RNA–Protein interactions for RNA: ENST00000340157.8

VRK2-201, Transcript of vaccinia related kinase 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK2, Length 1,888 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK2-201ENST00000340157 MAGI1Q96QZ7 1491 aaPredicted RBP33.29■■■□□ 2.92
VRK2-201ENST00000340157 PPARGC1BQ86YN6 1023 aaKnown RBP33.27■■■□□ 2.92
VRK2-201ENST00000340157 PCGF6Q9BYE7 350 aa33.22■■■□□ 2.91
VRK2-201ENST00000340157 GRIN2AQ12879 1464 aa33.2■■■□□ 2.91
VRK2-201ENST00000340157 EFCAB5A4FU69 1503 aa33.2■■■□□ 2.9
VRK2-201ENST00000340157 TRIM26Q12899 539 aaPredicted RBP33.19■■■□□ 2.9
VRK2-201ENST00000340157 SYNJ2O15056 1496 aa33.17■■■□□ 2.9
VRK2-201ENST00000340157 SAMD9Q5K651 1589 aa33.14■■■□□ 2.9
VRK2-201ENST00000340157 IQGAP2Q13576 1575 aa33.13■■■□□ 2.89
VRK2-201ENST00000340157 FHOD3Q2V2M9 1422 aa33.08■■■□□ 2.89
VRK2-201ENST00000340157 P3H3Q8IVL6 736 aa33.05■■■□□ 2.88
VRK2-201ENST00000340157 CEP170Q5SW79 1584 aa33.05■■■□□ 2.88
VRK2-201ENST00000340157 CHMP7Q8WUX9 453 aaPredicted RBP33.02■■■□□ 2.88
VRK2-201ENST00000340157 KIAA0586Q9BVV6 1533 aa33.01■■■□□ 2.88
VRK2-201ENST00000340157 TTBK1Q5TCY1 1321 aaPredicted RBP32.98■■■□□ 2.87
VRK2-201ENST00000340157 UGGT2Q9NYU1 1516 aa32.96■■■□□ 2.87
VRK2-201ENST00000340157 PCF11O94913 1555 aaKnown RBP32.96■■■□□ 2.87
VRK2-201ENST00000340157 NUP160Q12769 1436 aa32.96■■■□□ 2.87
VRK2-201ENST00000340157 FBLN2P98095 1184 aa32.94■■■□□ 2.86
VRK2-201ENST00000340157 CHD1O14646 1710 aa32.92■■■□□ 2.86
VRK2-201ENST00000340157 APLP2Q06481 763 aa32.91■■■□□ 2.86
VRK2-201ENST00000340157 FMN1Q68DA7 1419 aa32.85■■■□□ 2.85
VRK2-201ENST00000340157 FYCO1Q9BQS8 1478 aa32.83■■■□□ 2.85
VRK2-201ENST00000340157 DISP1Q96F81 1524 aa32.83■■■□□ 2.85
VRK2-201ENST00000340157 CASKIN1Q8WXD9 1431 aa32.83■■■□□ 2.85
VRK2-201ENST00000340157 TIAM1Q13009 1591 aa32.82■■■□□ 2.84
VRK2-201ENST00000340157 MAP3K1Q13233 1512 aa32.82■■■□□ 2.84
VRK2-201ENST00000340157 KIAA0556O60303 1618 aa32.81■■■□□ 2.84
VRK2-201ENST00000340157 KANK4Q5T7N3 995 aaPredicted RBP32.8■■■□□ 2.84
VRK2-201ENST00000340157 CFAP43Q8NDM7 1665 aa32.79■■■□□ 2.84
VRK2-201ENST00000340157 LRRIQ1Q96JM4 1722 aa32.75■■■□□ 2.83
VRK2-201ENST00000340157 JPH4Q96JJ6 628 aa32.65■■■□□ 2.82
VRK2-201ENST00000340157 LRRC9Q6ZRR7 1453 aa32.65■■■□□ 2.82
VRK2-201ENST00000340157 ATP1B4Q9UN42 357 aaPredicted RBP32.63■■■□□ 2.81
VRK2-201ENST00000340157 HECW1Q76N89 1606 aa32.57■■■□□ 2.8
VRK2-201ENST00000340157 SHROOM2Q13796 1616 aa32.56■■■□□ 2.8
VRK2-201ENST00000340157 CARMIL2Q6F5E8 1435 aa32.54■■■□□ 2.8
VRK2-201ENST00000340157 CLASP1Q7Z460 1538 aa32.5■■■□□ 2.79
VRK2-201ENST00000340157 RAPGEF6Q8TEU7 1601 aa32.49■■■□□ 2.79
VRK2-201ENST00000340157 PRG4Q92954 1404 aaPredicted RBP32.47■■■□□ 2.79
VRK2-201ENST00000340157 CCDC18Q5T9S5 1454 aa32.46■■■□□ 2.79
VRK2-201ENST00000340157 EPRSP07814 1512 aaKnown RBP32.46■■■□□ 2.79
VRK2-201ENST00000340157 RRBP1Q9P2E9 1410 aaKnown RBP32.42■■■□□ 2.78
VRK2-201ENST00000340157 CDK13Q14004 1512 aaKnown RBP32.42■■■□□ 2.78
VRK2-201ENST00000340157 NUP153P49790 1475 aaKnown RBP32.42■■■□□ 2.78
VRK2-201ENST00000340157 MAGI3Q5TCQ9 1506 aa32.41■■■□□ 2.78
VRK2-201ENST00000340157 PLB1Q6P1J6 1458 aa32.39■■■□□ 2.78
VRK2-201ENST00000340157 PHLDB1Q86UU1 1377 aa32.37■■■□□ 2.77
VRK2-201ENST00000340157 ERCC6L2Q5T890 1561 aa32.37■■■□□ 2.77
VRK2-201ENST00000340157 EHBP1L1Q8N3D4 1523 aa32.35■■■□□ 2.77
VRK2-201ENST00000340157 MTUS2Q5JR59 1369 aa32.34■■■□□ 2.77
VRK2-201ENST00000340157 ABCA8O94911 1581 aa32.34■■■□□ 2.77
VRK2-201ENST00000340157 ARID3CA6NKF2 412 aa32.29■■■□□ 2.76
VRK2-201ENST00000340157 CCNB3Q8WWL7 1395 aa32.28■■■□□ 2.76
VRK2-201ENST00000340157 SUPT6HQ7KZ85 1726 aaKnown RBP32.28■■■□□ 2.76
VRK2-201ENST00000340157 HRCP23327 699 aa32.26■■■□□ 2.75
VRK2-201ENST00000340157 PTPRGP23470 1445 aa32.24■■■□□ 2.75
VRK2-201ENST00000340157 ARHGEF11O15085 1522 aa32.24■■■□□ 2.75
VRK2-201ENST00000340157 NCOA2Q15596 1464 aa32.23■■■□□ 2.75
VRK2-201ENST00000340157 HNRNPUL2Q1KMD3 747 aaKnown RBP32.22■■■□□ 2.75
VRK2-201ENST00000340157 FGD6Q6ZV73 1430 aa32.11■■■□□ 2.73
VRK2-201ENST00000340157 ATP10BO94823 1461 aa32.11■■■□□ 2.73
VRK2-201ENST00000340157 MYOM3Q5VTT5 1437 aa32.09■■■□□ 2.73
VRK2-201ENST00000340157 UACAQ9BZF9 1416 aa32.08■■■□□ 2.73
VRK2-201ENST00000340157 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.05■■■□□ 2.72
VRK2-201ENST00000340157 TROQ12816 1431 aaPredicted RBP32.05■■■□□ 2.72
VRK2-201ENST00000340157 OSCARQ8IYS5 282 aa32.04■■■□□ 2.72
VRK2-201ENST00000340157 ADCY10Q96PN6 1610 aa32.02■■■□□ 2.72
VRK2-201ENST00000340157 ABCC2Q92887 1545 aa32.02■■■□□ 2.72
VRK2-201ENST00000340157 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.02■■■□□ 2.72
VRK2-201ENST00000340157 CDK11AQ9UQ88 783 aaPredicted RBP32.01■■■□□ 2.72
VRK2-201ENST00000340157 KIF14Q15058 1648 aa32■■■□□ 2.71
VRK2-201ENST00000340157 FAM50AQ14320 339 aaKnown RBP31.99■■■□□ 2.71
VRK2-201ENST00000340157 PTPN23Q9H3S7 1636 aa31.98■■■□□ 2.71
VRK2-201ENST00000340157 ITGAEP38570 1179 aa31.95■■■□□ 2.7
VRK2-201ENST00000340157 UHRF1BP1LA0JNW5 1464 aa31.91■■■□□ 2.7
VRK2-201ENST00000340157 TCOF1Q13428 1488 aaKnown RBP31.91■■■□□ 2.7
VRK2-201ENST00000340157 MIA2Q96PC5 1412 aa31.88■■■□□ 2.69
VRK2-201ENST00000340157 PLEKHD1A6NEE1 506 aa31.86■■■□□ 2.69
VRK2-201ENST00000340157 CCER1Q8TC90 406 aaPredicted RBP31.86■■■□□ 2.69
VRK2-201ENST00000340157 ZCCHC11Q5TAX3 1644 aaKnown RBP31.85■■■□□ 2.69
VRK2-201ENST00000340157 ABCC10Q5T3U5 1492 aa31.82■■■□□ 2.68
VRK2-201ENST00000340157 ITSN2Q9NZM3 1697 aa31.82■■■□□ 2.68
VRK2-201ENST00000340157 KDM5BQ9UGL1 1544 aa31.81■■■□□ 2.68
VRK2-201ENST00000340157 PTPRKQ15262 1439 aa31.81■■■□□ 2.68
VRK2-201ENST00000340157 GPATCH8Q9UKJ3 1502 aaKnown RBP31.8■■■□□ 2.68
VRK2-201ENST00000340157 CDC42BPAQ5VT25 1732 aa31.8■■■□□ 2.68
VRK2-201ENST00000340157 ZEB1P37275 1124 aaPredicted RBP31.76■■■□□ 2.67
VRK2-201ENST00000340157 SETD5Q9C0A6 1442 aa31.7■■■□□ 2.66
VRK2-201ENST00000340157 RAB3GAP2Q9H2M9 1393 aa31.7■■■□□ 2.66
VRK2-201ENST00000340157 ZNF644Q9H582 1327 aaPredicted RBP31.68■■■□□ 2.66
VRK2-201ENST00000340157 CAMSAP2Q08AD1 1489 aa31.66■■■□□ 2.66
VRK2-201ENST00000340157 DNMT1P26358 1616 aaKnown RBP31.65■■■□□ 2.66
VRK2-201ENST00000340157 TTC37Q6PGP7 1564 aa31.65■■■□□ 2.66
VRK2-201ENST00000340157 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.64■■■□□ 2.66
VRK2-201ENST00000340157 CFDP1Q9UEE9 299 aaPredicted RBP31.63■■■□□ 2.65
VRK2-201ENST00000340157 CDC42BPBQ9Y5S2 1711 aa31.62■■■□□ 2.65
VRK2-201ENST00000340157 DHX57Q6P158 1386 aaKnown RBP31.62■■■□□ 2.65
VRK2-201ENST00000340157 PREX2Q70Z35 1606 aa31.62■■■□□ 2.65
VRK2-201ENST00000340157 HFM1A2PYH4 1435 aa31.6■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms