RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 SYNJ2O15056 1496 aa23.16■■□□□ 1.3
CBX3-201ENST00000337620 GRIN2AQ12879 1464 aa23.15■■□□□ 1.3
CBX3-201ENST00000337620 ARHGAP35Q9NRY4 1499 aa23.12■■□□□ 1.29
CBX3-201ENST00000337620 ARAP1Q96P48 1450 aa23.09■■□□□ 1.29
CBX3-201ENST00000337620 VPS8Q8N3P4 1428 aa23.07■■□□□ 1.28
CBX3-201ENST00000337620 P3H3Q8IVL6 736 aa23.06■■□□□ 1.28
CBX3-201ENST00000337620 IQGAP2Q13576 1575 aa23.03■■□□□ 1.28
CBX3-201ENST00000337620 KIAA0586Q9BVV6 1533 aa23.01■■□□□ 1.27
CBX3-201ENST00000337620 PPARGC1BQ86YN6 1023 aaKnown RBP23.01■■□□□ 1.27
CBX3-201ENST00000337620 EFCAB5A4FU69 1503 aa23■■□□□ 1.27
CBX3-201ENST00000337620 CEP170Q5SW79 1584 aa22.99■■□□□ 1.27
CBX3-201ENST00000337620 NUP160Q12769 1436 aa22.97■■□□□ 1.27
CBX3-201ENST00000337620 FHOD3Q2V2M9 1422 aa22.97■■□□□ 1.27
CBX3-201ENST00000337620 CHD1O14646 1710 aa22.95■■□□□ 1.27
CBX3-201ENST00000337620 SAMD9Q5K651 1589 aa22.94■■□□□ 1.26
CBX3-201ENST00000337620 APLP2Q06481 763 aa22.93■■□□□ 1.26
CBX3-201ENST00000337620 UGGT2Q9NYU1 1516 aa22.9■■□□□ 1.26
CBX3-201ENST00000337620 TTBK1Q5TCY1 1321 aaPredicted RBP22.87■■□□□ 1.25
CBX3-201ENST00000337620 JPH4Q96JJ6 628 aa22.86■■□□□ 1.25
CBX3-201ENST00000337620 FMN1Q68DA7 1419 aa22.83■■□□□ 1.25
CBX3-201ENST00000337620 ATP1B4Q9UN42 357 aaPredicted RBP22.83■■□□□ 1.25
CBX3-201ENST00000337620 DISP1Q96F81 1524 aa22.81■■□□□ 1.24
CBX3-201ENST00000337620 TRIM26Q12899 539 aaPredicted RBP22.81■■□□□ 1.24
CBX3-201ENST00000337620 PCGF6Q9BYE7 350 aa22.8■■□□□ 1.24
CBX3-201ENST00000337620 KIAA0556O60303 1618 aa22.79■■□□□ 1.24
CBX3-201ENST00000337620 PCF11O94913 1555 aaKnown RBP22.78■■□□□ 1.24
CBX3-201ENST00000337620 CARMIL2Q6F5E8 1435 aa22.76■■□□□ 1.23
CBX3-201ENST00000337620 CASKIN1Q8WXD9 1431 aa22.76■■□□□ 1.23
CBX3-201ENST00000337620 FYCO1Q9BQS8 1478 aa22.74■■□□□ 1.23
CBX3-201ENST00000337620 KANK4Q5T7N3 995 aaPredicted RBP22.71■■□□□ 1.23
CBX3-201ENST00000337620 PRG4Q92954 1404 aaPredicted RBP22.7■■□□□ 1.22
CBX3-201ENST00000337620 TIAM1Q13009 1591 aa22.67■■□□□ 1.22
CBX3-201ENST00000337620 CLASP1Q7Z460 1538 aa22.66■■□□□ 1.22
CBX3-201ENST00000337620 MAP3K1Q13233 1512 aa22.65■■□□□ 1.22
CBX3-201ENST00000337620 SHROOM2Q13796 1616 aa22.64■■□□□ 1.22
CBX3-201ENST00000337620 OSCARQ8IYS5 282 aa22.62■■□□□ 1.21
CBX3-201ENST00000337620 CFAP43Q8NDM7 1665 aa22.6■■□□□ 1.21
CBX3-201ENST00000337620 HECW1Q76N89 1606 aa22.59■■□□□ 1.21
CBX3-201ENST00000337620 LRRC9Q6ZRR7 1453 aa22.58■■□□□ 1.21
CBX3-201ENST00000337620 LRRIQ1Q96JM4 1722 aa22.57■■□□□ 1.2
CBX3-201ENST00000337620 ARID3CA6NKF2 412 aa22.57■■□□□ 1.2
CBX3-201ENST00000337620 PTPRGP23470 1445 aa22.56■■□□□ 1.2
CBX3-201ENST00000337620 RAPGEF6Q8TEU7 1601 aa22.55■■□□□ 1.2
CBX3-201ENST00000337620 ERCC6L2Q5T890 1561 aa22.55■■□□□ 1.2
CBX3-201ENST00000337620 PLB1Q6P1J6 1458 aa22.55■■□□□ 1.2
CBX3-201ENST00000337620 CCDC18Q5T9S5 1454 aa22.54■■□□□ 1.2
CBX3-201ENST00000337620 EPRSP07814 1512 aaKnown RBP22.53■■□□□ 1.2
CBX3-201ENST00000337620 NUP153P49790 1475 aaKnown RBP22.5■■□□□ 1.19
CBX3-201ENST00000337620 MTUS2Q5JR59 1369 aa22.5■■□□□ 1.19
CBX3-201ENST00000337620 CDK13Q14004 1512 aaKnown RBP22.49■■□□□ 1.19
CBX3-201ENST00000337620 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.49■■□□□ 1.19
CBX3-201ENST00000337620 HNRNPUL2Q1KMD3 747 aaKnown RBP22.49■■□□□ 1.19
CBX3-201ENST00000337620 ABCA8O94911 1581 aa22.46■■□□□ 1.19
CBX3-201ENST00000337620 MAGI3Q5TCQ9 1506 aa22.41■■□□□ 1.18
CBX3-201ENST00000337620 UACAQ9BZF9 1416 aa22.41■■□□□ 1.18
CBX3-201ENST00000337620 EHBP1L1Q8N3D4 1523 aa22.4■■□□□ 1.18
CBX3-201ENST00000337620 CDK11AQ9UQ88 783 aaPredicted RBP22.4■■□□□ 1.18
CBX3-201ENST00000337620 PHLDB1Q86UU1 1377 aa22.38■■□□□ 1.17
CBX3-201ENST00000337620 ATP10BO94823 1461 aa22.35■■□□□ 1.17
CBX3-201ENST00000337620 SUPT6HQ7KZ85 1726 aaKnown RBP22.34■■□□□ 1.17
CBX3-201ENST00000337620 NCOA2Q15596 1464 aa22.34■■□□□ 1.17
CBX3-201ENST00000337620 RRBP1Q9P2E9 1410 aaKnown RBP22.34■■□□□ 1.17
CBX3-201ENST00000337620 CCNB3Q8WWL7 1395 aa22.32■■□□□ 1.16
CBX3-201ENST00000337620 ABCC2Q92887 1545 aa22.31■■□□□ 1.16
CBX3-201ENST00000337620 PLEKHD1A6NEE1 506 aa22.3■■□□□ 1.16
CBX3-201ENST00000337620 TROQ12816 1431 aaPredicted RBP22.27■■□□□ 1.16
CBX3-201ENST00000337620 UHRF1BP1LA0JNW5 1464 aa22.26■■□□□ 1.15
CBX3-201ENST00000337620 ARHGEF11O15085 1522 aa22.25■■□□□ 1.15
CBX3-201ENST00000337620 FAM50AQ14320 339 aaKnown RBP22.25■■□□□ 1.15
CBX3-201ENST00000337620 MYOM3Q5VTT5 1437 aa22.24■■□□□ 1.15
CBX3-201ENST00000337620 FGD6Q6ZV73 1430 aa22.22■■□□□ 1.15
CBX3-201ENST00000337620 ITGAEP38570 1179 aa22.21■■□□□ 1.15
CBX3-201ENST00000337620 ADCY10Q96PN6 1610 aa22.18■■□□□ 1.14
CBX3-201ENST00000337620 KDM5BQ9UGL1 1544 aa22.18■■□□□ 1.14
CBX3-201ENST00000337620 KIF14Q15058 1648 aa22.17■■□□□ 1.14
CBX3-201ENST00000337620 ZCCHC11Q5TAX3 1644 aaKnown RBP22.17■■□□□ 1.14
CBX3-201ENST00000337620 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.13■■□□□ 1.13
CBX3-201ENST00000337620 PTPN23Q9H3S7 1636 aa22.11■■□□□ 1.13
CBX3-201ENST00000337620 MIA2Q96PC5 1412 aa22.11■■□□□ 1.13
CBX3-201ENST00000337620 KCNH8Q96L42 1107 aa22.1■■□□□ 1.13
CBX3-201ENST00000337620 RIMBP3CA6NJZ7 1639 aa22.08■■□□□ 1.13
CBX3-201ENST00000337620 RIMBP3BA6NNM3 1639 aa22.08■■□□□ 1.13
CBX3-201ENST00000337620 RIMBP3Q9UFD9 1639 aa22.08■■□□□ 1.13
CBX3-201ENST00000337620 NPM1P06748 294 aaKnown RBP eCLIP22.08■■□□□ 1.13
CBX3-201ENST00000337620 CYB5RLQ6IPT4 315 aa22.07■■□□□ 1.12
CBX3-201ENST00000337620 CFDP1Q9UEE9 299 aaPredicted RBP22.07■■□□□ 1.12
CBX3-201ENST00000337620 ABCC10Q5T3U5 1492 aa22.07■■□□□ 1.12
CBX3-201ENST00000337620 GPATCH8Q9UKJ3 1502 aaKnown RBP22.07■■□□□ 1.12
CBX3-201ENST00000337620 TCOF1Q13428 1488 aaKnown RBP22.05■■□□□ 1.12
CBX3-201ENST00000337620 ITSN2Q9NZM3 1697 aa22.04■■□□□ 1.12
CBX3-201ENST00000337620 ZNF777Q9ULD5 760 aaPredicted RBP22.03■■□□□ 1.12
CBX3-201ENST00000337620 ZNF644Q9H582 1327 aaPredicted RBP22.03■■□□□ 1.12
CBX3-201ENST00000337620 CDC42BPAQ5VT25 1732 aa22.01■■□□□ 1.11
CBX3-201ENST00000337620 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22■■□□□ 1.112e-7■■□□□ 11.6
CBX3-201ENST00000337620 WDR7Q9Y4E6 1490 aa21.99■■□□□ 1.11
CBX3-201ENST00000337620 ASXL2Q76L83 1435 aa21.98■■□□□ 1.11
CBX3-201ENST00000337620 TTC37Q6PGP7 1564 aa21.98■■□□□ 1.11
CBX3-201ENST00000337620 CCER1Q8TC90 406 aaPredicted RBP21.97■■□□□ 1.11
CBX3-201ENST00000337620 PTPRKQ15262 1439 aa21.97■■□□□ 1.11
CBX3-201ENST00000337620 CAMSAP2Q08AD1 1489 aa21.95■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms