RNA–Protein interactions for RNA: ENST00000361198.9

LDB1-201, Transcript of LIM domain binding 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDB1, Length 2,285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-201ENST00000361198 TIAM1Q13009 1591 aa33.93■■■■□ 3.02
LDB1-201ENST00000361198 MAP3K1Q13233 1512 aa33.93■■■■□ 3.02
LDB1-201ENST00000361198 MRC2Q9UBG0 1479 aa33.93■■■■□ 3.02
LDB1-201ENST00000361198 RRBP1Q9P2E9 1410 aaKnown RBP33.91■■■■□ 3.02
LDB1-201ENST00000361198 EFCAB5A4FU69 1503 aa33.91■■■■□ 3.02
LDB1-201ENST00000361198 FHOD3Q2V2M9 1422 aa33.9■■■■□ 3.02
LDB1-201ENST00000361198 PCF11O94913 1555 aaKnown RBP33.85■■■■□ 3.01
LDB1-201ENST00000361198 LRRC9Q6ZRR7 1453 aa33.8■■■■□ 3
LDB1-201ENST00000361198 CCNB3Q8WWL7 1395 aa33.78■■■■□ 3
LDB1-201ENST00000361198 AQRO60306 1485 aaKnown RBP eCLIP33.76■■■■□ 34e-7■■■■■ 29.4
LDB1-201ENST00000361198 PBRM1Q86U86 1689 aa33.76■■■□□ 2.99
LDB1-201ENST00000361198 CFAP43Q8NDM7 1665 aa33.74■■■□□ 2.99
LDB1-201ENST00000361198 ATP1B4Q9UN42 357 aaPredicted RBP33.73■■■□□ 2.99
LDB1-201ENST00000361198 FYCO1Q9BQS8 1478 aa33.73■■■□□ 2.99
LDB1-201ENST00000361198 CASKIN1Q8WXD9 1431 aa33.72■■■□□ 2.99
LDB1-201ENST00000361198 WDR62O43379 1518 aa33.69■■■□□ 2.98
LDB1-201ENST00000361198 SAMD9Q5K651 1589 aa33.69■■■□□ 2.98
LDB1-201ENST00000361198 FMN1Q68DA7 1419 aa33.67■■■□□ 2.98
LDB1-201ENST00000361198 IFT140Q96RY7 1462 aa33.64■■■□□ 2.97
LDB1-201ENST00000361198 PHLDB1Q86UU1 1377 aa33.62■■■□□ 2.97
LDB1-201ENST00000361198 ADAMTS12P58397 1594 aa33.61■■■□□ 2.97
LDB1-201ENST00000361198 GRIN2BQ13224 1484 aa33.61■■■□□ 2.97
LDB1-201ENST00000361198 SNAPC4Q5SXM2 1469 aa33.61■■■□□ 2.97
LDB1-201ENST00000361198 ZNF608Q9ULD9 1512 aaPredicted RBP33.6■■■□□ 2.97
LDB1-201ENST00000361198 ITGAEP38570 1179 aa33.56■■■□□ 2.96
LDB1-201ENST00000361198 DIEXFQ68CQ4 756 aaKnown RBP33.56■■■□□ 2.96
LDB1-201ENST00000361198 SCAF1Q9H7N4 1312 aaKnown RBP33.55■■■□□ 2.96
LDB1-201ENST00000361198 ERCC6Q03468 1493 aa33.55■■■□□ 2.96
LDB1-201ENST00000361198 DHX57Q6P158 1386 aaKnown RBP33.54■■■□□ 2.96
LDB1-201ENST00000361198 IQGAP2Q13576 1575 aa33.46■■■□□ 2.95
LDB1-201ENST00000361198 CLSPNQ9HAW4 1339 aa33.45■■■□□ 2.94
LDB1-201ENST00000361198 LRRIQ1Q96JM4 1722 aa33.44■■■□□ 2.94
LDB1-201ENST00000361198 THOC2Q8NI27 1593 aaKnown RBP33.43■■■□□ 2.94
LDB1-201ENST00000361198 FAM50AQ14320 339 aaKnown RBP33.4■■■□□ 2.94
LDB1-201ENST00000361198 EIF4G3O43432 1585 aaKnown RBP33.4■■■□□ 2.94
LDB1-201ENST00000361198 ZNF316A6NFI3 1004 aaPredicted RBP33.37■■■□□ 2.93
LDB1-201ENST00000361198 MTUS2Q5JR59 1369 aa33.35■■■□□ 2.93
LDB1-201ENST00000361198 RAB3GAP2Q9H2M9 1393 aa33.33■■■□□ 2.93
LDB1-201ENST00000361198 ACIN1Q9UKV3 1341 aaKnown RBP33.32■■■□□ 2.92
LDB1-201ENST00000361198 UGGT2Q9NYU1 1516 aa33.28■■■□□ 2.92
LDB1-201ENST00000361198 SETD5Q9C0A6 1442 aa33.26■■■□□ 2.92
LDB1-201ENST00000361198 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.26■■■□□ 2.918e-8■■□□□ 13.5
LDB1-201ENST00000361198 GRIN2AQ12879 1464 aa33.25■■■□□ 2.91
LDB1-201ENST00000361198 FGD6Q6ZV73 1430 aa33.25■■■□□ 2.91
LDB1-201ENST00000361198 KIAA0586Q9BVV6 1533 aa33.24■■■□□ 2.91
LDB1-201ENST00000361198 NEUROD1Q13562 356 aa33.21■■■□□ 2.91
LDB1-201ENST00000361198 NCOA2Q15596 1464 aa33.2■■■□□ 2.91
LDB1-201ENST00000361198 HECW1Q76N89 1606 aa33.2■■■□□ 2.91
LDB1-201ENST00000361198 CCDC18Q5T9S5 1454 aa33.2■■■□□ 2.91
LDB1-201ENST00000361198 EHBP1L1Q8N3D4 1523 aa33.2■■■□□ 2.9
LDB1-201ENST00000361198 MAGI1Q96QZ7 1491 aaPredicted RBP33.18■■■□□ 2.9
LDB1-201ENST00000361198 MAGI3Q5TCQ9 1506 aa33.17■■■□□ 2.9
LDB1-201ENST00000361198 SUPT6HQ7KZ85 1726 aaKnown RBP33.17■■■□□ 2.9
LDB1-201ENST00000361198 CENPBP07199 599 aaPredicted RBP33.14■■■□□ 2.9
LDB1-201ENST00000361198 DISP1Q96F81 1524 aa33.14■■■□□ 2.9
LDB1-201ENST00000361198 EPRSP07814 1512 aaKnown RBP33.13■■■□□ 2.89
LDB1-201ENST00000361198 MYOM3Q5VTT5 1437 aa33.12■■■□□ 2.89
LDB1-201ENST00000361198 KIAA0556O60303 1618 aa33.12■■■□□ 2.89
LDB1-201ENST00000361198 SYNJ2O15056 1496 aa33.1■■■□□ 2.89
LDB1-201ENST00000361198 CHMP7Q8WUX9 453 aaPredicted RBP33.1■■■□□ 2.89
LDB1-201ENST00000361198 MAPKBP1O60336 1514 aa33.09■■■□□ 2.89
LDB1-201ENST00000361198 ARHGEF11O15085 1522 aa33.08■■■□□ 2.89
LDB1-201ENST00000361198 CDK13Q14004 1512 aaKnown RBP33.06■■■□□ 2.88
LDB1-201ENST00000361198 CEP170Q5SW79 1584 aa33.04■■■□□ 2.88
LDB1-201ENST00000361198 FBLN2P98095 1184 aa33.02■■■□□ 2.88
LDB1-201ENST00000361198 PELP1Q8IZL8 1130 aaKnown RBP33.02■■■□□ 2.88
LDB1-201ENST00000361198 ARID3CA6NKF2 412 aa33.01■■■□□ 2.87
LDB1-201ENST00000361198 PTPRKQ15262 1439 aa33.01■■■□□ 2.87
LDB1-201ENST00000361198 PTPN23Q9H3S7 1636 aa32.97■■■□□ 2.87
LDB1-201ENST00000361198 NUP160Q12769 1436 aa32.92■■■□□ 2.86
LDB1-201ENST00000361198 NUP153P49790 1475 aaKnown RBP32.91■■■□□ 2.86
LDB1-201ENST00000361198 RAPGEF6Q8TEU7 1601 aa32.91■■■□□ 2.86
LDB1-201ENST00000361198 HFM1A2PYH4 1435 aa32.9■■■□□ 2.86
LDB1-201ENST00000361198 TCOF1Q13428 1488 aaKnown RBP32.87■■■□□ 2.85
LDB1-201ENST00000361198 GTF3C3Q9Y5Q9 886 aa32.85■■■□□ 2.85
LDB1-201ENST00000361198 JPH4Q96JJ6 628 aa32.84■■■□□ 2.85
LDB1-201ENST00000361198 NAIPQ13075 1403 aa32.82■■■□□ 2.84
LDB1-201ENST00000361198 MIER1Q8N108 512 aa32.81■■■□□ 2.84
LDB1-201ENST00000361198 SIN3AQ96ST3 1273 aa32.81■■■□□ 2.84
LDB1-201ENST00000361198 MIA2Q96PC5 1412 aa32.8■■■□□ 2.84
LDB1-201ENST00000361198 CARMIL2Q6F5E8 1435 aa32.78■■■□□ 2.84
LDB1-201ENST00000361198 PLB1Q6P1J6 1458 aa32.77■■■□□ 2.84
LDB1-201ENST00000361198 CDK11AQ9UQ88 783 aaPredicted RBP32.73■■■□□ 2.83
LDB1-201ENST00000361198 UACAQ9BZF9 1416 aa32.72■■■□□ 2.83
LDB1-201ENST00000361198 CHIC2Q9UKJ5 165 aa32.7■■■□□ 2.83
LDB1-201ENST00000361198 RRP7BPQ9NSQ0 103 aa32.68■■■□□ 2.82
LDB1-201ENST00000361198 PRG4Q92954 1404 aaPredicted RBP32.65■■■□□ 2.82
LDB1-201ENST00000361198 TIMELESSQ9UNS1 1208 aa32.63■■■□□ 2.81
LDB1-201ENST00000361198 TROQ12816 1431 aaPredicted RBP32.63■■■□□ 2.81
LDB1-201ENST00000361198 GCC2Q8IWJ2 1684 aa32.62■■■□□ 2.81
LDB1-201ENST00000361198 AKNAQ7Z591 1439 aa32.61■■■□□ 2.81
LDB1-201ENST00000361198 ZNF644Q9H582 1327 aaPredicted RBP32.56■■■□□ 2.8
LDB1-201ENST00000361198 YTHDC1Q96MU7 727 aaKnown RBP32.56■■■□□ 2.8
LDB1-201ENST00000361198 ABCA8O94911 1581 aa32.55■■■□□ 2.8
LDB1-201ENST00000361198 DAPK1P53355 1430 aa32.54■■■□□ 2.8
LDB1-201ENST00000361198 KDM6BO15054 1643 aa32.53■■■□□ 2.8
LDB1-201ENST00000361198 CHD1O14646 1710 aa32.52■■■□□ 2.8
LDB1-201ENST00000361198 DNMT1P26358 1616 aaKnown RBP32.51■■■□□ 2.79
LDB1-201ENST00000361198 KIF14Q15058 1648 aa32.51■■■□□ 2.79
LDB1-201ENST00000361198 ADCY10Q96PN6 1610 aa32.5■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms