RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 CTTNBP2Q8WZ74 1663 aa31.83■■■□□ 2.69
CLN3-205ENST00000359984 CLIP1P30622 1438 aa31.81■■■□□ 2.68
CLN3-205ENST00000359984 CHD1O14646 1710 aa31.77■■■□□ 2.68
CLN3-205ENST00000359984 NUP160Q12769 1436 aa31.77■■■□□ 2.68
CLN3-205ENST00000359984 CEP170Q5SW79 1584 aa31.76■■■□□ 2.68
CLN3-205ENST00000359984 KIAA0586Q9BVV6 1533 aa31.73■■■□□ 2.67
CLN3-205ENST00000359984 IQGAP2Q13576 1575 aa31.69■■■□□ 2.66
CLN3-205ENST00000359984 ARHGAP35Q9NRY4 1499 aa31.65■■■□□ 2.66
CLN3-205ENST00000359984 ARAP1Q96P48 1450 aa31.56■■■□□ 2.64
CLN3-205ENST00000359984 EFCAB5A4FU69 1503 aa31.56■■■□□ 2.64
CLN3-205ENST00000359984 UGGT2Q9NYU1 1516 aa31.55■■■□□ 2.64
CLN3-205ENST00000359984 P3H3Q8IVL6 736 aa31.53■■■□□ 2.64
CLN3-205ENST00000359984 SAMD9Q5K651 1589 aa31.52■■■□□ 2.64
CLN3-205ENST00000359984 JPH4Q96JJ6 628 aa31.52■■■□□ 2.64
CLN3-205ENST00000359984 FHOD3Q2V2M9 1422 aa31.46■■■□□ 2.63
CLN3-205ENST00000359984 CLASP1Q7Z460 1538 aa31.45■■■□□ 2.63
CLN3-205ENST00000359984 VPS8Q8N3P4 1428 aa31.45■■■□□ 2.63
CLN3-205ENST00000359984 DISP1Q96F81 1524 aa31.43■■■□□ 2.62
CLN3-205ENST00000359984 OSCARQ8IYS5 282 aa31.41■■■□□ 2.62
CLN3-205ENST00000359984 KIAA0556O60303 1618 aa31.37■■■□□ 2.61
CLN3-205ENST00000359984 SHROOM2Q13796 1616 aa31.36■■■□□ 2.61
CLN3-205ENST00000359984 CARMIL2Q6F5E8 1435 aa31.34■■■□□ 2.61
CLN3-205ENST00000359984 PRG4Q92954 1404 aaPredicted RBP31.34■■■□□ 2.61
CLN3-205ENST00000359984 FMN1Q68DA7 1419 aa31.29■■■□□ 2.6
CLN3-205ENST00000359984 ERCC6L2Q5T890 1561 aa31.2■■■□□ 2.59
CLN3-205ENST00000359984 TTBK1Q5TCY1 1321 aaPredicted RBP31.2■■■□□ 2.58
CLN3-205ENST00000359984 PCF11O94913 1555 aaKnown RBP31.18■■■□□ 2.58
CLN3-205ENST00000359984 CASKIN1Q8WXD9 1431 aa31.18■■■□□ 2.58
CLN3-205ENST00000359984 FYCO1Q9BQS8 1478 aa31.14■■■□□ 2.57
CLN3-205ENST00000359984 ATP1B4Q9UN42 357 aaPredicted RBP31.12■■■□□ 2.57
CLN3-205ENST00000359984 APLP2Q06481 763 aa31.11■■■□□ 2.57
CLN3-205ENST00000359984 PTPRGP23470 1445 aa31.1■■■□□ 2.57
CLN3-205ENST00000359984 PPARGC1BQ86YN6 1023 aaKnown RBP31.08■■■□□ 2.57
CLN3-205ENST00000359984 PLB1Q6P1J6 1458 aa31.03■■■□□ 2.56
CLN3-205ENST00000359984 RAPGEF6Q8TEU7 1601 aa31■■■□□ 2.55
CLN3-205ENST00000359984 HECW1Q76N89 1606 aa30.99■■■□□ 2.55
CLN3-205ENST00000359984 MAP3K1Q13233 1512 aa30.98■■■□□ 2.55
CLN3-205ENST00000359984 ABCA8O94911 1581 aa30.98■■■□□ 2.55
CLN3-205ENST00000359984 TIAM1Q13009 1591 aa30.96■■■□□ 2.55
CLN3-205ENST00000359984 NUP153P49790 1475 aaKnown RBP30.95■■■□□ 2.54
CLN3-205ENST00000359984 KANK4Q5T7N3 995 aaPredicted RBP30.94■■■□□ 2.54
CLN3-205ENST00000359984 LRRIQ1Q96JM4 1722 aa30.94■■■□□ 2.54
CLN3-205ENST00000359984 EPRSP07814 1512 aaKnown RBP30.92■■■□□ 2.54
CLN3-205ENST00000359984 UACAQ9BZF9 1416 aa30.91■■■□□ 2.54
CLN3-205ENST00000359984 CFAP43Q8NDM7 1665 aa30.9■■■□□ 2.54
CLN3-205ENST00000359984 ARID3CA6NKF2 412 aa30.89■■■□□ 2.54
CLN3-205ENST00000359984 CCDC18Q5T9S5 1454 aa30.89■■■□□ 2.54
CLN3-205ENST00000359984 ARHGEF11O15085 1522 aa30.87■■■□□ 2.53
CLN3-205ENST00000359984 CDK13Q14004 1512 aaKnown RBP30.86■■■□□ 2.53
CLN3-205ENST00000359984 LRRC9Q6ZRR7 1453 aa30.84■■■□□ 2.53
CLN3-205ENST00000359984 ABCC2Q92887 1545 aa30.81■■■□□ 2.52
CLN3-205ENST00000359984 UHRF1BP1LA0JNW5 1464 aa30.78■■■□□ 2.52
CLN3-205ENST00000359984 ATP10BO94823 1461 aa30.78■■■□□ 2.52
CLN3-205ENST00000359984 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.76■■■□□ 2.52
CLN3-205ENST00000359984 HNRNPUL2Q1KMD3 747 aaKnown RBP30.76■■■□□ 2.52
CLN3-205ENST00000359984 MTUS2Q5JR59 1369 aa30.75■■■□□ 2.51
CLN3-205ENST00000359984 RIMBP3CA6NJZ7 1639 aa30.74■■■□□ 2.51
CLN3-205ENST00000359984 RIMBP3BA6NNM3 1639 aa30.74■■■□□ 2.51
CLN3-205ENST00000359984 RIMBP3Q9UFD9 1639 aa30.74■■■□□ 2.51
CLN3-205ENST00000359984 MAGI3Q5TCQ9 1506 aa30.73■■■□□ 2.51
CLN3-205ENST00000359984 ADCY10Q96PN6 1610 aa30.69■■■□□ 2.5
CLN3-205ENST00000359984 CDK11AQ9UQ88 783 aaPredicted RBP30.69■■■□□ 2.5
CLN3-205ENST00000359984 EHBP1L1Q8N3D4 1523 aa30.67■■■□□ 2.5
CLN3-205ENST00000359984 TRIM26Q12899 539 aaPredicted RBP30.65■■■□□ 2.5
CLN3-205ENST00000359984 KDM5BQ9UGL1 1544 aa30.65■■■□□ 2.5
CLN3-205ENST00000359984 PLEKHD1A6NEE1 506 aa30.61■■■□□ 2.49
CLN3-205ENST00000359984 CYB5RLQ6IPT4 315 aa30.61■■■□□ 2.49
CLN3-205ENST00000359984 TROQ12816 1431 aaPredicted RBP30.6■■■□□ 2.49
CLN3-205ENST00000359984 ZCCHC11Q5TAX3 1644 aaKnown RBP30.59■■■□□ 2.49
CLN3-205ENST00000359984 NCOA2Q15596 1464 aa30.55■■■□□ 2.48
CLN3-205ENST00000359984 PHLDB1Q86UU1 1377 aa30.55■■■□□ 2.48
CLN3-205ENST00000359984 SUPT6HQ7KZ85 1726 aaKnown RBP30.55■■■□□ 2.48
CLN3-205ENST00000359984 PCGF6Q9BYE7 350 aa30.5■■■□□ 2.47
CLN3-205ENST00000359984 NPM1P06748 294 aaKnown RBP eCLIP30.48■■■□□ 2.47
CLN3-205ENST00000359984 KIF14Q15058 1648 aa30.45■■■□□ 2.46
CLN3-205ENST00000359984 RRBP1Q9P2E9 1410 aaKnown RBP30.43■■■□□ 2.46
CLN3-205ENST00000359984 MYOM3Q5VTT5 1437 aa30.4■■■□□ 2.46
CLN3-205ENST00000359984 ASXL2Q76L83 1435 aa30.38■■■□□ 2.45
CLN3-205ENST00000359984 CCNB3Q8WWL7 1395 aa30.37■■■□□ 2.45
CLN3-205ENST00000359984 WDR7Q9Y4E6 1490 aa30.37■■■□□ 2.45
CLN3-205ENST00000359984 KCNH8Q96L42 1107 aa30.37■■■□□ 2.45
CLN3-205ENST00000359984 ABCC10Q5T3U5 1492 aa30.36■■■□□ 2.45
CLN3-205ENST00000359984 FGD6Q6ZV73 1430 aa30.35■■■□□ 2.45
CLN3-205ENST00000359984 DNAJC5Q9H3Z4 198 aa30.31■■■□□ 2.44
CLN3-205ENST00000359984 GPATCH8Q9UKJ3 1502 aaKnown RBP30.3■■■□□ 2.44
CLN3-205ENST00000359984 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.29■■■□□ 2.44
CLN3-205ENST00000359984 MIA2Q96PC5 1412 aa30.28■■■□□ 2.44
CLN3-205ENST00000359984 FAM50AQ14320 339 aaKnown RBP30.26■■■□□ 2.43
CLN3-205ENST00000359984 TTC37Q6PGP7 1564 aa30.24■■■□□ 2.43
CLN3-205ENST00000359984 MAPKBP1O60336 1514 aa30.24■■■□□ 2.43
CLN3-205ENST00000359984 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.22■■■□□ 2.43
CLN3-205ENST00000359984 CFDP1Q9UEE9 299 aaPredicted RBP30.22■■■□□ 2.43
CLN3-205ENST00000359984 ITSN2Q9NZM3 1697 aa30.22■■■□□ 2.43
CLN3-205ENST00000359984 CDC42BPAQ5VT25 1732 aa30.22■■■□□ 2.43
CLN3-205ENST00000359984 PTPN23Q9H3S7 1636 aa30.21■■■□□ 2.43
CLN3-205ENST00000359984 TCOF1Q13428 1488 aaKnown RBP30.19■■■□□ 2.42
CLN3-205ENST00000359984 ZNF644Q9H582 1327 aaPredicted RBP30.15■■■□□ 2.42
CLN3-205ENST00000359984 PREX2Q70Z35 1606 aa30.14■■■□□ 2.42
CLN3-205ENST00000359984 ABCA9Q8IUA7 1624 aa30.14■■■□□ 2.42
CLN3-205ENST00000359984 ITGAEP38570 1179 aa30.12■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms