RNA–Protein interactions for RNA: ENST00000361198.9

LDB1-201, Transcript of LIM domain binding 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDB1, Length 2,285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-201ENST00000361198 NISCHQ9Y2I1 1504 aa48.9■■■■■ 5.42
LDB1-201ENST00000361198 CCDC180Q9P1Z9 1646 aa42.05■■■■■ 4.32
LDB1-201ENST00000361198 ZCCHC6Q5VYS8 1495 aaKnown RBP41.24■■■■■ 4.19
LDB1-201ENST00000361198 SHROOM4Q9ULL8 1493 aa40.86■■■■■ 4.13
LDB1-201ENST00000361198 DCAF8L2P0C7V8 631 aa40.46■■■■■ 4.07
LDB1-201ENST00000361198 DCAF1Q9Y4B6 1507 aa40.26■■■■■ 4.04
LDB1-201ENST00000361198 SUPT5HO00267 1087 aaKnown RBP39.74■■■■□ 3.95
LDB1-201ENST00000361198 MYO15BQ96JP2 1530 aa39.42■■■■□ 3.9
LDB1-201ENST00000361198 ABCC9O60706 1549 aa39.33■■■■□ 3.89
LDB1-201ENST00000361198 SCRIBQ14160 1630 aa39.07■■■■□ 3.85
LDB1-201ENST00000361198 NACADO15069 1562 aa39.01■■■■□ 3.84
LDB1-201ENST00000361198 RB1CC1Q8TDY2 1594 aa38.5■■■■□ 3.75
LDB1-201ENST00000361198 CHIC1Q5VXU3 224 aa38.4■■■■□ 3.74
LDB1-201ENST00000361198 RSF1Q96T23 1441 aaPredicted RBP38.37■■■■□ 3.73
LDB1-201ENST00000361198 CECR2Q9BXF3 1484 aa38.1■■■■□ 3.69
LDB1-201ENST00000361198 MROH2BQ7Z745 1585 aa37.92■■■■□ 3.66
LDB1-201ENST00000361198 UNC13AQ9UPW8 1703 aa37.89■■■■□ 3.66
LDB1-201ENST00000361198 WIZO95785 1651 aa37.68■■■■□ 3.62
LDB1-201ENST00000361198 BAZ1AQ9NRL2 1556 aaPredicted RBP37.64■■■■□ 3.62
LDB1-201ENST00000361198 BICRAQ9NZM4 1560 aa37.45■■■■□ 3.59
LDB1-201ENST00000361198 SMARCA4P51532 1647 aa37.4■■■■□ 3.58
LDB1-201ENST00000361198 PABPN1Q86U42 306 aaKnown RBP eCLIP37.39■■■■□ 3.586e-6■■□□□ 12.8
LDB1-201ENST00000361198 TRIM41Q8WV44 630 aa37.17■■■■□ 3.54
LDB1-201ENST00000361198 TOP2AP11388 1531 aaKnown RBP37.15■■■■□ 3.54
LDB1-201ENST00000361198 LOC105371045A0A1W2PR82 267 aa37.12■■■■□ 3.53
LDB1-201ENST00000361198 EIF4G1Q04637 1599 aaKnown RBP36.93■■■■□ 3.5
LDB1-201ENST00000361198 CCDC88BA6NC98 1476 aa36.91■■■■□ 3.5
LDB1-201ENST00000361198 SMARCA2P51531 1590 aa36.9■■■■□ 3.5
LDB1-201ENST00000361198 PEG3Q9GZU2 1588 aa36.82■■■■□ 3.48
LDB1-201ENST00000361198 FAM9AQ8IZU1 332 aaPredicted RBP36.7■■■■□ 3.47
LDB1-201ENST00000361198 ATAD2BQ9ULI0 1458 aa36.6■■■■□ 3.45
LDB1-201ENST00000361198 HRCP23327 699 aa36.52■■■■□ 3.44
LDB1-201ENST00000361198 ABCC8Q09428 1581 aa36.51■■■■□ 3.44
LDB1-201ENST00000361198 BAZ1BQ9UIG0 1483 aaKnown RBP36.45■■■■□ 3.42
LDB1-201ENST00000361198 PCGF6Q9BYE7 350 aa36.35■■■■□ 3.41
LDB1-201ENST00000361198 EHMT2Q96KQ7 1210 aa36.29■■■■□ 3.4
LDB1-201ENST00000361198 NCAPD3P42695 1498 aa36.08■■■■□ 3.37
LDB1-201ENST00000361198 WRNQ14191 1432 aaPredicted RBP eCLIP36.06■■■■□ 3.36
LDB1-201ENST00000361198 HMGXB3Q12766 1538 aa36.04■■■■□ 3.36
LDB1-201ENST00000361198 SOGA1O94964 1423 aa36.02■■■■□ 3.36
LDB1-201ENST00000361198 TRIM26Q12899 539 aaPredicted RBP35.93■■■■□ 3.34
LDB1-201ENST00000361198 SYNJ1O43426 1573 aa35.91■■■■□ 3.34
LDB1-201ENST00000361198 RUSC2Q8N2Y8 1516 aa35.87■■■■□ 3.33
LDB1-201ENST00000361198 EEA1Q15075 1411 aa35.85■■■■□ 3.33
LDB1-201ENST00000361198 CSRNP3Q8WYN3 585 aa35.78■■■■□ 3.32
LDB1-201ENST00000361198 TOP2BQ02880 1626 aa35.6■■■■□ 3.29
LDB1-201ENST00000361198 TNIKQ9UKE5 1360 aa35.58■■■■□ 3.29
LDB1-201ENST00000361198 CFTRP13569 1480 aa35.55■■■■□ 3.28
LDB1-201ENST00000361198 PPARGC1BQ86YN6 1023 aaKnown RBP35.54■■■■□ 3.28
LDB1-201ENST00000361198 CEP162Q5TB80 1403 aa35.53■■■■□ 3.28
LDB1-201ENST00000361198 GOLGA3Q08378 1498 aa35.51■■■■□ 3.28
LDB1-201ENST00000361198 CC2D2AQ9P2K1 1620 aa35.51■■■■□ 3.27
LDB1-201ENST00000361198 BIVM-ERCC5R4GMW8 1640 aa35.5■■■■□ 3.27
LDB1-201ENST00000361198 UBTFP17480 764 aaKnown RBP35.48■■■■□ 3.27
LDB1-201ENST00000361198 CEP164Q9UPV0 1460 aa35.41■■■■□ 3.26
LDB1-201ENST00000361198 KIF21BO75037 1637 aa35.39■■■■□ 3.26
LDB1-201ENST00000361198 CUX1P39880 1505 aa35.37■■■■□ 3.25
LDB1-201ENST00000361198 PRDM2Q13029 1718 aa35.31■■■■□ 3.24
LDB1-201ENST00000361198 CADPSQ9ULU8 1353 aa35.28■■■■□ 3.24
LDB1-201ENST00000361198 RAPGEF2Q9Y4G8 1499 aa35.2■■■■□ 3.23
LDB1-201ENST00000361198 ZEB1P37275 1124 aaPredicted RBP35.13■■■■□ 3.21
LDB1-201ENST00000361198 CLIP1P30622 1438 aa35.04■■■■□ 3.2
LDB1-201ENST00000361198 KIF27Q86VH2 1401 aa35.03■■■■□ 3.2
LDB1-201ENST00000361198 PRXQ9BXM0 1461 aa35.03■■■■□ 3.2
LDB1-201ENST00000361198 ERICH3Q5RHP9 1530 aa34.97■■■■□ 3.19
LDB1-201ENST00000361198 TTBK1Q5TCY1 1321 aaPredicted RBP34.94■■■■□ 3.18
LDB1-201ENST00000361198 FANCD2Q9BXW9 1451 aa34.91■■■■□ 3.18
LDB1-201ENST00000361198 FGD5Q6ZNL6 1462 aa34.84■■■■□ 3.17
LDB1-201ENST00000361198 NESP48681 1621 aa34.84■■■■□ 3.17
LDB1-201ENST00000361198 RANGAP1P46060 587 aaPredicted RBP34.83■■■■□ 3.17
LDB1-201ENST00000361198 VPS8Q8N3P4 1428 aa34.82■■■■□ 3.16
LDB1-201ENST00000361198 CUX2O14529 1486 aa34.81■■■■□ 3.16
LDB1-201ENST00000361198 IGF1RP08069 1367 aa34.7■■■■□ 3.15
LDB1-201ENST00000361198 DNMBPQ6XZF7 1577 aa34.68■■■■□ 3.14
LDB1-201ENST00000361198 LAMC3Q9Y6N6 1575 aa34.66■■■■□ 3.14
LDB1-201ENST00000361198 DNAJC5BQ9UF47 199 aa34.66■■■■□ 3.14
LDB1-201ENST00000361198 TOPBP1Q92547 1522 aa34.62■■■■□ 3.13
LDB1-201ENST00000361198 ARAP1Q96P48 1450 aa34.58■■■■□ 3.13
LDB1-201ENST00000361198 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.56■■■■□ 3.12
LDB1-201ENST00000361198 POLA1P09884 1462 aaPredicted RBP34.55■■■■□ 3.12
LDB1-201ENST00000361198 APLP2Q06481 763 aa34.54■■■■□ 3.12
LDB1-201ENST00000361198 RAD54L2Q9Y4B4 1467 aa34.54■■■■□ 3.12
LDB1-201ENST00000361198 CARMIL1Q5VZK9 1371 aa34.53■■■■□ 3.12
LDB1-201ENST00000361198 ABCA10Q8WWZ4 1543 aa34.48■■■■□ 3.11
LDB1-201ENST00000361198 URB2Q14146 1524 aaKnown RBP34.45■■■■□ 3.11
LDB1-201ENST00000361198 CCER1Q8TC90 406 aaPredicted RBP34.43■■■■□ 3.1
LDB1-201ENST00000361198 ARHGAP35Q9NRY4 1499 aa34.42■■■■□ 3.1
LDB1-201ENST00000361198 PDS5BQ9NTI5 1447 aa34.42■■■■□ 3.1
LDB1-201ENST00000361198 KIF21AQ7Z4S6 1674 aa34.31■■■■□ 3.08
LDB1-201ENST00000361198 WDR97A6NE52 1622 aa34.25■■■■□ 3.07
LDB1-201ENST00000361198 KANK4Q5T7N3 995 aaPredicted RBP34.22■■■■□ 3.07
LDB1-201ENST00000361198 HNRNPUL2Q1KMD3 747 aaKnown RBP34.19■■■■□ 3.06
LDB1-201ENST00000361198 CUL7Q14999 1698 aa34.19■■■■□ 3.06
LDB1-201ENST00000361198 TDRD9Q8NDG6 1382 aaKnown RBP34.14■■■■□ 3.06
LDB1-201ENST00000361198 ABCA5Q8WWZ7 1642 aa34.12■■■■□ 3.05
LDB1-201ENST00000361198 GAPVD1Q14C86 1478 aa34.06■■■■□ 3.04
LDB1-201ENST00000361198 TARBP1Q13395 1621 aaKnown RBP34■■■■□ 3.03
LDB1-201ENST00000361198 CTTNBP2Q8WZ74 1663 aa33.99■■■■□ 3.03
LDB1-201ENST00000361198 P3H3Q8IVL6 736 aa33.97■■■■□ 3.03
LDB1-201ENST00000361198 FHAD1B1AJZ9 1412 aa33.94■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms