RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 IFT140Q96RY7 1462 aa23.67■■□□□ 1.38
HMGA1-202ENST00000347617 TDRD9Q8NDG6 1382 aaKnown RBP23.65■■□□□ 1.38
HMGA1-202ENST00000347617 VPS8Q8N3P4 1428 aa23.64■■□□□ 1.37
HMGA1-202ENST00000347617 THOC2Q8NI27 1593 aaKnown RBP23.61■■□□□ 1.37
HMGA1-202ENST00000347617 CLSPNQ9HAW4 1339 aa23.51■■□□□ 1.35
HMGA1-202ENST00000347617 GRIN2BQ13224 1484 aa23.51■■□□□ 1.35
HMGA1-202ENST00000347617 ARAP1Q96P48 1450 aa23.51■■□□□ 1.35
HMGA1-202ENST00000347617 ARHGAP35Q9NRY4 1499 aa23.5■■□□□ 1.35
HMGA1-202ENST00000347617 FHAD1B1AJZ9 1412 aa23.49■■□□□ 1.35
HMGA1-202ENST00000347617 PBRM1Q86U86 1689 aa23.49■■□□□ 1.35
HMGA1-202ENST00000347617 AQRO60306 1485 aaKnown RBP eCLIP23.47■■□□□ 1.352e-7■■■■■ 51.4
HMGA1-202ENST00000347617 CTTNBP2Q8WZ74 1663 aa23.43■■□□□ 1.34
HMGA1-202ENST00000347617 RANGAP1P46060 587 aaPredicted RBP23.41■■□□□ 1.34
HMGA1-202ENST00000347617 APLP2Q06481 763 aa23.41■■□□□ 1.34
HMGA1-202ENST00000347617 EFCAB5A4FU69 1503 aa23.41■■□□□ 1.34
HMGA1-202ENST00000347617 ZNF608Q9ULD9 1512 aaPredicted RBP23.41■■□□□ 1.34
HMGA1-202ENST00000347617 ADAMTS12P58397 1594 aa23.4■■□□□ 1.34
HMGA1-202ENST00000347617 EIF4G3O43432 1585 aaKnown RBP23.35■■□□□ 1.33
HMGA1-202ENST00000347617 MAGI1Q96QZ7 1491 aaPredicted RBP23.32■■□□□ 1.32
HMGA1-202ENST00000347617 MAP3K1Q13233 1512 aa23.3■■□□□ 1.32
HMGA1-202ENST00000347617 MIER1Q8N108 512 aa23.27■■□□□ 1.32
HMGA1-202ENST00000347617 SNAPC4Q5SXM2 1469 aa23.26■■□□□ 1.31
HMGA1-202ENST00000347617 SAMD9Q5K651 1589 aa23.25■■□□□ 1.31
HMGA1-202ENST00000347617 YTHDC1Q96MU7 727 aaKnown RBP23.22■■□□□ 1.31
HMGA1-202ENST00000347617 FMN1Q68DA7 1419 aa23.21■■□□□ 1.31
HMGA1-202ENST00000347617 SYNJ2O15056 1496 aa23.2■■□□□ 1.31
HMGA1-202ENST00000347617 GRIN2AQ12879 1464 aa23.2■■□□□ 1.31
HMGA1-202ENST00000347617 IQGAP2Q13576 1575 aa23.2■■□□□ 1.3
HMGA1-202ENST00000347617 KIAA0586Q9BVV6 1533 aa23.19■■□□□ 1.3
HMGA1-202ENST00000347617 CASKIN1Q8WXD9 1431 aa23.16■■□□□ 1.3
HMGA1-202ENST00000347617 FHOD3Q2V2M9 1422 aa23.16■■□□□ 1.3
HMGA1-202ENST00000347617 TTBK1Q5TCY1 1321 aaPredicted RBP23.16■■□□□ 1.3
HMGA1-202ENST00000347617 FYCO1Q9BQS8 1478 aa23.15■■□□□ 1.3
HMGA1-202ENST00000347617 UGGT2Q9NYU1 1516 aa23.15■■□□□ 1.3
HMGA1-202ENST00000347617 TIAM1Q13009 1591 aa23.12■■□□□ 1.29
HMGA1-202ENST00000347617 P3H3Q8IVL6 736 aa23.11■■□□□ 1.29
HMGA1-202ENST00000347617 CHMP7Q8WUX9 453 aaPredicted RBP23.11■■□□□ 1.29
HMGA1-202ENST00000347617 KANK4Q5T7N3 995 aaPredicted RBP23.09■■□□□ 1.29
HMGA1-202ENST00000347617 PCF11O94913 1555 aaKnown RBP23.08■■□□□ 1.29
HMGA1-202ENST00000347617 NUP160Q12769 1436 aa23.07■■□□□ 1.28
HMGA1-202ENST00000347617 CFAP43Q8NDM7 1665 aa23.04■■□□□ 1.28
HMGA1-202ENST00000347617 LRRC9Q6ZRR7 1453 aa23.03■■□□□ 1.28
HMGA1-202ENST00000347617 HNRNPUL2Q1KMD3 747 aaKnown RBP23.02■■□□□ 1.28
HMGA1-202ENST00000347617 CEP170Q5SW79 1584 aa23■■□□□ 1.27
HMGA1-202ENST00000347617 RRBP1Q9P2E9 1410 aaKnown RBP22.99■■□□□ 1.27
HMGA1-202ENST00000347617 DISP1Q96F81 1524 aa22.97■■□□□ 1.27
HMGA1-202ENST00000347617 KIAA0556O60303 1618 aa22.94■■□□□ 1.26
HMGA1-202ENST00000347617 FBLN2P98095 1184 aa22.92■■□□□ 1.26
HMGA1-202ENST00000347617 SUPT16HQ9Y5B9 1047 aaKnown RBP22.92■■□□□ 1.26
HMGA1-202ENST00000347617 CCDC18Q5T9S5 1454 aa22.92■■□□□ 1.26
HMGA1-202ENST00000347617 DHX57Q6P158 1386 aaKnown RBP22.89■■□□□ 1.26
HMGA1-202ENST00000347617 JPH4Q96JJ6 628 aa22.89■■□□□ 1.26
HMGA1-202ENST00000347617 CARMIL2Q6F5E8 1435 aa22.89■■□□□ 1.25
HMGA1-202ENST00000347617 ATP1B4Q9UN42 357 aaPredicted RBP22.89■■□□□ 1.25
HMGA1-202ENST00000347617 HECW1Q76N89 1606 aa22.88■■□□□ 1.25
HMGA1-202ENST00000347617 CCNB3Q8WWL7 1395 aa22.87■■□□□ 1.25
HMGA1-202ENST00000347617 LRRIQ1Q96JM4 1722 aa22.82■■□□□ 1.24
HMGA1-202ENST00000347617 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.81■■□□□ 1.244e-21■□□□□ 9.5
HMGA1-202ENST00000347617 MTUS2Q5JR59 1369 aa22.8■■□□□ 1.24
HMGA1-202ENST00000347617 EPRSP07814 1512 aaKnown RBP22.8■■□□□ 1.24
HMGA1-202ENST00000347617 PHLDB1Q86UU1 1377 aa22.79■■□□□ 1.24
HMGA1-202ENST00000347617 EHBP1L1Q8N3D4 1523 aa22.79■■□□□ 1.24
HMGA1-202ENST00000347617 CHD1O14646 1710 aa22.78■■□□□ 1.24
HMGA1-202ENST00000347617 ANP32EQ9BTT0 268 aa22.77■■□□□ 1.24
HMGA1-202ENST00000347617 RAPGEF6Q8TEU7 1601 aa22.75■■□□□ 1.23
HMGA1-202ENST00000347617 TSHZ2Q9NRE2 1034 aa22.73■■□□□ 1.23
HMGA1-202ENST00000347617 SUPT6HQ7KZ85 1726 aaKnown RBP22.72■■□□□ 1.23
HMGA1-202ENST00000347617 SHROOM2Q13796 1616 aa22.71■■□□□ 1.23
HMGA1-202ENST00000347617 ARHGEF11O15085 1522 aa22.71■■□□□ 1.23
HMGA1-202ENST00000347617 NUP153P49790 1475 aaKnown RBP22.7■■□□□ 1.22
HMGA1-202ENST00000347617 NCOA2Q15596 1464 aa22.68■■□□□ 1.22
HMGA1-202ENST00000347617 CDK11AQ9UQ88 783 aaPredicted RBP22.68■■□□□ 1.22
HMGA1-202ENST00000347617 PRG4Q92954 1404 aaPredicted RBP22.67■■□□□ 1.22
HMGA1-202ENST00000347617 MAGI3Q5TCQ9 1506 aa22.66■■□□□ 1.22
HMGA1-202ENST00000347617 FGD6Q6ZV73 1430 aa22.66■■□□□ 1.22
HMGA1-202ENST00000347617 MYOM3Q5VTT5 1437 aa22.64■■□□□ 1.22
HMGA1-202ENST00000347617 ABCA8O94911 1581 aa22.64■■□□□ 1.21
HMGA1-202ENST00000347617 CDK13Q14004 1512 aaKnown RBP22.63■■□□□ 1.21
HMGA1-202ENST00000347617 CLASP1Q7Z460 1538 aa22.61■■□□□ 1.21
HMGA1-202ENST00000347617 PLB1Q6P1J6 1458 aa22.61■■□□□ 1.21
HMGA1-202ENST00000347617 PTPRGP23470 1445 aa22.6■■□□□ 1.21
HMGA1-202ENST00000347617 MIA2Q96PC5 1412 aa22.58■■□□□ 1.2
HMGA1-202ENST00000347617 FAM50AQ14320 339 aaKnown RBP22.55■■□□□ 1.2
HMGA1-202ENST00000347617 TROQ12816 1431 aaPredicted RBP22.55■■□□□ 1.2
HMGA1-202ENST00000347617 TCOF1Q13428 1488 aaKnown RBP22.54■■□□□ 1.2
HMGA1-202ENST00000347617 ATP10BO94823 1461 aa22.5■■□□□ 1.19
HMGA1-202ENST00000347617 SETD5Q9C0A6 1442 aa22.49■■□□□ 1.19
HMGA1-202ENST00000347617 PTPN23Q9H3S7 1636 aa22.49■■□□□ 1.19
HMGA1-202ENST00000347617 ADCY10Q96PN6 1610 aa22.48■■□□□ 1.19
HMGA1-202ENST00000347617 UACAQ9BZF9 1416 aa22.48■■□□□ 1.19
HMGA1-202ENST00000347617 PLEKHD1A6NEE1 506 aa22.45■■□□□ 1.19
HMGA1-202ENST00000347617 ITGAEP38570 1179 aa22.45■■□□□ 1.19
HMGA1-202ENST00000347617 TIMELESSQ9UNS1 1208 aa22.45■■□□□ 1.19
HMGA1-202ENST00000347617 MAPKBP1O60336 1514 aa22.44■■□□□ 1.18
HMGA1-202ENST00000347617 ARID3CA6NKF2 412 aa22.43■■□□□ 1.18
HMGA1-202ENST00000347617 RAB3GAP2Q9H2M9 1393 aa22.42■■□□□ 1.18
HMGA1-202ENST00000347617 UHRF1BP1LA0JNW5 1464 aa22.4■■□□□ 1.18
HMGA1-202ENST00000347617 NEFLP07196 543 aa22.4■■□□□ 1.18
HMGA1-202ENST00000347617 ABCC2Q92887 1545 aa22.39■■□□□ 1.18
HMGA1-202ENST00000347617 ERCC6L2Q5T890 1561 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms