RNA–Protein interactions for RNA: ENST00000368298.2

LMNA-204, Transcript of lamin A/C, humanhuman

TSL 1 (best)

Gene LMNA, Length 1,475 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-204ENST00000368298 ARHGEF11O15085 1522 aa31.13■■■□□ 2.57
LMNA-204ENST00000368298 KIAA0586Q9BVV6 1533 aa31.11■■■□□ 2.57
LMNA-204ENST00000368298 SHROOM2Q13796 1616 aa31.09■■■□□ 2.57
LMNA-204ENST00000368298 FAM9AQ8IZU1 332 aaPredicted RBP31.02■■■□□ 2.56
LMNA-204ENST00000368298 JPH4Q96JJ6 628 aa31.01■■■□□ 2.56
LMNA-204ENST00000368298 KIF21BO75037 1637 aa30.94■■■□□ 2.54
LMNA-204ENST00000368298 IQGAP2Q13576 1575 aa30.94■■■□□ 2.54
LMNA-204ENST00000368298 PRG4Q92954 1404 aaPredicted RBP30.91■■■□□ 2.54
LMNA-204ENST00000368298 CTTNBP2Q8WZ74 1663 aa30.9■■■□□ 2.54
LMNA-204ENST00000368298 ARAP1Q96P48 1450 aa30.9■■■□□ 2.54
LMNA-204ENST00000368298 ERCC6L2Q5T890 1561 aa30.89■■■□□ 2.54
LMNA-204ENST00000368298 CYB5RLQ6IPT4 315 aa30.82■■■□□ 2.53
LMNA-204ENST00000368298 UGGT2Q9NYU1 1516 aa30.81■■■□□ 2.52
LMNA-204ENST00000368298 GOLGA3Q08378 1498 aa30.75■■■□□ 2.51
LMNA-204ENST00000368298 CARMIL2Q6F5E8 1435 aa30.74■■■□□ 2.51
LMNA-204ENST00000368298 DISP1Q96F81 1524 aa30.72■■■□□ 2.51
LMNA-204ENST00000368298 KIAA0556O60303 1618 aa30.64■■■□□ 2.49
LMNA-204ENST00000368298 TNIKQ9UKE5 1360 aa30.63■■■□□ 2.49
LMNA-204ENST00000368298 UBTFP17480 764 aaKnown RBP30.6■■■□□ 2.49
LMNA-204ENST00000368298 PTPRGP23470 1445 aa30.58■■■□□ 2.49
LMNA-204ENST00000368298 EHMT2Q96KQ7 1210 aa30.54■■■□□ 2.48
LMNA-204ENST00000368298 SAMD9Q5K651 1589 aa30.54■■■□□ 2.48
LMNA-204ENST00000368298 EFCAB5A4FU69 1503 aa30.45■■■□□ 2.46
LMNA-204ENST00000368298 ADCY10Q96PN6 1610 aa30.42■■■□□ 2.46
LMNA-204ENST00000368298 UHRF1BP1LA0JNW5 1464 aa30.4■■■□□ 2.46
LMNA-204ENST00000368298 UACAQ9BZF9 1416 aa30.4■■■□□ 2.46
LMNA-204ENST00000368298 TTBK1Q5TCY1 1321 aaPredicted RBP30.39■■■□□ 2.45
LMNA-204ENST00000368298 P3H3Q8IVL6 736 aa30.38■■■□□ 2.45
LMNA-204ENST00000368298 RANGAP1P46060 587 aaPredicted RBP30.37■■■□□ 2.45
LMNA-204ENST00000368298 ABCC2Q92887 1545 aa30.33■■■□□ 2.45
LMNA-204ENST00000368298 ARHGAP35Q9NRY4 1499 aa30.31■■■□□ 2.44
LMNA-204ENST00000368298 ABCA8O94911 1581 aa30.31■■■□□ 2.44
LMNA-204ENST00000368298 TRHP20396 242 aaPredicted RBP30.31■■■□□ 2.44
LMNA-204ENST00000368298 FHOD3Q2V2M9 1422 aa30.3■■■□□ 2.44
LMNA-204ENST00000368298 PLB1Q6P1J6 1458 aa30.3■■■□□ 2.44
LMNA-204ENST00000368298 NPM1P06748 294 aaKnown RBP eCLIP30.26■■■□□ 2.44
LMNA-204ENST00000368298 LOC105371045A0A1W2PR82 267 aa30.25■■■□□ 2.43
LMNA-204ENST00000368298 KDM5BQ9UGL1 1544 aa30.24■■■□□ 2.43
LMNA-204ENST00000368298 MAPKBP1O60336 1514 aa30.22■■■□□ 2.43
LMNA-204ENST00000368298 CLIP1P30622 1438 aa30.19■■■□□ 2.42
LMNA-204ENST00000368298 RAPGEF6Q8TEU7 1601 aa30.17■■■□□ 2.42
LMNA-204ENST00000368298 FMN1Q68DA7 1419 aa30.16■■■□□ 2.42
LMNA-204ENST00000368298 ZCCHC11Q5TAX3 1644 aaKnown RBP30.13■■■□□ 2.41
LMNA-204ENST00000368298 CEP162Q5TB80 1403 aa30.11■■■□□ 2.41
LMNA-204ENST00000368298 NUP153P49790 1475 aaKnown RBP30.08■■■□□ 2.41
LMNA-204ENST00000368298 ATP10BO94823 1461 aa30.06■■■□□ 2.4
LMNA-204ENST00000368298 ASXL2Q76L83 1435 aa30.06■■■□□ 2.4
LMNA-204ENST00000368298 ABCC10Q5T3U5 1492 aa30.03■■■□□ 2.4
LMNA-204ENST00000368298 KIF13AQ9H1H9 1805 aa29.98■■■□□ 2.39
LMNA-204ENST00000368298 DIP2BQ9P265 1576 aa29.97■■■□□ 2.39
LMNA-204ENST00000368298 HECW1Q76N89 1606 aa29.96■■■□□ 2.39
LMNA-204ENST00000368298 CASKIN1Q8WXD9 1431 aa29.95■■■□□ 2.39
LMNA-204ENST00000368298 WDR7Q9Y4E6 1490 aa29.95■■■□□ 2.38
LMNA-204ENST00000368298 ARID3CA6NKF2 412 aa29.92■■■□□ 2.38
LMNA-204ENST00000368298 PCF11O94913 1555 aaKnown RBP29.9■■■□□ 2.38
LMNA-204ENST00000368298 GLI2P10070 1586 aa29.9■■■□□ 2.38
LMNA-204ENST00000368298 FAM69CQ0P6D2 419 aa29.9■■■□□ 2.38
LMNA-204ENST00000368298 EPRSP07814 1512 aaKnown RBP29.9■■■□□ 2.38
LMNA-204ENST00000368298 FYCO1Q9BQS8 1478 aa29.89■■■□□ 2.38
LMNA-204ENST00000368298 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.85■■■□□ 2.37
LMNA-204ENST00000368298 HNRNPUL2Q1KMD3 747 aaKnown RBP29.85■■■□□ 2.37
LMNA-204ENST00000368298 CDK13Q14004 1512 aaKnown RBP29.85■■■□□ 2.37
LMNA-204ENST00000368298 ATP1B4Q9UN42 357 aaPredicted RBP29.84■■■□□ 2.37
LMNA-204ENST00000368298 LRRIQ1Q96JM4 1722 aa29.84■■■□□ 2.37
LMNA-204ENST00000368298 CCDC18Q5T9S5 1454 aa29.81■■■□□ 2.36
LMNA-204ENST00000368298 PLEKHD1A6NEE1 506 aa29.8■■■□□ 2.36
LMNA-204ENST00000368298 KCNH8Q96L42 1107 aa29.76■■■□□ 2.35
LMNA-204ENST00000368298 MAP3K4Q9Y6R4 1608 aa29.75■■■□□ 2.35
LMNA-204ENST00000368298 VPS8Q8N3P4 1428 aa29.75■■■□□ 2.35
LMNA-204ENST00000368298 CDK11AQ9UQ88 783 aaPredicted RBP29.74■■■□□ 2.35
LMNA-204ENST00000368298 CFAP43Q8NDM7 1665 aa29.7■■■□□ 2.35
LMNA-204ENST00000368298 ABCA9Q8IUA7 1624 aa29.69■■■□□ 2.34
LMNA-204ENST00000368298 TROQ12816 1431 aaPredicted RBP29.66■■■□□ 2.34
LMNA-204ENST00000368298 PPRC1Q5VV67 1664 aaKnown RBP29.66■■■□□ 2.34
LMNA-204ENST00000368298 TSPOAP1O95153 1857 aa29.65■■■□□ 2.34
LMNA-204ENST00000368298 CD109Q6YHK3 1445 aa29.65■■■□□ 2.34
LMNA-204ENST00000368298 MAGI3Q5TCQ9 1506 aa29.62■■■□□ 2.33
LMNA-204ENST00000368298 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.59■■■□□ 2.339e-7■■□□□ 11.4
LMNA-204ENST00000368298 TEX14Q8IWB6 1497 aa29.58■■■□□ 2.33
LMNA-204ENST00000368298 KIF14Q15058 1648 aa29.55■■■□□ 2.32
LMNA-204ENST00000368298 MAP3K1Q13233 1512 aa29.54■■■□□ 2.32
LMNA-204ENST00000368298 TTC37Q6PGP7 1564 aa29.53■■■□□ 2.32
LMNA-204ENST00000368298 TIAM1Q13009 1591 aa29.52■■■□□ 2.32
LMNA-204ENST00000368298 MTUS2Q5JR59 1369 aa29.47■■■□□ 2.31
LMNA-204ENST00000368298 PLCH2O75038 1416 aa29.45■■■□□ 2.31
LMNA-204ENST00000368298 EHBP1L1Q8N3D4 1523 aa29.45■■■□□ 2.31
LMNA-204ENST00000368298 PHLDB1Q86UU1 1377 aa29.44■■■□□ 2.3
LMNA-204ENST00000368298 ARAP3Q8WWN8 1544 aa29.44■■■□□ 2.3
LMNA-204ENST00000368298 NEO1Q92859 1461 aa29.42■■■□□ 2.3
LMNA-204ENST00000368298 MYO5CQ9NQX4 1742 aa29.42■■■□□ 2.3
LMNA-204ENST00000368298 KDM6BO15054 1643 aa29.4■■■□□ 2.3
LMNA-204ENST00000368298 LRRC9Q6ZRR7 1453 aa29.39■■■□□ 2.3
LMNA-204ENST00000368298 FANCAO15360 1455 aa29.37■■■□□ 2.29
LMNA-204ENST00000368298 COL17A1Q9UMD9 1497 aaPredicted RBP29.36■■■□□ 2.29
LMNA-204ENST00000368298 CFAP74Q9C0B2 1584 aa29.36■■■□□ 2.29
LMNA-204ENST00000368298 APLP2Q06481 763 aa29.36■■■□□ 2.29
LMNA-204ENST00000368298 KANK4Q5T7N3 995 aaPredicted RBP29.33■■■□□ 2.29
LMNA-204ENST00000368298 PREX2Q70Z35 1606 aa29.33■■■□□ 2.29
LMNA-204ENST00000368298 CDC42BPBQ9Y5S2 1711 aa29.33■■■□□ 2.29
LMNA-204ENST00000368298 CDC42BPAQ5VT25 1732 aa29.32■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms