RNA–Protein interactions for RNA: ENST00000372077.8

VEGFA-206, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best) BASIC

Gene VEGFA, Length 2,834 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-206ENST00000372077 CLIP1P30622 1438 aa29.33■■■□□ 2.29
VEGFA-206ENST00000372077 FBLN2P98095 1184 aa29.29■■■□□ 2.28
VEGFA-206ENST00000372077 NUP160Q12769 1436 aa29.26■■■□□ 2.27
VEGFA-206ENST00000372077 CEP170Q5SW79 1584 aa29.24■■■□□ 2.27
VEGFA-206ENST00000372077 CHD1O14646 1710 aa29.24■■■□□ 2.27
VEGFA-206ENST00000372077 KIAA0586Q9BVV6 1533 aa29.23■■■□□ 2.27
VEGFA-206ENST00000372077 RANGAP1P46060 587 aaPredicted RBP29.22■■■□□ 2.27
VEGFA-206ENST00000372077 IQGAP2Q13576 1575 aa29.2■■■□□ 2.26
VEGFA-206ENST00000372077 ARHGAP35Q9NRY4 1499 aa29.19■■■□□ 2.26
VEGFA-206ENST00000372077 EFCAB5A4FU69 1503 aa29.12■■■□□ 2.25
VEGFA-206ENST00000372077 ARAP1Q96P48 1450 aa29.11■■■□□ 2.25
VEGFA-206ENST00000372077 PPARGC1BQ86YN6 1023 aaKnown RBP29.11■■■□□ 2.25
VEGFA-206ENST00000372077 UGGT2Q9NYU1 1516 aa29.1■■■□□ 2.25
VEGFA-206ENST00000372077 SAMD9Q5K651 1589 aa29.08■■■□□ 2.25
VEGFA-206ENST00000372077 HRCP23327 699 aa29.03■■■□□ 2.24
VEGFA-206ENST00000372077 VPS8Q8N3P4 1428 aa29.03■■■□□ 2.24
VEGFA-206ENST00000372077 JPH4Q96JJ6 628 aa28.98■■■□□ 2.23
VEGFA-206ENST00000372077 P3H3Q8IVL6 736 aa28.97■■■□□ 2.23
VEGFA-206ENST00000372077 FHOD3Q2V2M9 1422 aa28.96■■■□□ 2.23
VEGFA-206ENST00000372077 CLASP1Q7Z460 1538 aa28.96■■■□□ 2.23
VEGFA-206ENST00000372077 DISP1Q96F81 1524 aa28.95■■■□□ 2.23
VEGFA-206ENST00000372077 KIAA0556O60303 1618 aa28.91■■■□□ 2.22
VEGFA-206ENST00000372077 SHROOM2Q13796 1616 aa28.9■■■□□ 2.22
VEGFA-206ENST00000372077 CARMIL2Q6F5E8 1435 aa28.85■■■□□ 2.21
VEGFA-206ENST00000372077 FMN1Q68DA7 1419 aa28.84■■■□□ 2.21
VEGFA-206ENST00000372077 OSCARQ8IYS5 282 aa28.83■■■□□ 2.21
VEGFA-206ENST00000372077 PRG4Q92954 1404 aaPredicted RBP28.82■■■□□ 2.2
VEGFA-206ENST00000372077 CASKIN1Q8WXD9 1431 aa28.76■■■□□ 2.19
VEGFA-206ENST00000372077 PCF11O94913 1555 aaKnown RBP28.75■■■□□ 2.19
VEGFA-206ENST00000372077 FYCO1Q9BQS8 1478 aa28.73■■■□□ 2.19
VEGFA-206ENST00000372077 ERCC6L2Q5T890 1561 aa28.68■■■□□ 2.18
VEGFA-206ENST00000372077 APLP2Q06481 763 aa28.66■■■□□ 2.18
VEGFA-206ENST00000372077 MAP3K1Q13233 1512 aa28.64■■■□□ 2.18
VEGFA-206ENST00000372077 PTPRGP23470 1445 aa28.6■■■□□ 2.17
VEGFA-206ENST00000372077 TTBK1Q5TCY1 1321 aaPredicted RBP28.59■■■□□ 2.17
VEGFA-206ENST00000372077 HECW1Q76N89 1606 aa28.58■■■□□ 2.17
VEGFA-206ENST00000372077 TIAM1Q13009 1591 aa28.58■■■□□ 2.17
VEGFA-206ENST00000372077 RAPGEF6Q8TEU7 1601 aa28.58■■■□□ 2.17
VEGFA-206ENST00000372077 ATP1B4Q9UN42 357 aaPredicted RBP28.57■■■□□ 2.16
VEGFA-206ENST00000372077 PLB1Q6P1J6 1458 aa28.55■■■□□ 2.16
VEGFA-206ENST00000372077 ABCA8O94911 1581 aa28.55■■■□□ 2.16
VEGFA-206ENST00000372077 LRRIQ1Q96JM4 1722 aa28.55■■■□□ 2.16
VEGFA-206ENST00000372077 CFAP43Q8NDM7 1665 aa28.55■■■□□ 2.16
VEGFA-206ENST00000372077 NUP153P49790 1475 aaKnown RBP28.5■■■□□ 2.15
VEGFA-206ENST00000372077 KANK4Q5T7N3 995 aaPredicted RBP28.5■■■□□ 2.15
VEGFA-206ENST00000372077 CCDC18Q5T9S5 1454 aa28.5■■■□□ 2.15
VEGFA-206ENST00000372077 EPRSP07814 1512 aaKnown RBP28.49■■■□□ 2.15
VEGFA-206ENST00000372077 LRRC9Q6ZRR7 1453 aa28.45■■■□□ 2.15
VEGFA-206ENST00000372077 UACAQ9BZF9 1416 aa28.45■■■□□ 2.14
VEGFA-206ENST00000372077 CDK13Q14004 1512 aaKnown RBP28.41■■■□□ 2.14
VEGFA-206ENST00000372077 ABCC2Q92887 1545 aa28.37■■■□□ 2.13
VEGFA-206ENST00000372077 UHRF1BP1LA0JNW5 1464 aa28.37■■■□□ 2.13
VEGFA-206ENST00000372077 ARHGEF11O15085 1522 aa28.35■■■□□ 2.13
VEGFA-206ENST00000372077 TRIM26Q12899 539 aaPredicted RBP28.34■■■□□ 2.13
VEGFA-206ENST00000372077 ATP10BO94823 1461 aa28.34■■■□□ 2.13
VEGFA-206ENST00000372077 ARID3CA6NKF2 412 aa28.33■■■□□ 2.13
VEGFA-206ENST00000372077 MAGI3Q5TCQ9 1506 aa28.32■■■□□ 2.12
VEGFA-206ENST00000372077 MTUS2Q5JR59 1369 aa28.31■■■□□ 2.12
VEGFA-206ENST00000372077 EHBP1L1Q8N3D4 1523 aa28.3■■■□□ 2.12
VEGFA-206ENST00000372077 CDK11AQ9UQ88 783 aaPredicted RBP28.26■■■□□ 2.11
VEGFA-206ENST00000372077 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.25■■■□□ 2.11
VEGFA-206ENST00000372077 HNRNPUL2Q1KMD3 747 aaKnown RBP28.25■■■□□ 2.11
VEGFA-206ENST00000372077 RIMBP3CA6NJZ7 1639 aa28.24■■■□□ 2.11
VEGFA-206ENST00000372077 RIMBP3BA6NNM3 1639 aa28.24■■■□□ 2.11
VEGFA-206ENST00000372077 RIMBP3Q9UFD9 1639 aa28.24■■■□□ 2.11
VEGFA-206ENST00000372077 ADCY10Q96PN6 1610 aa28.24■■■□□ 2.11
VEGFA-206ENST00000372077 KDM5BQ9UGL1 1544 aa28.23■■■□□ 2.11
VEGFA-206ENST00000372077 SUPT6HQ7KZ85 1726 aaKnown RBP28.2■■■□□ 2.1
VEGFA-206ENST00000372077 TROQ12816 1431 aaPredicted RBP28.19■■■□□ 2.1
VEGFA-206ENST00000372077 NCOA2Q15596 1464 aa28.17■■■□□ 2.1
VEGFA-206ENST00000372077 ZCCHC11Q5TAX3 1644 aaKnown RBP28.17■■■□□ 2.1
VEGFA-206ENST00000372077 PLEKHD1A6NEE1 506 aa28.16■■■□□ 2.1
VEGFA-206ENST00000372077 PHLDB1Q86UU1 1377 aa28.16■■■□□ 2.1
VEGFA-206ENST00000372077 RRBP1Q9P2E9 1410 aaKnown RBP28.11■■■□□ 2.09
VEGFA-206ENST00000372077 CYB5RLQ6IPT4 315 aa28.05■■■□□ 2.08
VEGFA-206ENST00000372077 KIF14Q15058 1648 aa28.05■■■□□ 2.08
VEGFA-206ENST00000372077 MYOM3Q5VTT5 1437 aa28.03■■■□□ 2.08
VEGFA-206ENST00000372077 CCNB3Q8WWL7 1395 aa28.02■■■□□ 2.08
VEGFA-206ENST00000372077 ABCC10Q5T3U5 1492 aa27.99■■■□□ 2.07
VEGFA-206ENST00000372077 FGD6Q6ZV73 1430 aa27.99■■■□□ 2.07
VEGFA-206ENST00000372077 NPM1P06748 294 aaKnown RBP eCLIP27.99■■■□□ 2.07
VEGFA-206ENST00000372077 WDR7Q9Y4E6 1490 aa27.95■■■□□ 2.06
VEGFA-206ENST00000372077 MIA2Q96PC5 1412 aa27.94■■■□□ 2.06
VEGFA-206ENST00000372077 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.94■■■□□ 2.063e-7■■□□□ 14.3
VEGFA-206ENST00000372077 ASXL2Q76L83 1435 aa27.93■■■□□ 2.06
VEGFA-206ENST00000372077 GPATCH8Q9UKJ3 1502 aaKnown RBP27.92■■■□□ 2.06
VEGFA-206ENST00000372077 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.9■■■□□ 2.062e-6■■□□□ 11.9
VEGFA-206ENST00000372077 ITSN2Q9NZM3 1697 aa27.89■■■□□ 2.06
VEGFA-206ENST00000372077 TCOF1Q13428 1488 aaKnown RBP27.88■■■□□ 2.05
VEGFA-206ENST00000372077 KCNH8Q96L42 1107 aa27.88■■■□□ 2.05
VEGFA-206ENST00000372077 PTPN23Q9H3S7 1636 aa27.88■■■□□ 2.05
VEGFA-206ENST00000372077 CDC42BPAQ5VT25 1732 aa27.87■■■□□ 2.05
VEGFA-206ENST00000372077 TTC37Q6PGP7 1564 aa27.85■■■□□ 2.05
VEGFA-206ENST00000372077 MAPKBP1O60336 1514 aa27.84■■■□□ 2.05
VEGFA-206ENST00000372077 FAM50AQ14320 339 aaKnown RBP27.84■■■□□ 2.05
VEGFA-206ENST00000372077 CFDP1Q9UEE9 299 aaPredicted RBP27.81■■■□□ 2.04
VEGFA-206ENST00000372077 PREX2Q70Z35 1606 aa27.79■■■□□ 2.04
VEGFA-206ENST00000372077 ABCA9Q8IUA7 1624 aa27.77■■■□□ 2.04
VEGFA-206ENST00000372077 CDC42BPBQ9Y5S2 1711 aa27.77■■■□□ 2.04
VEGFA-206ENST00000372077 MYO5CQ9NQX4 1742 aa27.76■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 122 ms