202ENST00000372405 ITGAEP38570 1179 aa20.75■□□□□ 0.91
PTPRF-202ENST00000372405 ATP10BO94823 1461 aa20.73■□□□□ 0.91
PTPRF-202ENST00000372405 TROQ12816 1431 aaPredicted RBP20.71■□□□□ 0.91
PTPRF-202ENST00000372405 PTPN23Q9H3S7 1636 aa20.71■□□□□ 0.91
PTPRF-202ENST00000372405 CDK11AQ9UQ88 783 aaPredicted RBP20.69■□□□□ 0.9
PTPRF-202ENST00000372405 ADCY10Q96PN6 1610 aa20.69■□□□□ 0.9
PTPRF-202ENST00000372405 UACAQ9BZF9 1416 aa20.68■□□□□ 0.9
PTPRF-202ENST00000372405 KIF14Q15058 1648 aa20.68■□□□□ 0.9
PTPRF-202ENST00000372405 TCOF1Q13428 1488 aaKnown RBP20.66■□□□□ 0.9
PTPRF-202ENST00000372405 ABCC2Q92887 1545 aa20.64■□□□□ 0.89
PTPRF-202ENST00000372405 PTPRKQ15262 1439 aa20.64■□□□□ 0.89
PTPRF-202ENST00000372405 MIA2Q96PC5 1412 aa20.64■□□□□ 0.89
PTPRF-202ENST00000372405 RAB3GAP2Q9H2M9 1393 aa20.6■□□□□ 0.89
PTPRF-202ENST00000372405 DHX57Q6P158 1386 aaKnown RBP20.59■□□□□ 0.89
PTPRF-202ENST00000372405 SETD5Q9C0A6 1442 aa20.59■□□□□ 0.89
PTPRF-202ENST00000372405 PLEKHD1A6NEE1 506 aa20.58■□□□□ 0.89
PTPRF-202ENST00000372405 OSCARQ8IYS5 282 aa20.57■□□□□ 0.88
PTPRF-202ENST00000372405 ITSN2Q9NZM3 1697 aa20.57■□□□□ 0.88
PTPRF-202ENST00000372405 GPATCH8Q9UKJ3 1502 aaKnown RBP20.56■□□□□ 0.88
PTPRF-202ENST00000372405 ABCC10Q5T3U5 1492 aa20.56■□□□□ 0.88
PTPRF-202ENST00000372405 UHRF1BP1LA0JNW5 1464 aa20.56■□□□□ 0.88
PTPRF-202ENST00000372405 CDC42BPAQ5VT25 1732 aa20.55■□□□□ 0.88
PTPRF-202ENST00000372405 ZCCHC11Q5TAX3 1644 aaKnown RBP20.52■□□□□ 0.88
PTPRF-202ENST00000372405 ZNF644Q9H582 1327 aaPredicted RBP20.52■□□□□ 0.88
PTPRF-202ENST00000372405 HFM1A2PYH4 1435 aa20.51■□□□□ 0.87
PTPRF-202ENST00000372405 KDM5BQ9UGL1 1544 aa20.5■□□□□ 0.87
PTPRF-202ENST00000372405 DNMT1P26358 1616 aaKnown RBP20.49■□□□□ 0.87
PTPRF-202ENST00000372405 CAMSAP2Q08AD1 1489 aa20.48■□□□□ 0.87
PTPRF-202ENST00000372405 NAIPQ13075 1403 aa20.48■□□□□ 0.87
PTPRF-202ENST00000372405 CFDP1Q9UEE9 299 aaPredicted RBP20.46■□□□□ 0.87
PTPRF-202ENST00000372405 DAPK1P53355 1430 aa20.46■□□□□ 0.87
PTPRF-202ENST00000372405 ABCC5O15440 1437 aa20.45■□□□□ 0.86
PTPRF-202ENST00000372405 TTC37Q6PGP7 1564 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms